ID:

eca-mir-193a

 Coordinate:

chr11:40807843-40807923 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CCGCGGAAGCCCGTCGGGGGCGCGCCCGCACCCCAAACTCCGAGACGCGCGGGAGCTGAGGGCTGGGTCTTTGCGGGCGAGATGAGGGTGTCAGTTCAACTGGCCTACAAAGTCCCAGTCTTCGGCCCCCGGGACCGGCGGCTCCTCTGCGCTCCTCGGGCCGGGCCGACTTCCTCCCGGG

************************************************.((((.(((((((((((((.(((((.((((.((.((((........)))).)).)))).))))).))))))))))))).))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................................AACTGGCCTACAAAGTCCCAGT.............................................................. 22 0 1 12.00 12 12
...............................................................TGGGTCTTTGCGGGCGAGATGA................................................................................................ 22 0 1 11.00 11 11
...............................................................TGGGTCTTTGCGGGCGAGATG................................................................................................. 21 0 1 5.00 5 5
.................................................................................................CACTGGCCTACAAAGTCCCAGT.............................................................. 22 1 1 3.00 3 3
.................................................................................................AACTGGCCTACAAAGTCCCT................................................................ 20 1 1 2.00 2 2
...............................................................TGGGTCTTTGCGGGCGAGATGAA............................................................................................... 23 1 1 2.00 2 2
.................................................................................................AACTGGCCTACAAAGTCCCAGTA............................................................. 23 1 1 2.00 2 2
.................................................................................................AACTGGCCTACAAAGTCCCAT............................................................... 21 1 1 2.00 2 2
...............................................................TGGGTCTTTGCGGGCGAGA................................................................................................... 19 0 1 2.00 2 2
...............................................................TGGGTCTTTGCGGGCGAGATGAGT.............................................................................................. 24 1 1 1.00 1 1
.................................................................................................AACTGGCCTACAAAGTACCAGT.............................................................. 22 1 1 1.00 1 1
...............................................................TGGGTCTTTGCGGGCGAGAT.................................................................................................. 20 0 1 1.00 1 1
...............................................................TGGGTCTTTGCGGGCGAGATT................................................................................................. 21 1 1 1.00 1 1
.................................................................................................AACTGGCCTACGAAGTCCCAGT.............................................................. 22 1 1 1.00 1 1
.................................................................................................AACTGGCCTACAAAGTCCCAG............................................................... 21 0 1 1.00 1 1
.................................................................................................AACTGGCCTACAAAGTCCCA................................................................ 20 0 1 1.00 1 1
.................................................................................................AACTGGCCTACAAAGTCCCATT.............................................................. 22 1 1 1.00 1 1

Anti-sense strand reads

GGCGCCTTCGGGCAGCCCCCGCGCGGGCGTGGGGTTTGAGGCTCTGCGCGCCCTCGACTCCCGACCCAGAAACGCCCGCTCTACTCCCACAGTCAAGTTGACCGGATGTTTCAGGGTCAGAAGCCGGGGGCCCTGGCCGCCGAGGAGACGCGAGGAGCCCGGCCCGGCTGAAGGAGGGCCC

***********************************************.((((.(((((((((((((.(((((.((((.((.((((........)))).)).)))).))))).))))))))))))).))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:35 AM