ID:

eca-mir-1839

 Coordinate:

chr1:91911484-91911543 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.5 -23.5 -23.5

Sense Strand Reads

AATAGAGTCCTTGAAGTCAAGCTGACTCTGCTTTTAGCCTCCTAAATGAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCAATGGTACGCTTTCCATTGTCTTCCCATAGAAAATAGGAATAGTAAAT

***********************************(((..((....((....(((((((((...((((((((...............))))))))..)))))))))..)).....))...)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................AAGGTAGATAGAACAGGTCTTGT....................................................................................... 23 0 1 422.00 422 422
...................................................AGGTAGATAGAACAGGTCTTGT....................................................................................... 22 0 1 136.00 136 136
..................................................AAGGTAGATAGAACAGGTCTTG........................................................................................ 22 0 1 116.00 116 116
...................................................AGGTAGATAGAACAGGTCTTGTT...................................................................................... 23 0 1 67.00 67 67
..................................................AAGGTAGATAGAACAGGTCTTGA....................................................................................... 23 1 1 43.00 43 43
..................................................AAGGTAGATAGAACAGGTCTTGTT...................................................................................... 24 0 1 28.00 28 28
..................................................AAGGTAGATAGAACAGGTCT.......................................................................................... 20 0 1 23.00 23 23
..................................................CAGGTAGATAGAACAGGTCTTGT....................................................................................... 23 1 1 23.00 23 23
...................................................AGGTAGATAGAACAGGTCTTG........................................................................................ 21 0 1 16.00 16 16
..................................................AAGGTAGATAGAACAGGTCTT......................................................................................... 21 0 1 14.00 14 14
.........................................................................................AGACCTACTTATCTACCAACA.................................................. 21 0 1 13.00 13 13
..................................................AAGGTAGATAGAACAGGTCTTT........................................................................................ 22 1 1 9.00 9 9
...................................................AGGTAGATAGAACAGGTCTTGA....................................................................................... 22 1 1 8.00 8 8
...................................................AGGTAGATAGAACAGGTCTTGTTT..................................................................................... 24 0 1 8.00 8 8
.........................................................................................AGACCTACTTATCTACCAACAGC................................................ 23 0 1 8.00 8 8
.........................................................................................AGACCTACTTATCTACCAACAG................................................. 22 0 1 6.00 6 6
...................................................CGGTAGATAGAACAGGTCTTGT....................................................................................... 22 1 1 5.00 5 5
...................................................CGGTAGATAGAACAGGTCTTGTT...................................................................................... 23 1 1 4.00 4 4
...................................................AGGTAGATAGAACAGGTCTTGTTA..................................................................................... 24 1 1 4.00 4 4
..................................................AAGGTAGATAGAACAGGTCTTGAT...................................................................................... 24 1 1 3.00 3 3
..................................................AAGGTAGATAGAACAGGTCGTGT....................................................................................... 23 1 1 3.00 3 3
..................................................CAGGTAGATAGAACAGGTCTTG........................................................................................ 22 1 1 3.00 3 3
..................................................CAGGTAGATAGAACAGGTCTTGA....................................................................................... 23 2 1 3.00 3 3
..................................................AAGGTAGATAGAACGGGTCTTGT....................................................................................... 23 1 1 3.00 3 3
...................................................AGGTAGATAGAACAGGTCTT......................................................................................... 20 0 1 3.00 3 3
...................................................AGGTAGATAGAACAGGTCTTGAA...................................................................................... 23 2 1 2.00 2 2
..................................................AAGGTAGATAAAACAGGTCTTGT....................................................................................... 23 1 1 2.00 2 2
..................................................AAGGTAGATAGAACAGGTCTTGAA...................................................................................... 24 2 1 2.00 2 2
..................................................AAGGTAGATAGGACAGGTCTTTT....................................................................................... 23 2 1 2.00 2 2
..................................................AAGGTAGATAGAACAGGTC........................................................................................... 19 0 1 2.00 2 2
..................................................AAGGTAGATAGAACAGGTCATG........................................................................................ 22 1 1 2.00 2 2
..................................................AAGGTAGATAGAACAGGTCTTAT....................................................................................... 23 1 1 2.00 2 2
.........................................................................................AGACCTACTTATCTACCAACAGTT............................................... 24 2 1 2.00 2 2
...................................................AGGTAGATAGAACAGGTCTAGTT...................................................................................... 23 1 1 2.00 2 2
.................................................AAAGGTAGATAGAACAGGTCTTG........................................................................................ 23 0 1 2.00 2 2
..................................................AAGGTAGATAGAACAGGTCTTA........................................................................................ 22 1 1 2.00 2 2
..................................................AAGGTAGATAGAACAGATCTTGT....................................................................................... 23 1 1 2.00 2 2
