ID:

eca-mir-195

 Coordinate:

chr11:50048869-50048962 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.1 -46.6 -46.5
mature

  1. eca-mir-195  chr11:50048922-50048942 -
  2. chr20:643303-643323 +
star

Sense Strand Reads

CTTGGGAGTAAGTTCTGCCTCCAGAGAGCAAAGTGGAGTCTTTGTTGCCCACACCCAGCTCCCCTGGCTCTAGCAGCACAGAAATATTGGCACTGGGAAGAGAGTCTGCCAATATTGGCTGTGCTGCTCCAGGCAGGGTGGTGAGAGCTGCCAGGAGGGGCTGAGCCCCTGGGGGCTAATGAGAGAGGGAACCG

*******************************************************..(((.(((((.((..((((((((((.((((((((((((........)))..)))))))))..))))))))))..)).))))).)))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................TAGCAGCACAGAAATATTGGC....................................................................................................... 21 0 2 1460.50 2921 2921
......................................................................TAGCAGCACAGAAATATTGGCA...................................................................................................... 22 0 2 995.00 1990 1990
............................................................................................................CCAATATTGGCTGTGCTGCTCC................................................................ 22 0 1 80.00 80 80
......................................................................TAGCAGCACAGAAATATTGGCAA..................................................................................................... 23 1 2 49.50 99 99
............................................................................................................CCAATATTGGCTGTGCTGCTCCA............................................................... 23 0 1 40.00 40 40
............................................................................................................CCAATATTGGCTGTGCTGCTCCT............................................................... 23 1 1 34.00 34 34
......................................................................TAGCAGCACAGAAATATTGG........................................................................................................ 20 0 2 26.50 53 53
............................................................................................................CCAATATTGGCTGTGCTGCTCCAT.............................................................. 24 1 1 23.00 23 23
......................................................................TAGCAGCACAGAAATATTGGCAC..................................................................................................... 23 0 1 21.00 21 21
......................................................................TAGCAGCACAGAAATATTGGCATT.................................................................................................... 24 1 2 17.00 34 34
......................................................................TAGCAGCACAGAAATATTGGA....................................................................................................... 21 1 2 15.00 30 30
............................................................................................................CCAATATTGGCTGTGCTGCTCCATT............................................................. 25 2 1 13.00 13 13
......................................................................TAGCAGCACAGAAATATTGGCACT.................................................................................................... 24 0 1 11.00 11 11
......................................................................TAGCAGCACAGAAATATTGGCT...................................................................................................... 22 1 2 8.50 17 17
......................................................................TAGCAGCACAGAGATATTGGC....................................................................................................... 21 1 2 8.00 16 16
......................................................................TAGCAGCACAGAAATATTGGCACTG................................................................................................... 25 0 1 8.00 8 8
......................................................................TAGCAGCACAGAAATATTGGAA...................................................................................................... 22 1 2 8.00 16 16
......................................................................TAGCAGCACAGAAATATTGAC....................................................................................................... 21 1 2 6.50 13 13
......................................................................TAGCAGCACAGAAATAT........................................................................................................... 17 0 4 6.25 25 25
.....................................................................CTAGCAGCACAGAAATATTGGC....................................................................................................... 22 0 1 6.00 6 6
............................................................................................................CCAATATTGGCTGTGCTGCTC................................................................. 21 0 2 5.50 11 11
......................................................................TAGCAGCACAGAAATATTGGAT...................................................................................................... 22 2 2 5.50 11 11
......................................................................TAGCAGCACAGAAATATTGGCAAT.................................................................................................... 24 1 1 5.00 5 5
......................................................................TAGCAGCACAGAAATATTGACA...................................................................................................... 22 1 2 5.00 10 10
......................................................................TAGCAGCACAGAAATAGTGGC....................................................................................................... 21 1 2 5.00 10 10
......................................................................TAGCAGCACAGAAATATTGGCAG..................................................................................................... 23 1 2 5.00 10 10
......................................................................TAGCAGCACAGAAATATTGGCG...................................................................................................... 22 1 2 4.50 9 9
......................................................................TAGCAGAACAGAAATATTGGC....................................................................................................... 21 1 2 4.00 8 8
......................................................................TAGCAGCACAGAAATATTG......................................................................................................... 19 0 2 4.00 8 8
......................................................................TAGCAGCACAGGAATATTGGCA...................................................................................................... 22 1 2 4.00 8 8
