ID:

eca-mir-1892

 Coordinate:

chr1:171287043-171287122 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CATTTGTTGGGCTTTACTGTTCTTGCTATTGAATGGCATATACATCTGCCTGGATATATTTCTACTCTTGATTAAAGTTTTGTAAGAAACAATACAGGATTTGGGGTGGGGGATGGGGAGGGAGGATATTTTACTGAGAACTATTTACAAAAGACTTATCTGTAAGTTTGAACTCAGGAG

***********************************.........(((.(((...(((.((((((((((......((((((((((........)))))))))))))))))))))))...))).)))....................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................TGCCTGGATATATTTCTACTCTTGATT........................................................................................................... 27 0 1 2.00 2 2
...................................................................................................................................TACTGAGAACTATTTACAAAAGACT........................ 25 0 1 2.00 2 2
..............................................................................................................................TATTTTACTGAGAACTATTTACAAAAG........................... 27 0 1 2.00 2 2
.................................................CTGGATATATTTCTACTCTTGATTAAAGTTTTGTAAGA............................................................................................. 38 0 1 1.00 1 1
..............................................................................................................................TATTTTACTGAGAACTATTTACAAAAGACT........................ 30 0 1 1.00 1 1
...................................................................................................................................TACTGAGAACTATTTACAAAAGACTTATC.................... 29 0 1 1.00 1 1
...........................CTTGAATGGCATATACATCTGCCTGGATA............................................................................................................................ 29 1 1 1.00 1 1
................................................................................................................................TTTTACTGAGAACTATTTACAAAAGACT........................ 28 0 1 1.00 1 1

Anti-sense strand reads

GTAAACAACCCGAAATGACAAGAACGATAACTTACCGTATATGTAGACGGACCTATATAAAGATGAGAACTAATTTCAAAACATTCTTTGTTATGTCCTAAACCCCACCCCCTACCCCTCCCTCCTATAAAATGACTCTTGATAAATGTTTTCTGAATAGACATTCAAACTTGAGTCCTC

***********************************.........(((.(((...(((.((((((((((......((((((((((........)))))))))))))))))))))))...))).)))....................*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:32 AM