...................................................AGGTAGATAGAACAGGTCTTGTA...................................................................................... 23 1 1 2.00 2 2
...................................................AGGTAGATAGAACAGGTCT.......................................................................................... 19 0 1 2.00 2 2
..................................................AAGGTAGATAGAACAGGTCTTGTTT..................................................................................... 25 0 1 2.00 2 2
..................................................AAGGTAGATAGAACAGGTCTTTT....................................................................................... 23 1 1 2.00 2 2
..................................................AAGGTAGATAGAACAGGTCTTGTTTT.................................................................................... 26 1 1 2.00 2 2
..................................................AAGGTAGATAGAACAAGTCTTGT....................................................................................... 23 1 1 2.00 2 2
...................................................AGGTAGATAGAACAGGTCTCGT....................................................................................... 22 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTGAAG..................................................................................... 25 3 1 1.00 1 1
.........................................................................................CGACCTACTTATCTACCAACAG................................................. 22 1 1 1.00 1 1
.................................................AAAGGTAGAGAGAACAGGTGTTGT....................................................................................... 24 2 1 1.00 1 1
..................................................AAGGTAAATAGAACAGGTCTTGT....................................................................................... 23 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCCTG........................................................................................ 22 1 1 1.00 1 1
..................................................AAGGTGGATAGAACAGGTCTTGT....................................................................................... 23 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTGAGT..................................................................................... 25 2 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTGGTT...................................................................................... 23 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGATCTTCT....................................................................................... 23 2 1 1.00 1 1
...................................................AGGTAGATACAACAGGTCTTGTT...................................................................................... 23 1 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTTGTAT..................................................................................... 24 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTCT....................................................................................... 23 1 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTTT........................................................................................ 21 1 1 1.00 1 1
..................................................AAGGTAGATATAACAGGTCTTG........................................................................................ 22 1 1 1.00 1 1
..................................................AAGGTAGATCGAACAGGTCGTGT....................................................................................... 23 2 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTTTTGT....................................................................................... 22 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTATT....................................................................................... 23 2 1 1.00 1 1
..................................................AAGGTAGATGGAACAGGTCTTGT....................................................................................... 23 1 1 1.00 1 1
...................................................AGGTAGATAGAACAGGGCTTGTTT..................................................................................... 24 1 1 1.00 1 1
...................................................AGGTAGATAGAAGAGGTCTTGTT...................................................................................... 23 1 1 1.00 1 1
.........................................................................................AGACCTACTTATCTACCAACT.................................................. 21 1 1 1.00 1 1
................................................AAAAGGTAGATAGAACAGGTCT.......................................................................................... 22 0 1 1.00 1 1
.........................................................................................AGACCTACTTATCTACCAACAGCA............................................... 24 0 1 1.00 1 1
..................................................AAGGTAGATAGGACAGGTCTTGTT...................................................................................... 24 1 1 1.00 1 1
..................................................AAGGTAGATCGAACAGGTCATGT....................................................................................... 23 2 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTAGT....................................................................................... 22 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCGTGA....................................................................................... 23 2 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTGTTA..................................................................................... 25 1 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTGGTTT..................................................................................... 24 1 1 1.00 1 1
.................................................AAAGGTAGATAGAACAGGTCT.......................................................................................... 21 0 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTGTTTGC................................................................................... 27 0 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTTGTTTGCT.................................................................................. 27 1 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTTGC....................................................................................... 22 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCATGG....................................................................................... 23 2 1 1.00 1 1
..................................................AAGGTAGATATAACAGGTCTTGT....................................................................................... 23 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTGTTAT.................................................................................... 26 2 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTGTA...................................................................................... 24 1 1 1.00 1 1