............................................................................................................CCAATATTGGCTGTGCTGCTCT................................................................ 22 1 2 3.50 7 7
......................................................................TAGCAGAACAGAAATATTGGCA...................................................................................................... 22 1 2 3.50 7 7
............................................................................................................CCAATATTGGCTGTGCTGCT.................................................................. 20 0 2 3.00 6 6
......................................................................TAGCAGCACAGGAATATTGGC....................................................................................................... 21 1 2 3.00 6 6
......................................................................TAGCAGCACAGAGATATTGGCA...................................................................................................... 22 1 2 3.00 6 6
......................................................................TAGCAGCACAGAAATATTGGCC...................................................................................................... 22 1 2 2.50 5 5
......................................................................TAGCAGCACAGAAATAGTGGCA...................................................................................................... 22 1 2 2.50 5 5
......................................................................TAGCAGCACAGAAATATTGTCA...................................................................................................... 22 1 2 2.50 5 5
......................................................................TAGCAGCACAGAAATATTGGAAA..................................................................................................... 23 2 2 2.50 5 5
......................................................................TAGCAGCACAGAAATAATGGC....................................................................................................... 21 1 3 2.33 7 7
......................................................................TAGCAGCACAGAAATATTGGCAGT.................................................................................................... 24 1 1 2.00 2 2
............................................................................................................CCAATATTGGCTGTGCTGCTCCG............................................................... 23 1 1 2.00 2 2
......................................................................TAGCAGCACGGAAATATTGGCA...................................................................................................... 22 1 2 2.00 4 4
......................................................................TAGCAGCACAGAAATATTGGCAAG.................................................................................................... 24 2 2 2.00 4 4
......................................................................TGGCAGCACAGAAATATTGGC....................................................................................................... 21 1 2 2.00 4 4
......................................................................TAGCAGCACAGAAATATTGTC....................................................................................................... 21 1 2 2.00 4 4
......................................................................TAGCAGCACAGAAAAATTGGC....................................................................................................... 21 1 2 2.00 4 4
......................................................................TAGCAGCACGGAAATATTGGC....................................................................................................... 21 1 4 1.75 7 7
......................................................................AAGCAGCACAGAAATATTGGC....................................................................................................... 21 1 2 1.50 3 3
......................................................................TAGCAGCACAGAAATGTTGGC....................................................................................................... 21 1 2 1.50 3 3
......................................................................TAGCAGGACAGAAATATTGGCA...................................................................................................... 22 1 2 1.50 3 3
......................................................................TAGCAGCACAGAAATATTGCCA...................................................................................................... 22 1 2 1.50 3 3
......................................................................TAGCAGCACATAAATATTGGCA...................................................................................................... 22 1 2 1.50 3 3
............................................................................................................CCAATATTGGCTGTGCTGCTCCAAT............................................................. 25 2 2 1.50 3 3
......................................................................TAGCAGCATAGAAATATTGGC....................................................................................................... 21 1 2 1.00 2 2
............................................................................................................CCAATATTGGCTGTGCCGCTCC................................................................ 22 1 1 1.00 1 1
............................................................................................................CCAATATTGGCTGTGCTGCTCCATTT............................................................ 26 3 2 1.00 2 2
............................................................................................................CCAATATTGGCTGTGCTGCTCCAA.............................................................. 24 1 2 1.00 2 2
......................................................................TAGCAGCACAGAAATATTGA........................................................................................................ 20 1 3 1.00 3 3
......................................................................TAGCAGCACAGAAAGATTGGC....................................................................................................... 21 1 2 1.00 2 2
.............................................................................................................CAATATTGGCTGTGCTGCTCCAA.............................................................. 23 1 2 1.00 2 2
............................................................................................................CCAATAGTGGCTGTGCTGCTCCA............................................................... 23 1 1 1.00 1 1
............................................................................................................CCAATATTGGCTGTGCTGCGCC................................................................ 22 1 1 1.00 1 1
