ID:

eca-mir-154a

 Coordinate:

chr24:42930163-42930226 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.3 -31.1 -31.1

Sense Strand Reads

TTTGGAGAAGAGGCACTGGCACCTGGTCGGTGCCAATCCGCGGTACTTGGAGATAGGTTATCCGTGTTGCCTTCGCTTTATCTGTGACGAATCATACACGGTTCACCTATTTTTCAGTACCAAATCCCACTTCAGGGCGGGGACTTGGTGTCAGCTCCTCTCCA

**************************************...((((((.((((((((((...((((((((...((((.......)))).....)).))))))...)))))))))).)))))).....************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................TAGGTTATCCGTGTTGCCTTCG......................................................................................... 22 0 1 25.00 25 25
.........................................................................................AATCATACACGGTTCACCTATT..................................................... 22 0 1 7.00 7 7
.....................................................TAGGTTATCCGTGTTGCCTTC.......................................................................................... 21 0 1 3.00 3 3
..........................................................TATCCGTGTTGCCTTCGCTTTAT................................................................................... 23 0 1 2.00 2 2
.....................................................TAGGTTATCCGTGTTGCCTTCGCT....................................................................................... 24 0 1 2.00 2 2
.....................................................TAGGTTATCCGTGTTGCCTTCGT........................................................................................ 23 1 1 1.00 1 1
.....................................................TAGGTTATCCGTGTTGCCTTCGCTTTATC.................................................................................. 29 0 1 1.00 1 1
.....................................................TAGGTTATCCGTGTTGCCTTCGA........................................................................................ 23 1 1 1.00 1 1
.....................................................TAGGTTATCCGTGTTGCCTTCAC........................................................................................ 23 1 1 1.00 1 1
.....................................................TAGGTTATCCGTGTTGCCTTCGC........................................................................................ 23 0 1 1.00 1 1
.....................................................TAGGTTATCCGTGTTGCTTTCG......................................................................................... 22 1 1 1.00 1 1
.....................................................TAGGTTATCCGTGTTGACTTCG......................................................................................... 22 1 1 1.00 1 1
.....................................................TAGGTTATCCGTGTCGGCTTCG......................................................................................... 22 2 1 1.00 1 1
.....................................................TAGGTTATCCGTGTTGCCT............................................................................................ 19 0 1 1.00 1 1
.....................................................TAGGTTATCCGTGTTGCCTTCGCTTTATCTGTGACT........................................................................... 36 1 1 1.00 1 1

Anti-sense strand reads

AAACCTCTTCTCCGTGACCGTGGACCAGCCACGGTTAGGCGCCATGAACCTCTATCCAATAGGCACAACGGAAGCGAAATAGACACTGCTTAGTATGTGCCAAGTGGATAAAAAGTCATGGTTTAGGGTGAAGTCCCGCCCCTGAACCACAGTCGAGGAGAGGT

**************************************...((((((.((((((((((...((((((((...((((.......)))).....)).))))))...)))))))))).)))))).....************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:55 AM