.................................................AAAGGTAGATAGAACAGGTCTT......................................................................................... 22 0 1 1.00 1 1
..................................................AAGGTAGATAGAGCAGGTCTTGT....................................................................................... 23 1 1 1.00 1 1
..................................................CAGGTAGATAGAACAGGTCTTGG....................................................................................... 23 2 1 1.00 1 1
................................................AAAAGGTAGATAGAACAGGTCTTGT....................................................................................... 25 0 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTTGAG...................................................................................... 23 2 1 1.00 1 1
..................................................AAGGTAGATAGAACGGGTCTTG........................................................................................ 22 1 1 1.00 1 1
..................................................CAGGTAGATAGAACAGGTCTT......................................................................................... 21 1 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTC........................................................................................... 18 0 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTTAT...................................................................................... 24 2 1 1.00 1 1
.........................................................................................AGACCTACTTATCTACTAACAG................................................. 22 1 1 1.00 1 1
.................................................CAAGGTAGATAGAACAGGTCTTGT....................................................................................... 24 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTGTTTGCAAAT............................................................................... 31 1 1 1.00 1 1
..................................................AAGGTAGATAGAGCAGGTCTTGA....................................................................................... 23 2 1 1.00 1 1
...................................................AGGTAGATAGAACAGGGCTTGT....................................................................................... 22 1 1 1.00 1 1
...................................................AGGTAGCTAGAACAGGTCTGGTT...................................................................................... 23 2 1 1.00 1 1
..................................................CAGGTAGATAGAACAGGTCTTGTA...................................................................................... 24 2 1 1.00 1 1
..................................................AAGGAAGATAGAACAGGTCTTGT....................................................................................... 23 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCGTGTT...................................................................................... 24 1 1 1.00 1 1
..................................................CAGGTAGATAGAGCAGGTCTTGT....................................................................................... 23 2 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCTTGG....................................................................................... 23 1 1 1.00 1 1
..................................................AAGGTAGATAGAACAGGTCGTGTATT.................................................................................... 26 3 1 1.00 1 1
..................................................CAGGTAGATAGAACAGGTCTTGTT...................................................................................... 24 1 1 1.00 1 1
......................................................................................TCAAGACCTACTTATCTACCAAT................................................... 23 1 1 1.00 1 1
.........................................................................................AGACCTACTTATCTACCAACAGCT............................................... 24 1 1 1.00 1 1
...................................................CGGTAGATAGAACAGGTCTTGTAT..................................................................................... 24 2 1 1.00 1 1
...................................................AGGTAGATAAAACAGGTCTGGTT...................................................................................... 23 2 1 1.00 1 1
..................................................CAGGTAGATAGAACAGGTCT.......................................................................................... 20 1 1 1.00 1 1
.........................................................................................AGACCTACTTATCTGCCAACAGC................................................ 23 1 1 1.00 1 1
.........................................................................................CGACCTACTTATCTACCAACAGCT............................................... 24 2 1 1.00 1 1
..................................................AAGGTAGATGGAACAGGTCT.......................................................................................... 20 1 1 1.00 1 1
.................................................AAAGGTAGATAGAACAGGTCTTGA....................................................................................... 24 1 1 1.00 1 1
...................................................AGGTAGCTAGAACAGGTCTTGT....................................................................................... 22 1 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTTGAC...................................................................................... 23 2 1 1.00 1 1
..................................................AAGGTAGATGGAACAGGTCATG........................................................................................ 22 2 1 1.00 1 1
.........................................................................................AGACCTACTTATCTACCAAC................................................... 20 0 1 1.00 1 1
...................................................AGGTAGATAGAACAGGTCTTGAGA..................................................................................... 24 3 2 0.50 1 1
..................................................AAGGTACATCGAACAGGTCATGT....................................................................................... 23 3 3 0.33 1 1
..................................................CAGGTAGATACAACAGGTCTT......................................................................................... 21 2 3 0.33 1 1
...................................................CGGTAGATAGAACAGGTTTTGT....................................................................................... 22 2 4 0.25 1 1

Anti-sense strand reads

TTATCTCAGGAACTTCAGTTCGACTGAGACGAAAATCGGAGGATTTACTTTTCCATCTATCTTGTCCAGAACAAACGTTTTATTTAAGTTCTGGATGAATAGATGGTTGTCGTTACCATGCGAAAGGTAACAGAAGGGTATCTTTTATCCTTATCATTTA

***********************************(((..((....((....(((((((((...((((((((...............))))))))..)))))))))..)).....))...)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:31 AM