.....................................................................CTAGCAGCACAGAAATATTGGCA...................................................................................................... 23 0 1 1.00 1 1
......................................................................TAGCAGCACAGAAATATTGGAAG..................................................................................................... 23 2 3 1.00 3 3
.....................................................................CTAGCAGCACACAAATATTGGCA...................................................................................................... 23 1 1 1.00 1 1
............................................................................................................CCAATATTGGCTGTGCTGCTCCAGAAT........................................................... 27 3 1 1.00 1 1
......................................................................TAGCAGCACAGAAATATTGGAAAT.................................................................................................... 24 2 1 1.00 1 1
............................................................................................................CCAATATTGGATGTGCTGCTCCATT............................................................. 25 3 1 1.00 1 1
............................................................................................................CCAATATTGGCTGTGCGGCTCC................................................................ 22 1 1 1.00 1 1
......................................................................TAGCAGCACAGAAATATTGGCATTG................................................................................................... 25 1 1 1.00 1 1
......................................................................TAGCAGCACAGAAAGAGTGGCAC..................................................................................................... 23 2 1 1.00 1 1
............................................................................................................CCAATATTGGCTGTGCTGCTCCAGT............................................................. 25 1 1 1.00 1 1
............................................................................................................CCAATATTGGCTGTGCTGCTCCTT.............................................................. 24 2 1 1.00 1 1
............................................................................................................CCAATATTGGCTGTGCTGCTCCGT.............................................................. 24 2 1 1.00 1 1
......................................................................TAGCAGCACAGAAATATTGTCACTG................................................................................................... 25 1 1 1.00 1 1
......................................................................TAGCAGCACGGAAATATTGACA...................................................................................................... 22 2 2 1.00 2 2
............................................................................................................CCAATAATGGCTGTGCTGCTCC................................................................ 22 1 1 1.00 1 1
......................................................................TAGCAGCACAGACATATTGGC....................................................................................................... 21 1 2 1.00 2 2
......................................................................TAGCAGCACAGAAATAGTGGCACTGGGAA............................................................................................... 29 1 1 1.00 1 1
......................................................................TAGCAGCACAGAGAGATTGGCACTG................................................................................................... 25 2 1 1.00 1 1
......................................................................TAGCAGCACAGAAAAATTGGCA...................................................................................................... 22 1 2 1.00 2 2
............................................................................................................CCAATATTGGCTATGCTGCTCCA............................................................... 23 1 1 1.00 1 1
............................................................................................................CCAATATTGGTTGTGCTGCTCC................................................................ 22 1 1 1.00 1 1
......................................................................TAGCAGCACACAAATATTGGC....................................................................................................... 21 1 2 1.00 2 2
......................................................................TAGCAGCACAGAAATATCGGC....................................................................................................... 21 1 2 1.00 2 2
.....................................................................CTAGCAGCACAGAAATATTAGC....................................................................................................... 22 1 1 1.00 1 1
...................................................................ATCTAGCAGCACAGAAATATTGGC....................................................................................................... 24 1 1 1.00 1 1
......................................................................TAGCAGAACGGAAATATTGGCA...................................................................................................... 22 2 4 0.75 3 3
......................................................................TAGCAGCACAGAAATATTGCC....................................................................................................... 21 1 3 0.67 2 2
......................................................................TAGCAGCACAGGAATATTGGAA...................................................................................................... 22 2 2 0.50 1 1
......................................................................TAGCATCACAGAAATATTGGCA...................................................................................................... 22 1 2 0.50 1 1
............................................................................................................CCAATATTGGCTGTGCTGCTCTAT.............................................................. 24 2 2 0.50 1 1
......................................................................TAGCAGGACAGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGGACCGAAATATTGGC....................................................................................................... 21 2 2 0.50 1 1
......................................................................TAGCAGCACGGAAATATTGCCA...................................................................................................... 22 2 2 0.50 1 1
......................................................................TAGCAGCACAGAAATATTGGCTTT.................................................................................................... 24 2 2 0.50 1 1
