ID:

eca-mir-190a

 Coordinate:

chr1:129246375-129246441 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.6 -30.3 -30.3

Sense Strand Reads

TGTGCCTGTTCTCGAGCTCAGTCAGACCTGGATGCCTTTTCTGCAGGCCTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAACATATTCCTACAGTGTCTTGCCCTGTCTCCGGGGGTTCCTAATGTAGTTTATAAGGTGACAGG

***********************************.......(((((...(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..)))))...))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................TGATATGTTTGATATATTAGGTTG........................................................................................ 24 0 1 23.00 23 23
.......................................................TGATATGTTTGATATATTAGGTT......................................................................................... 23 0 1 22.00 22 22
.......................................................TGATATGTTTGATATATTAGGT.......................................................................................... 22 0 1 19.00 19 19
.......................................................TGATATGTTTGATATATTAGGTTGT....................................................................................... 25 0 1 5.00 5 5
.......................................................TGATATGTTTGATATATTAGGTA......................................................................................... 23 1 1 3.00 3 3
.......................................................TGATATGTTTGATATATTAGG........................................................................................... 21 0 1 3.00 3 3
.......................................................TGATATGTTTGATATATTAGGTTT........................................................................................ 24 1 1 2.00 2 2
.......................................................TGATATGTTTGCTATATTAGGT.......................................................................................... 22 1 1 1.00 1 1
.......................................................TGATATGTTTGATATATTAGGTTGTAT..................................................................................... 27 2 1 1.00 1 1
.......................................................TGATATGTTTGATATATTAGGTTGA....................................................................................... 25 1 1 1.00 1 1
.......................................................TGATATGTTTGATATATTAGGTAT........................................................................................ 24 2 1 1.00 1 1
.......................................................TGATATGTTTGATATATTAG............................................................................................ 20 0 1 1.00 1 1
.......................................................TGATATGTTTGATATATTAGGGTG........................................................................................ 24 1 1 1.00 1 1
.......................................................TGATATGTTTGATATATTAGGATGT....................................................................................... 25 1 1 1.00 1 1
.......................................................TGATATGTTTGAGATATTAGGTTGT....................................................................................... 25 1 1 1.00 1 1
.......................................................TGATATGTTTGATATATTATGT.......................................................................................... 22 1 1 1.00 1 1
....................................TTTTCTGCAGGCCTCTGTG................................................................................................................ 19 0 1 1.00 1 1
.......................................................TGATATGTTTGATATATTAGGA.......................................................................................... 22 1 2 0.50 1 1
.......................................................TGATATGTTTGATAGATTAGGTA......................................................................................... 23 2 2 0.50 1 1
.......................................................TGATATGTTTGATATATTAGGAT......................................................................................... 23 1 2 0.50 1 1
.......................................................TGATATGTTAGATATATTACGTT......................................................................................... 23 2 3 0.33 1 1
.......................................................TGATATGTTTGATATA................................................................................................ 16 0 10 0.10 1 1

Anti-sense strand reads

ACACGGACAAGAGCTCGAGTCAGTCTGGACCTACGGAAAAGACGTCCGGAGACACACTATACAAACTATATAATCCAACAATAAATTAGGTTGATATATAGTTTGTATAAGGATGTCACAGAACGGGACAGAGGCCCCCAAGGATTACATCAAATATTCCACTGTCC

***********************************.......(((((...(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..)))))...))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:32 AM