ID:

eca-mir-1543

 Coordinate:

chr14:37373334-37373464 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.0 -33.0 -33.0

Sense Strand Reads

TGGTGGAAGAGTAAACGCTGCCTTATGCTGAGGTATGGCTCCAAGCACTGTTTTGGTGTTGTGGCTGAGTACCTTTGGGCAGTGTTTTGCACCTCTGAGAGTGGAGTAACTCCTCCTGTGGAGTTGGTCCTAGTCTGGGTGCAAACAATTTATTTCTGTTAGAAAAGGACCCTGTCTTAAGGACAGCCTATCATTCTTTTCTTCTTTGGATCCTAGATACCTTCACCTAAG

**********************************************************************.......((((((((((.((((((..((....(((.(((((((......))))))).)))...)).)))))))))))........))))).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTC....................................................................................................................... 27 0 1 33.00 33 33
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTC.................................................................................................................... 30 0 1 11.00 11 11
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCC................................................................................................................... 31 0 1 8.00 8 8
......................................................................................TTGCACCTCTGAGAGTGGAGTAACTCCTCCTT................................................................................................................. 32 1 1 3.00 3 3
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCCT.................................................................................................................. 32 0 1 3.00 3 3
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTT.................................................................................................................... 30 1 1 3.00 3 3
.....................................................................................TTTGCACCTCTGAGAGTGGAGA............................................................................................................................ 22 1 1 2.00 2 2
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAAT......................................................................................................................... 25 1 1 2.00 2 2
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCC...................................................................................................................... 28 0 1 2.00 2 2
.....................................................................................TTTGCACCTCTGAGAGTGGAGT............................................................................................................................ 22 0 1 2.00 2 2
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACT........................................................................................................................ 26 0 1 2.00 2 2
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCA................................................................................................................... 31 1 1 2.00 2 2
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCCTTT................................................................................................................ 34 1 1 2.00 2 2
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCCTGTGG.............................................................................................................. 36 0 1 1.00 1 1
.....................................................................................TTTGCACCTTTGAGAGTGGAGTAACTC....................................................................................................................... 27 1 1 1.00 1 1
....................................................................................TTTTGCACCTCTGAGAGTGGAGTAACTC....................................................................................................................... 28 0 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCCTA................................................................................................................. 33 1 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGGGTGGAGTAACTCCTCC................................................................................................................... 31 1 1 1.00 1 1
.....................................................................................TTTGCAACTGTGAGAGTGGAGTAACTC....................................................................................................................... 27 2 1 1.00 1 1
.....................................................................................TTTGCACCTGTGAGAGTGGAGTAACTC....................................................................................................................... 27 1 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCCTG................................................................................................................. 33 0 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTTT................................................................................................................... 31 2 1 1.00 1 1
.....................................................................................TTTGCAACTCTGAGAGTGGAGTAACTCCTCTTT................................................................................................................. 33 3 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGAGTGGAG............................................................................................................................. 21 0 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCCATT................................................................................................................ 34 2 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACTCCTCCTT................................................................................................................. 33 1 1 1.00 1 1
....................................................................................TTTTGCACCTCTGAGAGTGGAGTAACTCCTCCTTT................................................................................................................ 35 1 1 1.00 1 1
...........................................................................................................................TTGGTCCTAGTCTGGGTGCAAAC..................................................................................... 23 0 1 1.00 1 1
....................................................................................CTTTGCACCTCTGAGAGTGGAGTAACTCCTC.................................................................................................................... 31 1 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGAGGGGAGTAACT........................................................................................................................ 26 1 1 1.00 1 1
.....................................................................................TTTGCACCTCTGAGAGTGGAGTAACCC....................................................................................................................... 27 1 1 1.00 1 1
.....................................................................................TTTGCAACTCTGAGAGTGGAGTAACTCC...................................................................................................................... 28 1 1 1.00 1 1
...........................................................................................................................TTGGTCCTAGTCTGGGTGCAAACT.................................................................................... 24 1 1 1.00 1 1

Anti-sense strand reads

ACCACCTTCTCATTTGCGACGGAATACGACTCCATACCGAGGTTCGTGACAAAACCACAACACCGACTCATGGAAACCCGTCACAAAACGTGGAGACTCTCACCTCATTGAGGAGGACACCTCAACCAGGATCAGACCCACGTTTGTTAAATAAAGACAATCTTTTCCTGGGACAGAATTCCTGTCGGATAGTAAGAAAAGAAGAAACCTAGGATCTATGGAAGTGGATTC

**********************************************************************.......((((((((((.((((((..((....(((.(((((((......))))))).)))...)).)))))))))))........))))).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................................................................CAGGATCAGACCCACGTTTGTTAAATAA............................................................................. 28 0 1 1.00 1 1

Generated: 09/01/2015 at 11:41 AM