......................................................................TAGCAGCGCAGAAATATTGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................CAGCAGCACAGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................GAGCAGCACAGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCCCAGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................CAGCAGCACAGAAATATTGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATAGTGG........................................................................................................ 20 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATACTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATATTGGTAA..................................................................................................... 23 2 2 0.50 1 1
......................................................................TAGCAGCACAGAAACATTGGC....................................................................................................... 21 1 2 0.50 1 1
............................................................................................................CCAATATTGGCTGTGCCGCTCCAAT............................................................. 25 3 2 0.50 1 1
......................................................................TAGCAGCACAGATATATTGGC....................................................................................................... 21 1 2 0.50 1 1
............................................................................................................CCAATATTGGCTGTGCTGCTA................................................................. 21 1 2 0.50 1 1
......................................................................CAGCAGCACAGAAATATTGG........................................................................................................ 20 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATACTGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGTAGCACAGAAATATTGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGCAGCACATAAATATTGGC....................................................................................................... 21 1 4 0.50 2 2
......................................................................TAGCAGCACAGGAATATTGGCG...................................................................................................... 22 2 2 0.50 1 1
......................................................................TAGCAGCACAGAAATATTGGTA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGCAGCACAGCAATATTGGCAA..................................................................................................... 23 2 2 0.50 1 1
......................................................................TAGCAGCACAGAAATATAGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAAGATTGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATATTGGCACA.................................................................................................... 24 1 2 0.50 1 1
......................................................................TAGCAGCACTGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCACAAAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCACGTAAATATTGGCACT.................................................................................................... 24 2 2 0.50 1 1
......................................................................TAGCAGCACGGAAATATTGAC....................................................................................................... 21 2 4 0.50 2 2
......................................................................TAGCAGCACAGAAAGATTGGCC...................................................................................................... 22 2 2 0.50 1 1
......................................................................AAGCAGCACAGAAATATTGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATAATGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATATTGGCCA..................................................................................................... 23 2 2 0.50 1 1
......................................................................TAGCAGCAGAGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCGCAGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATTTTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCACCGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCACAGAAATATTGGT....................................................................................................... 21 1 2 0.50 1 1
......................................................................TAGCAGCACCGAAATATTGGCA...................................................................................................... 22 1 2 0.50 1 1
......................................................................TAGCCGCACAGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
.......................................................................AGCAGCACAGAAATATTGGCA...................................................................................................... 21 0 2 0.50 1 1
......................................................................TAGCGGCACAGAAATATTGGC....................................................................................................... 21 1 2 0.50 1 1
........................................................................GCAGCACAGAAATATTGGC....................................................................................................... 19 0 2 0.50 1 1
......................................................................TAGCAGAACGGAAATATTGGC....................................................................................................... 21 2 7 0.43 3 3
......................................................................TAGCAGCACAGAAAGAGTGGC....................................................................................................... 21 2 8 0.38 3 3
......................................................................GAGCAGCACAGAAATATTGACA...................................................................................................... 22 2 3 0.33 1 1
......................................................................TAGCAGCACAGGAATATTGGCC...................................................................................................... 22 2 3 0.33 1 1
............................................................................................................CCAATATTGGCTGTACTGCTCT................................................................ 22 2 3 0.33 1 1
......................................................................TAGCAGCACAGAAATATTGGCTG..................................................................................................... 23 2 3 0.33 1 1
......................................................................TAGCAGCACAGAAATATTGC........................................................................................................ 20 1 3 0.33 1 1
