ID:

eca-mir-17

 Coordinate:

chr17:61792416-61792474 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.5 -34.3 -34.3

Sense Strand Reads

AGAGAACTTCACCTTGTAAACCTGAAGATTGTGACCAGTCAGAATAATGTCAAAGTGCTTACAGTGCAGGTAGTGATATATGTGCATCTACTGCAGTGAAGGCACTTGTAGCATTATGGTGACAGCTGCCTCGGGGAGCCAAGGGGGGCTTTAAAGCGC

***********************************..((((..(((((((..((((((((.((.(((((.(((((.........)).)))))))).)).))))))))...)))))))..)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................CAAAGTGCTTACAGTGCAGGTAGT..................................................................................... 24 0 1 389.00 389 389
..................................................CAAAGTGCTTACAGTGCAGGTAG...................................................................................... 23 0 2 248.50 497 497
..................................................CAAAGTGCTTACAGTGCAGGTAGA..................................................................................... 24 1 2 61.50 123 123
.........................................................................................ACTGCAGTGAAGGCACTTGTA................................................. 21 0 1 19.00 19 19
..................................................CAAAGTGCTTACAGTGCAGGTA....................................................................................... 22 0 2 16.00 32 32
..................................................CAAAGTGCTTACAGTGCAGGTAA...................................................................................... 23 1 2 14.50 29 29
..................................................CAAAGTGCTTACAGTGCAGGTAT...................................................................................... 23 1 2 13.50 27 27
..................................................CAAAGTGCTTACAGTGCAGGT........................................................................................ 21 0 2 12.50 25 25
..................................................CAAAGTGCTTACAGTGCAGGTAGAAA................................................................................... 26 2 1 12.00 12 12
..................................................CAAAGTGCTTACAGTGCAGGTAGTT.................................................................................... 25 1 2 10.50 21 21
.........................................................................................ACTGCAGTGAAGGCACTTGTAGCT.............................................. 24 1 1 10.00 10 10
..................................................CAAAGTGCTTACAGTGCAGG......................................................................................... 20 0 2 9.50 19 19
..................................................CAAAGTGCTTACAGTGCAGGTAGAA.................................................................................... 25 2 2 7.50 15 15
...................................................AAAGTGCTTACAGTGCAGGTAGT..................................................................................... 23 0 1 7.00 7 7
..................................................CAAAGTGCTTACAGTGCAGGTAGTA.................................................................................... 25 1 1 7.00 7 7
.........................................................................................ACTGCAGTGAAGGCACTTGT.................................................. 20 0 1 6.00 6 6
.........................................................................................ACTGCAGTGAAGGCACTTGTAGC............................................... 23 0 1 5.00 5 5
..................................................CAAAGTGCTTACAGTGCAGGTATT..................................................................................... 24 1 1 5.00 5 5
..................................................CAAAGTGCTTACAGTGCAGGTAAA..................................................................................... 24 2 2 5.00 10 10
...................................................AAAGTGCTTACAGTGCAGGTAG...................................................................................... 22 0 2 5.00 10 10
.........................................................................................ACTGCAGTGAAGGCACTTGTAG................................................ 22 0 1 5.00 5 5
.........................................................................................ACTGCAGTGAAGGCACTTG................................................... 19 0 1 5.00 5 5
..........................................................................................CTGCAGTGAAGGCACTTGTAGC............................................... 22 0 1 4.00 4 4
.................................................TCAAAGTGCTTACAGTGCAGGTAGT..................................................................................... 25 0 1 4.00 4 4
..................................................CAAAGTGCTTACAGTGGAGGTAGT..................................................................................... 24 1 1 4.00 4 4
...................................................AAAGTGCTTACAGTGCAGGTAGA..................................................................................... 23 1 2 4.00 8 8
.................................................TCAAAGTGCTTACAGTGCAGGT........................................................................................ 22 0 2 4.00 8 8
..................................................CAAAGTGCTTACAGTGCAGGTAGAGA................................................................................... 26 1 1 4.00 4 4
..................................................CAAAGTGCTGACAGTGCAGGTAGT..................................................................................... 24 1 1 3.00 3 3
..................................................CAAAGTGCTTACAGTGCAGGTAGTAA................................................................................... 26 1 1 3.00 3 3
..........................................................................................CTGCAGTGAAGGCACTTGTAGCT.............................................. 23 1 1 3.00 3 3
..................................................CAAAGTGCTTACAGTGCAGGTAAT..................................................................................... 24 1 1 3.00 3 3
........................................................................................TACTGCAGTGAAGGCACTTGTA................................................. 22 0 1 3.00 3 3
.................................................TCAAAGTGCTTACAGTGCAGGTAG...................................................................................... 24 0 2 2.50 5 5
..................................................CAAAGTGCTTACAGTGCAGGTGGT..................................................................................... 24 1 1 2.00 2 2
.................................................TCAAAGTGCTTACAGTGCAGGTAGTA.................................................................................... 26 1 1 2.00 2 2
..................................................CAAAGTGCTTACGGTGCAGGTAGT..................................................................................... 24 1 1 2.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAAAA.................................................................................... 25 3 2 2.00 4 4
