ID:

eca-mir-196a

 Coordinate:

chr11:24681625-24681694 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.6 -36.5
mature

  1. chr6:70856359-70856380 +
  2. eca-mir-196a  chr11:24681667-24681688 -
star

Sense Strand Reads

GACCTGCCCCCAGTGAACCCTTGACCTGGAGCGTGAACTGGAACTGCTGAGTGAGTTAGGTAGTTTCATGTTGTTGGGCCTGGATTTCTGAACACAACGACATTAAACCACCCGACTCACGGCAGTTACTGCTCCTCGCTTAGCTGGAGGAGTTGGGGGGGTGGGGAGTG

***********************************....(((((((((..(((((((.(((.((((.(((((((((.....((....)).....))))))))).)))).))).)))))))))))))).)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................TAGGTAGTTTCATGTTGTTGGA............................................................................................ 22 1 2 1.00 2 2
........................................................TAGGTAGTTTCATGTTGTTGGG............................................................................................ 22 0 2 0.50 1 1
........................................................TAGGTAGTTTCATGTTGTTGG............................................................................................. 21 0 2 0.50 1 1
........................................................TAGGTAGTTTCGTGTTGTTGGGT........................................................................................... 23 2 3 0.33 1 1
........................................................TAGGTAGTTTCCTGTTGTTGGGTAT......................................................................................... 25 3 9 0.11 1 1
........................................................TAGGTAGTTTCGTGTTGTTGGCT........................................................................................... 23 3 13 0.08 1 1

Anti-sense strand reads

CTGGACGGGGGTCACTTGGGAACTGGACCTCGCACTTGACCTTGACGACTCACTCAATCCATCAAAGTACAACAACCCGGACCTAAAGACTTGTGTTGCTGTAATTTGGTGGGCTGAGTGCCGTCAATGACGAGGAGCGAATCGACCTCCTCAACCCCCCCACCCCTCAC

***********************************....(((((((((..(((((((.(((.((((.(((((((((.....((....)).....))))))))).)))).))).)))))))))))))).)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:36 AM