......................................................................TAGCAGCACCGAAATATTGTC....................................................................................................... 21 2 3 0.33 1 1
......................................................................TAGCAGCACAGAAAGACTGGC....................................................................................................... 21 2 3 0.33 1 1
......................................................................TAGCAGCACAGAAATATTGGCGA..................................................................................................... 23 2 3 0.33 1 1
...........................................................................GCACAGAAATATTGGC....................................................................................................... 16 0 3 0.33 1 1
......................................................................TAGCAGCACAGAAATAATGGCC...................................................................................................... 22 2 3 0.33 1 1
......................................................................TAGCAGCACGGAAATATTGGCAA..................................................................................................... 23 2 3 0.33 1 1
......................................................................TAGCAGGACAGAAATATTGAC....................................................................................................... 21 2 7 0.29 2 2
......................................................................TAGCAGGACAGAAATATTGACA...................................................................................................... 22 2 4 0.25 1 1
......................................................................TAGCAGCACATAAATATTGACA...................................................................................................... 22 2 4 0.25 1 1
.........................................................................TAGCACAGAAATATTGGCA...................................................................................................... 19 1 4 0.25 1 1
......................................................................TAGCAGCACAGAAAGAGTGGCA...................................................................................................... 22 2 4 0.25 1 1
......................................................................TAGCAGGACGGAAATATTGCCA...................................................................................................... 22 3 4 0.25 1 1
......................................................................TAGCAGGACAGAAATATTGCC....................................................................................................... 21 2 4 0.25 1 1
............................................................................................................CCAATAGTGACTGTGCTGCTCCT............................................................... 23 3 4 0.25 1 1
......................................................................TAGCAGCACGTAAATAGTGGCAC..................................................................................................... 23 3 4 0.25 1 1
............................................................................................................CCAATATTGGCTATGCTGCTCT................................................................ 22 2 4 0.25 1 1
......................................................................TAGCAGGACGGAAATATTGGCAA..................................................................................................... 23 3 9 0.22 2 2
......................................................................TAGCAGGACGGAAATATTGGC....................................................................................................... 21 2 5 0.20 1 1
......................................................................TAGCAGCATAGAGATATTGGC....................................................................................................... 21 2 5 0.20 1 1
......................................................................AAGCAGCACAGGAATATTGGC....................................................................................................... 21 2 5 0.20 1 1
......................................................................TAGCAGCACAGAAATATTT......................................................................................................... 19 1 6 0.17 1 1
......................................................................TAGCAGGACCGAAATATTGACA...................................................................................................... 22 3 7 0.14 1 1
......................................................................TAGCAGAACAGAAATATTG......................................................................................................... 19 1 8 0.13 1 1
......................................................................TAGCAGTACATAAATATTGGC....................................................................................................... 21 2 8 0.13 1 1
......................................................................TAGCAGCACATAAATATTGAC....................................................................................................... 21 2 8 0.13 1 1
......................................................................TAGCAGGACGGAAATATTGACA...................................................................................................... 22 3 9 0.11 1 1
......................................................................TAGCAGCACAGAAACAGTGGC....................................................................................................... 21 2 9 0.11 1 1
......................................................................TAGCAGCACATAAATATTGCC....................................................................................................... 21 2 9 0.11 1 1
......................................................................TAGCAGAACAGAAATATTGAC....................................................................................................... 21 2 9 0.11 1 1
............................................................................................CTGGGAAGAGAGTCTG...................................................................................... 16 0 12 0.08 1 1
......................................................................TAGCAGCACATAAATATTGC........................................................................................................ 20 2 17 0.06 1 1

Anti-sense strand reads

GAACCCTCATTCAAGACGGAGGTCTCTCGTTTCACCTCAGAAACAACGGGTGTGGGTCGAGGGGACCGAGATCGTCGTGTCTTTATAACCGTGACCCTTCTCTCAGACGGTTATAACCGACACGACGAGGTCCGTCCCACCACTCTCGACGGTCCTCCCCGACTCGGGGACCCCCGATTACTCTCTCCCTTGGC

*************************************************..(((.(((((.((..((((((((((.((((((((((((........)))..)))))))))..))))))))))..)).))))).)))...******************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:37 AM