ID:

eca-mir-190b

 Coordinate:

chr5:43502619-43502698 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.5 -42.7 -42.7

Sense Strand Reads

CCTTTCTTTGTAGTGTGGGGAAGGCAGATGACCACCAAAGCTCTCCTGCCTGCTTCTGTGTGATATGTTTGATATTGGGTTGTTTAATTAGAAACCAACTAAATGTCAAACATATTCTTACAGCAGTGGGCGCTTTGGCATCACACTCTTTTCTACCTCAACCTCCAGGGCTCTGGGGCT

***********************************((((((......(((((((.(((((.(((((((((((((((.((((((((......))).))))).)))))))))))))))..))))).)))))))))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................TGATATGTTTGATATTGGGTTG.................................................................................................. 22 0 1 40.00 40 40
............................................................TGATATGTTTGATATTGGGTTGT................................................................................................. 23 0 1 27.00 27 27
............................................................TGATATGTTTGATATTGGGTTGA................................................................................................. 23 1 1 12.00 12 12
............................................................TGATATGTTTGATATTGGGTTT.................................................................................................. 22 1 1 2.00 2 2
............................................................TGATATGTTTGATATTGGG..................................................................................................... 19 0 1 1.00 1 1
............................................................TGATATGTTTGATATTGGGTT................................................................................................... 21 0 1 1.00 1 1
............................................................TGATATGTTTGATATTGGGTTGTT................................................................................................ 24 0 1 1.00 1 1
............................................................TGATATGTTTGATATTGGGATG.................................................................................................. 22 1 1 1.00 1 1
............................................................TGATATGTTTGACATTGGGTTG.................................................................................................. 22 1 1 1.00 1 1
............................................................TGATATGTTTGATATTGGGTTGTA................................................................................................ 24 1 1 1.00 1 1
............................................................TGATATGTTTGATATTGGGCTGA................................................................................................. 23 2 1 1.00 1 1
.........................................TCTCCTGCCTGCTTCTGTG........................................................................................................................ 19 0 1 1.00 1 1
............................................................TGATATGTTTGATATTGGGTTA.................................................................................................. 22 1 1 1.00 1 1
............................................................TGATATGTTTGATATTGGGT.................................................................................................... 20 0 1 1.00 1 1
............................................................TGATATGTTTGATATTGGGTTTTA................................................................................................ 24 2 2 0.50 1 1
............................................................TGATATCTTGGATATTGGGTTG.................................................................................................. 22 2 2 0.50 1 1
............................................................TGATATGTTTGATAT......................................................................................................... 15 0 20 0.10 2 2

Anti-sense strand reads

GGAAAGAAACATCACACCCCTTCCGTCTACTGGTGGTTTCGAGAGGACGGACGAAGACACACTATACAAACTATAACCCAACAAATTAATCTTTGGTTGATTTACAGTTTGTATAAGAATGTCGTCACCCGCGAAACCGTAGTGTGAGAAAAGATGGAGTTGGAGGTCCCGAGACCCCGA

***********************************((((((......(((((((.(((((.(((((((((((((((.((((((((......))).))))).)))))))))))))))..))))).)))))))))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:03 PM