..................................................CAAAGTGCTTACAGTGCAGGTAGTAAA.................................................................................. 27 2 1 2.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAGAAAT.................................................................................. 27 2 1 2.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAGTAAAT................................................................................. 28 3 1 2.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAGAAC................................................................................... 26 3 2 2.00 4 4
..................................................CAAAGTGCTTACAGTGCAGGTAGTAAT.................................................................................. 27 1 1 2.00 2 2
.........................................................................................ACTGCAGTGAAGGCACTTGTT................................................. 21 1 1 2.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAGAG.................................................................................... 25 1 1 2.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAGTC.................................................................................... 25 1 1 2.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAAGA.................................................................................... 25 3 3 1.67 5 5
..................................................CAAAGTGCTTACAGTGCAGGTAC...................................................................................... 23 1 2 1.50 3 3
..................................................CAAAGTGCTTACAGTGCAGGTAGTATT.................................................................................. 27 2 2 1.50 3 3
..................................................CAAAGTGCTTACAGTGAAGGTAG...................................................................................... 23 1 2 1.50 3 3
..................................................CAAAGTGCTTACAGTGCAGGTGG...................................................................................... 23 1 2 1.50 3 3
..................................................CAAAGTGCTTACAGTGCAGGA........................................................................................ 21 1 2 1.50 3 3
..................................................CAAAGTGCTTAGAGTGCAGGTAG...................................................................................... 23 1 2 1.50 3 3
..................................................CAAAGTGCTTACAGTGGAGGTAG...................................................................................... 23 1 2 1.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTATTT.................................................................................... 25 2 2 1.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAGAGAA.................................................................................. 27 2 1 1.00 1 1
..........................................................................................CTGCAGTGAAGGCACTTGTAGT............................................... 22 1 1 1.00 1 1
.................................................TCAAAGTGCTTACAGTGCAGGTAGTGATA................................................................................. 29 0 1 1.00 1 1
.........................................................................................ACTGCAGTGAAGGCACTTGTAGCTT............................................. 25 1 1 1.00 1 1
..................................................CGAAGTGCTTACAGTGCAGGTAG...................................................................................... 23 1 2 1.00 2 2
..................................................CAAAGTGCTTACAGAGCAGGTAGT..................................................................................... 24 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGTTAGT................................................................................. 28 3 1 1.00 1 1
..........................................................................................CTGCAGTGAAGGCACTTGTAGA............................................... 22 1 1 1.00 1 1
...................................................AAAGTGCTTACAGTGCAGGTATT..................................................................................... 23 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAAG..................................................................................... 24 2 2 1.00 2 2
..................................................CAAAGTGCTTACGGTGCAGGTAG...................................................................................... 23 1 2 1.00 2 2
.................................................TCAAAGTGCTTACAGTGCAGGTAGA..................................................................................... 25 1 2 1.00 2 2
..................................................CAAAGTGCTAACAGTGCAGGTAGT..................................................................................... 24 1 1 1.00 1 1
...................................................AAAGTGCTTACAGTGCAGGTAGAACT.................................................................................. 26 3 2 1.00 2 2
..................................................CAAAGTGCTTAGAGTGCAGGTAGTTA................................................................................... 26 2 1 1.00 1 1
..................................................CAAAGTGCTCATAGTGCAGGTAGAGA................................................................................... 26 3 3 1.00 3 3
..................................................CAAAGTGCTTACAGTGCAGGTTTT..................................................................................... 24 2 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTATAG.................................................................................... 25 2 1 1.00 1 1
.........................................................................................ACTGCAGTGAAGGCACTTGTAGT............................................... 23 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTCGT..................................................................................... 24 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGTTAT.................................................................................. 27 1 1 1.00 1 1
........................................................................................TACTGCAGTGAAGGCACTTGTAAA............................................... 24 2 1 1.00 1 1
.........................................................................................ACTGAAGTGAAGGCACTTGTAGC............................................... 23 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGAGT................................................................................... 26 2 2 1.00 2 2
.................................................TCAAAGTGCTTACAGTGCAGGTT....................................................................................... 23 1 2 1.00 2 2
..........................................................................................CTGCAGTGAAGGCACTTGTAGCA.............................................. 23 0 1 1.00 1 1
.........................................................................................ACTGCAGTGAAGGCACGTGT.................................................. 20 1 1 1.00 1 1
........................................................................................TACTGCAGTGAAGGCACTTGTAAT............................................... 24 2 1 1.00 1 1
.........................................................................................CCTGCAGTGAAGGCACTTGT.................................................. 20 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTTGT..................................................................................... 24 1 1 1.00 1 1
