ID:

eca-mir-154b

 Coordinate:

chr24:42930413-42930553 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.2

Sense Strand Reads

CCCCATCCACGGGAACCTTCCTGGAGGTGGTGCCAACTCAGGGGAGGCAGTGCAGGTTTTCCTACCAGAGCTACTCGGCGGTGCTTGAAGAGAGGTCTTCCATGATGCATTCGCTTTATTTTTCGACGAATCATACATGGTTGACCTTTTTTTAAGTATCAAATCTGGCCTTAAAGCACCCTGGGACGAGGCCAACTTTGGGAACTAGAGTTGGCGTGCGCACGCCTGAATGGATGGTCAA

***************************************************************************....((((((((((((((((((..((((((((.(((((.............)))))))).)))))..))))))))))))))))))......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........................................................................................AGAGGTCTTCCATGATGCATTCG................................................................................................................................ 23 0 1 42.00 42 42
..........................................................................................AGAGGTCTTCCATGATGCATTCGT............................................................................................................................... 24 1 1 15.00 15 15
..........................................................................................AGAGGTCTTCCATGATGCATTC................................................................................................................................. 22 0 1 10.00 10 10
..........................................................................................CGAGGTCTTCCATGATGCATTCG................................................................................................................................ 23 1 1 4.00 4 4
..........................................................................................AGAGGTCTTCCATGATGCATT.................................................................................................................................. 21 0 1 3.00 3 3
..........................................................................................CGAGGTCTTCCATGATGCATTCGT............................................................................................................................... 24 2 1 2.00 2 2
..........................................................................................AGAGGTCTTCCATGATGCATTCGTT.............................................................................................................................. 25 1 1 2.00 2 2
...........................................................................................GAGGTCTTCCATGATGCATTCG................................................................................................................................ 22 0 1 1.00 1 1
..........................................................................................AGAGGTCTTCCATGATGCAGTCGT............................................................................................................................... 24 2 1 1.00 1 1
..........................................................................................AGAGGTCTTCCATGATTCATTCGT............................................................................................................................... 24 2 1 1.00 1 1
..........................................................................................AGAGGTCTTCCAGGATGCATTC................................................................................................................................. 22 1 1 1.00 1 1
..........................................................................................GGAGGTCTTCCATGATGCATTCG................................................................................................................................ 23 1 1 1.00 1 1
.................................................................................................................................ATCATACATGGTTGACCTTTTT.......................................................................................... 22 0 1 1.00 1 1
..........................................................................................AGAGGTCTTCCATGATGCATTCGAAA............................................................................................................................. 26 3 1 1.00 1 1
..........................................................................................AGAGGTCTTCCATGATGC..................................................................................................................................... 18 0 1 1.00 1 1
..........................................................................................AGAGGTGTTGCATGATGCAGTCG................................................................................................................................ 23 3 1 1.00 1 1
..........................................................................................CGAGGTCTTCCGTGATGCATTAG................................................................................................................................ 23 3 1 1.00 1 1
..........................................................................................CGAGGTCTTCCATGATGCATT.................................................................................................................................. 21 1 1 1.00 1 1
..........................................................................................AGAGGTCTTCCATGATGCAGTC................................................................................................................................. 22 1 1 1.00 1 1
..........................................................................................AGAGGTCTTCCATGATGCATTCAT............................................................................................................................... 24 2 1 1.00 1 1
..........................................................................................AGAGGTCTTCCGTGATGCATTCG................................................................................................................................ 23 1 1 1.00 1 1
..........................................................................................AGAGGTCTTCCATGGTGCATTAG................................................................................................................................ 23 2 1 1.00 1 1
................................................................................................................................AATCATACATGGTTGACCTTTTT.......................................................................................... 23 0 1 1.00 1 1

Anti-sense strand reads

GGGGTAGGTGCCCTTGGAAGGACCTCCACCACGGTTGAGTCCCCTCCGTCACGTCCAAAAGGATGGTCTCGATGAGCCGCCACGAACTTCTCTCCAGAAGGTACTACGTAAGCGAAATAAAAAGCTGCTTAGTATGTACCAACTGGAAAAAAATTCATAGTTTAGACCGGAATTTCGTGGGACCCTGCTCCGGTTGAAACCCTTGATCTCAACCGCACGCGTGCGGACTTACCTACCAGTT

***************************************************************************....((((((((((((((((((..((((((((.(((((.............)))))))).)))))..))))))))))))))))))......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM