ID:

eca-mir-193b

 Coordinate:

chr13:30687480-30687548 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.4 -36.8

Sense Strand Reads

TCGAAAGGGTGGACCCGGAATGGGAAAGGAGGTTTTCGAGTCTGTGGTCCCAGAATCGGGGTTTTGAGGGCGAGATGAGTTTATGTTTTATCCAACTGGCCCACAAAGTCCCGCTTTTGGGGTCATTCCAAACAGCGAGGGATTCAGGCCCCAGCAGTCCCTGGAGAGT

*****************************************..((((((((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).))))))))))))....*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................AACTGGCCCACAAAGTCCCGCT...................................................... 22 0 1 97.00 97 97
.............................................................................................AACTGGCCCACAAAGTCCCGCTT..................................................... 23 0 1 62.00 62 62
.............................................................................................AACTGGCCCACAAAGTCCCGCTTT.................................................... 24 0 1 40.00 40 40
..............................................................................................ACTGGCCCACAAAGTCCCGCTTT.................................................... 23 0 1 7.00 7 7
.............................................................................................AACTGGCCCACAAAGTCCCGCTTTT................................................... 25 0 1 6.00 6 6
.............................................................................................CACTGGCCCACAAAGTCCCGCT...................................................... 22 1 1 6.00 6 6
.............................................................................................AACTGGCCCACAAAGTCCCGCTAA.................................................... 24 2 1 5.00 5 5
.............................................................................................AACTGGCCCACAAAGTCCCGCCT..................................................... 23 1 1 5.00 5 5
.............................................................................................AACTGGCCCACAAAGTCCCGC....................................................... 21 0 1 4.00 4 4
.............................................................................................AACTGGCCCACAAAGTCCCGCTA..................................................... 23 1 1 4.00 4 4
.............................................................................................AACTGGCCCACAAAGTCCCGCTTTTT.................................................. 26 1 1 3.00 3 3
.............................................................................................AACTGGCCCACAAAGTCCCGCTG..................................................... 23 1 1 3.00 3 3
.............................................................................................AACTGGCCCACAAAGTCCCGCC...................................................... 22 1 1 3.00 3 3
.............................................................................................CACTGGCCCACAAAGTCCCGCTT..................................................... 23 1 1 3.00 3 3
.............................................................................................AACTGGCCCACAAAGTCCCGCTTAA................................................... 25 2 1 3.00 3 3
.............................................................................................CACTGGCCCACAAAGTCCCGCTTT.................................................... 24 1 1 3.00 3 3
..............................................................................................ACTGGCCCACAAAGTCCCGCTT..................................................... 22 0 1 3.00 3 3
.............................................................................................AACTGGCCCACAAAGTCCCGCAATA................................................... 25 3 1 2.00 2 2
.............................................................................................AACTGGCCCACAAAGTCCCGCTTAAA.................................................. 26 3 1 2.00 2 2
.............................................................................................AACTGGCCCACAAAGTCCCGCAA..................................................... 23 2 1 2.00 2 2
..............................................................................................CCTGGCCCACAAAGTCCCGCT...................................................... 21 1 1 2.00 2 2
.............................................................................................AACTGGCCCACAAAGTCCCGCTGT.................................................... 24 1 1 2.00 2 2
.............................................................................................AACTGGCCCACAAAGTCCCGCTAAA................................................... 25 3 1 2.00 2 2
........................................................CGGGGTTTTGAGGGCGAGA.............................................................................................. 19 0 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGCCCT.................................................... 24 2 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCTCTT..................................................... 23 1 1 1.00 1 1
.............................................................................................AACTGGCCCACGAAGTCCCGCT...................................................... 22 1 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGCTATT................................................... 24 1 1 1.00 1 1
.............................................................................................CACTGGCCCACGAAGTCCCGCTTTT................................................... 25 2 1 1.00 1 1
..............................................................................................CCTGGCCCACAAAGTCCCGCTTT.................................................... 23 1 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGCTTAA................................................... 24 2 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCACTTTT................................................... 25 1 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGCTAAA................................................... 24 3 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGCTAT.................................................... 24 1 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGCTAGA................................................... 25 3 1 1.00 1 1
.............................................................................................AACTGGCCCACAAACTACCGCT...................................................... 22 2 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGATT..................................................... 23 1 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGCTTA.................................................... 24 1 1 1.00 1 1
.............................................................................................CACTGGCCCACAAAGTCCCGCTTTT................................................... 25 1 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGC....................................................... 20 0 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGCTTAAA.................................................. 25 3 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGCTTTA................................................... 25 1 1 1.00 1 1
.............................................................................................AACTGGCCTACAAAGTCCCGCTT..................................................... 23 1 1 1.00 1 1
.............................................................................................AACTGGCCCACGAAGTCCCGC....................................................... 21 1 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGCTAA.................................................... 23 2 1 1.00 1 1
........................................................CGGGGTTTTGAGGGCGAGATGAT.......................................................................................... 23 1 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTACCGCT...................................................... 22 1 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGCTATAA.................................................. 26 3 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGCTA..................................................... 22 1 1 1.00 1 1
.............................................................................................AACTGGACCACAAAGTCCCGCT...................................................... 22 1 1 1.00 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGA....................................................... 21 1 1 1.00 1 1
.............................................................................................AACTGGCCCATAAAGTCCCGCTTTAA.................................................. 26 3 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGCTAATA.................................................. 25 3 1 1.00 1 1
..............................................................................................ACTGGCCCACAAAGTCCCGCTTTAT.................................................. 25 2 1 1.00 1 1
........................................................CGGGGTTTTGAGGGCGAGATG............................................................................................ 21 0 1 1.00 1 1
.......................................................TCGGGGGTTTGAGGGCGAGAT............................................................................................. 21 1 1 1.00 1 1
.............................................................................................AACTGGACCACAAAGTCCCACT...................................................... 22 2 2 0.50 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGCCCAT................................................... 25 3 2 0.50 1 1
.............................................................................................CACTGGCCCACAAAGTCCCGCAA..................................................... 23 3 4 0.50 2 2
.............................................................................................AACTGGCCCACAAAGTCCCT........................................................ 20 1 2 0.50 1 1
.............................................................................................AACTGGCCCACAAAGTCCCGAAA..................................................... 23 3 4 0.25 1 1

Anti-sense strand reads

AGCTTTCCCACCTGGGCCTTACCCTTTCCTCCAAAAGCTCAGACACCAGGGTCTTAGCCCCAAAACTCCCGCTCTACTCAAATACAAAATAGGTTGACCGGGTGTTTCAGGGCGAAAACCCCAGTAAGGTTTGTCGCTCCCTAAGTCCGGGGTCGTCAGGGACCTCTCA

***************************************..((((((((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).))))))))))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................CCGCTCTACTCAAATACAAAATAGGTT.......................................................................... 27 0 1 1.00 1 1

Generated: 09/01/2015 at 11:39 AM