.........................................................................................CCTGCAGTGAAGGCACTTGTAGA............................................... 23 2 1 1.00 1 1
.........................................................................................ACTGCAGTGAAGGCACTTGTAGCA.............................................. 24 0 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGTGATT................................................................................. 28 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTATG..................................................................................... 24 2 2 1.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAGTAGT.................................................................................. 27 2 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGCAGT..................................................................................... 24 1 1 1.00 1 1
.........................................................................................ACTGCAGTGAAGGTACTTGTA................................................. 21 1 1 1.00 1 1
.........................................................................................CCTGCAGTGAAGGCACTTGTA................................................. 21 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGGAGGTAGA..................................................................................... 24 2 2 1.00 2 2
.........................................................................................ACTGCAGTGAAGGCACTTGTAGA............................................... 23 1 1 1.00 1 1
..........................................................................................CTGCAGTGAAGGCACTAGTAGA............................................... 22 2 1 1.00 1 1
..........................................................................................CCGCAGTGAAGGCACTTGTAGCATTT........................................... 26 2 1 1.00 1 1
.........................................................................................ACTGCAGTGAAGGTACTTGTAGA............................................... 23 2 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGTGT................................................................................... 26 1 1 1.00 1 1
..........................................................................................CTGCAGTGAAGGCACTTGTAGCG.............................................. 23 1 1 1.00 1 1
..................................................GAAAGTGCTTACAGTGCAGGTAA...................................................................................... 23 2 2 1.00 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAGTAGTT................................................................................. 28 3 1 1.00 1 1
..................................................CAAAGTGCTGACAGTGCAGGTAGTAAT.................................................................................. 27 2 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGTGAT.................................................................................. 27 0 1 1.00 1 1
.................................................TCAAAGTGCTTACAGTGCAGGTA....................................................................................... 23 0 2 1.00 2 2
.........................................................................................CCTGCAGTGAAGGCACTTGTAGC............................................... 23 1 1 1.00 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGGA.................................................................................... 25 2 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGGAGG......................................................................................... 20 1 2 0.50 1 1
...................................................AAAGTGCTTACAGTGCAGGTAGGA.................................................................................... 24 2 2 0.50 1 1
...................................................AAAGTGCTTACAGTGCAGGTAGAA.................................................................................... 24 2 2 0.50 1 1
.........................................................................................CCTGCAGTGAAGGCACTTG................................................... 19 1 2 0.50 1 1
..................................................CAAAGTCCTTACAGTGCAGGTAGA..................................................................................... 24 2 2 0.50 1 1
....................................................AAGTGCTTACAGTGCAGGT........................................................................................ 19 0 2 0.50 1 1
..................................................CAAAGTGCTAACAGTGCAGGTAGA..................................................................................... 24 2 2 0.50 1 1
..................................................CAAAGTGCTTACGGTGCAGGTAGA..................................................................................... 24 2 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGCTAG...................................................................................... 23 1 2 0.50 1 1
..................................................CAAAGTGCTTACGGTGCAGGTA....................................................................................... 22 1 2 0.50 1 1
..................................................CAAAGTTCTTACAGTGCAGGTAT...................................................................................... 23 2 2 0.50 1 1
.................................................ACAAAGTGCTTACAGTGCAGGT........................................................................................ 22 1 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGAAG................................................................................... 26 3 2 0.50 1 1
..................................................CAAAGTACTTACAGTGCAGGTAG...................................................................................... 23 1 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGG..................................................................................... 24 1 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGAA....................................................................................... 22 1 2 0.50 1 1
..................................................CAAAGTGCTAACAGTGCAGGTAG...................................................................................... 23 1 2 0.50 1 1
.........................................................................................ACTGCAGTGAAAGCACTTGTAGCT.............................................. 24 2 2 0.50 1 1
..................................................CAAAGTTCTAACAGTGCAGGTAGA..................................................................................... 24 3 2 0.50 1 1
.........................................................................................CCTGCAGTGAAGGCACTTGTAA................................................ 22 2 2 0.50 1 1
..................................................CAAAGTACTGACAGTGCAGGTAG...................................................................................... 23 2 2 0.50 1 1
..................................................CAAAGTGCTCACAGTGCAGGTAGT..................................................................................... 24 1 2 0.50 1 1
