ID:

eca-mir-144

 Coordinate:

chr11:42750581-42750646 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.1 -39.7 -39.5

Sense Strand Reads

CTGCCACAGTGCTCTCCAAGCCATGCTCCCTGAGCCCCCTGCAGGTCCCTGGCTGGGATATCATCATATACTGTAAGTTTGCGATGAGACACTACAGTATAGATGATGTACTAGTCCGGGTACCCCCAGCTCTGGAGCCTGATGAGGAGGGCAGGGGATGCTGCAA

****************************************...((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).))).)))...*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................GGATATCATCATATACTGTAAGT........................................................................................ 23 0 1 22.00 22 22
............................................................................................TACAGTATAGATGATGTACT...................................................... 20 0 1 10.00 10 10
............................................................................................TACAGTATAGATGATG.......................................................... 16 0 2 7.50 15 15
...........................................................................................CTACAGTATAGATGATGTACT...................................................... 21 0 1 6.00 6 6
............................................................................................TACAGTATAGATGATGTA........................................................ 18 0 1 5.00 5 5
............................................................................................TACAGTATAGATGATGTAC....................................................... 19 0 1 5.00 5 5
.......................................................GGATATCATCATATACTGTAAG......................................................................................... 22 0 1 4.00 4 4
........................................................GATATCATCATATACTGTAAG......................................................................................... 21 0 1 2.00 2 2
...........................................................................................CTACAGTATAGATGATGTAC....................................................... 20 0 1 2.00 2 2
.......................................................AGATATCATCATATACTGTAAGT........................................................................................ 23 1 1 1.00 1 1
.......................................................GGATATCATCATATACTGT............................................................................................ 19 0 1 1.00 1 1
............................................................................................TACAGTGTAGATGATGTACT...................................................... 20 1 1 1.00 1 1
............................................................................................TACAGTATAGATGATGT......................................................... 17 0 1 1.00 1 1
.......................................................GGATATCATCATGTACTGTAAGT........................................................................................ 23 1 1 1.00 1 1
.......................................................GGATATCATCATATGCGGTAAGT........................................................................................ 23 2 1 1.00 1 1
.......................................................GGATATCATCATATACTGTAAGTT....................................................................................... 24 0 1 1.00 1 1
.......................................................GGATATCATCATATACTGTAA.......................................................................................... 21 0 1 1.00 1 1
...........................................................................................CTACAGTATAGATGATGT......................................................... 18 0 1 1.00 1 1
.......................................................GGATATCATCATATACTGTTAGT........................................................................................ 23 1 1 1.00 1 1
............................................................................................TACAGTATAGATGATGTACG...................................................... 20 1 1 1.00 1 1
.......................................................GGATATCATCATATACTGTA........................................................................................... 20 0 1 1.00 1 1

Anti-sense strand reads

GACGGTGTCACGAGAGGTTCGGTACGAGGGACTCGGGGGACGTCCAGGGACCGACCCTATAGTAGTATATGACATTCAAACGCTACTCTGTGATGTCATATCTACTACATGATCAGGCCCATGGGGGTCGAGACCTCGGACTACTCCTCCCGTCCCCTACGACGTT

***************************************...((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).))).)))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:36 AM