...................................................AAAGTGCTTACAGTGCAGGTAT...................................................................................... 22 1 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGAT........................................................................................ 21 1 2 0.50 1 1
.................................................TCAAAGTGCTTACAGTGCAGGTAAA..................................................................................... 25 2 2 0.50 1 1
...................................................CAAGTGCTTACAGTGCAGGTAG...................................................................................... 22 1 2 0.50 1 1
..................................................CAAAGTGCTTACCGTGCAGGTAG...................................................................................... 23 1 2 0.50 1 1
...................................................AAAGTGCTTACAGTGCAGGT........................................................................................ 20 0 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGAAGT.................................................................................. 27 3 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGTTG...................................................................................... 23 1 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGATAG...................................................................................... 23 1 2 0.50 1 1
..................................................CATAGTGCTTACAGTGCAGGTAG...................................................................................... 23 1 2 0.50 1 1
..................................................CAAGGTGCTTACAGTGCAGGT........................................................................................ 21 1 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGTATA..................................................................................... 24 2 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGATAT.................................................................................. 27 2 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGTTA...................................................................................... 23 2 2 0.50 1 1
..................................................CAAAGTGCTGACAGTGCAGGTAG...................................................................................... 23 1 2 0.50 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGAAAA.................................................................................. 27 3 2 0.50 1 1
..................................................CAAAGTGCTTACAGAGCAGGTAG...................................................................................... 23 1 2 0.50 1 1
...................................................AAAGTGCTTACAGTGCAGGTAA...................................................................................... 22 1 2 0.50 1 1
...................................................AAAGTGCTTACAGTGCAGGTA....................................................................................... 21 0 2 0.50 1 1
.........................................................................................ACTGCAGTGATGGCACTTG................................................... 19 1 3 0.33 1 1
..................................................CAAAGTGCTCACAGTGCAGGTAG...................................................................................... 23 1 3 0.33 1 1
..................................................CAAAGTGCTTACAGTGTAGGTAA...................................................................................... 23 2 3 0.33 1 1
..................................................CAAAGTGCTTACAGTGCAGGTGA...................................................................................... 23 2 3 0.33 1 1
..................................................CAAAGTGCTCACAGTGCAGCTAG...................................................................................... 23 2 3 0.33 1 1
..................................................CAAAGTGCTAACAGTGCAGATAG...................................................................................... 23 2 3 0.33 1 1
..................................................CAAAGTGCTTACAGTGCAGGTGGG..................................................................................... 24 2 3 0.33 1 1
..................................................CAAAGTGCTTAAAGTGCAGGTAGTT.................................................................................... 25 2 3 0.33 1 1
..................................................CAAAGTGCTTACAGTGCAGGTAGTATTT................................................................................. 28 3 3 0.33 1 1
.................................................TCAAAGTGCTTACAGTGCAGT......................................................................................... 21 1 3 0.33 1 1
..................................................CAAAGTGCTTACAGTGCAGAGA....................................................................................... 22 2 6 0.33 2 2
..................................................CAAAGTGCTTACAGTGCAGGTAATT.................................................................................... 25 2 3 0.33 1 1
..................................................CAAAGTGCTTACAGTGCAGGTATAA.................................................................................... 25 3 3 0.33 1 1
..................................................CAAAGTGCTTACAGTGCAGGTGGA..................................................................................... 24 2 3 0.33 1 1
.................................................TCAAAGTGCTTACAGTGCAGGAT....................................................................................... 23 2 4 0.25 1 1
...................................................CAAGTGCTTACAGTGCAGGTAGA..................................................................................... 23 2 4 0.25 1 1
..................................................CAAAGTGCTTACAGTGCAGAAA....................................................................................... 22 2 4 0.25 1 1
....................................................CAGTGCTTACAGTGCAGGTAG...................................................................................... 21 1 4 0.25 1 1
...................................................AAAGTGCTTACAGTGCAGGA........................................................................................ 20 1 4 0.25 1 1
..................................................CAAAGTGCTTACAGTGCAGGAT....................................................................................... 22 2 5 0.20 1 1
..................................................CAAAGTGCTTACAGTGCAGGTGGAGT................................................................................... 26 3 5 0.20 1 1
..................................................CAAAGTGCTAACAGTGCAGATAT...................................................................................... 23 3 15 0.07 1 1

Anti-sense strand reads

TCTCTTGAAGTGGAACATTTGGACTTCTAACACTGGTCAGTCTTATTACAGTTTCACGAATGTCACGTCCATCACTATATACACGTAGATGACGTCACTTCCGTGAACATCGTAATACCACTGTCGACGGAGCCCCTCGGTTCCCCCCGAAATTTCGCG

***********************************..((((..(((((((..((((((((.((.(((((.(((((.........)).)))))))).)).))))))))...)))))))..)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:45 AM