ID:

eca-mir-142

 Coordinate:

chr11:32583173-32583236 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.5 -43.2 -43.1

Sense Strand Reads

AGCGGGCGGCCTGAAGAGTACCCGCAGACGGACAGACAGACAGTGCAGTCACCCATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTGGGCTTCGGAGACCACGCCGCCGCCGCCCGCCACCGTCTT

**************************************.((((((((.(((.(((((((((((.(((((((.......(((((....)))))))))))).))))))))))).))).))))))))...************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................CATAAAGTAGAAAGCACTACT.......................................................................................... 21 0 1 2061.00 2061 2061
...................................................CCCATAAAGTAGAAAGCACT............................................................................................. 20 0 1 2023.00 2023 2023
...................................................CCCATAAAGTAGAAAGCACTAC........................................................................................... 22 0 1 254.00 254 254
...................................................CCCATAAAGTAGAAAGCACTA............................................................................................ 21 0 1 235.00 235 235
.....................................................CATAAAGTAGAAAGCACTAC........................................................................................... 20 0 1 127.00 127 127
.........................................................................................TGTAGTGTTTCCTACTTTATGGA.................................................... 23 0 1 80.00 80 80
.....................................................CATAAAGTAGAAAGCACT............................................................................................. 18 0 2 76.50 153 153
.....................................................CATAAAGTAGAAAGCACTA............................................................................................ 19 0 1 58.00 58 58
...................................................CCCATAAAGTAGAAAGCACTAA........................................................................................... 22 1 1 53.00 53 53
............................................................................................AGTGTTTCCTACTTTATGGATG.................................................. 22 0 1 46.00 46 46
...................................................CCCATAAAGTAGAAAGCACTAT........................................................................................... 22 1 1 43.00 43 43
...................................................CCCATAAAGTAGAAAGCAC.............................................................................................. 19 0 1 31.00 31 31
...................................................CCCATAAAGTAGAAAGCACTACA.......................................................................................... 23 1 1 31.00 31 31
.....................................................CATAAAGTAGAAAGCACTACTA......................................................................................... 22 0 1 31.00 31 31
......................................................ATAAAGTAGAAAGCACTACT.......................................................................................... 20 0 1 21.00 21 21
.....................................................CATAAAGTAGAAAGCACTAGT.......................................................................................... 21 1 1 20.00 20 20
..........................................................................................GTAGTGTTTCCTACTTTATGGA.................................................... 22 0 1 18.00 18 18
...................................................CCCATAAAGTAGAAAGCACTACT.......................................................................................... 23 0 1 16.00 16 16
.........................................................................................TGTAGTGTTTCCTACTTTATGGT.................................................... 23 1 1 13.00 13 13
..........................................................................................GTAGTGTTTCCTACTTTATGGT.................................................... 22 1 1 12.00 12 12
.........................................................................................TGTAGTGTTTCCTACTTTATGG..................................................... 22 0 1 12.00 12 12
...................................................CCCATAAAGTAGAAAGCA............................................................................................... 18 0 1 11.00 11 11
.....................................................CATAAAGTAGAAGGCACTACT.......................................................................................... 21 1 1 11.00 11 11
...................................................CCCATAAAGTAGAAAGCACG............................................................................................. 20 1 1 10.00 10 10
.........................................................................................TGTAGTGTTTCCTACTTTATGGAT................................................... 24 0 1 10.00 10 10
...................................................CCCATAAAGTAGAAAGGACT............................................................................................. 20 1 1 9.00 9 9
.....................................................CATAAAGTAGAAAGCAGTACT.......................................................................................... 21 1 1 8.00 8 8
...................................................CCCATAAAGTAGAAAGCACTACG.......................................................................................... 23 1 1 8.00 8 8
...................................................CCCATAAAGTAGAAAGCACTAG........................................................................................... 22 1 1 7.00 7 7
.....................................................CATAAAGTAGAAAGGACTACT.......................................................................................... 21 1 1 7.00 7 7
.....................................................CATAAAGTAGAAAGCACTAAT.......................................................................................... 21 1 2 6.50 13 13
...................................................CCCATAAAGTAGAAAGCACTATT.......................................................................................... 23 1 1 6.00 6 6
...................................................CCCATAAAGTAGAAAGCACC............................................................................................. 20 1 1 6.00 6 6
...................................................CCCATAAAGTAGAAAGCACA............................................................................................. 20 1 1 5.00 5 5
...................................................CCCATAAAGGAGAAAGCACT............................................................................................. 20 1 1 5.00 5 5
.....................................................CATAAAGTAGAAAGCATTACT.......................................................................................... 21 1 1 5.00 5 5
.....................................................CATAAAGTAGAGAGCACTACT.......................................................................................... 21 1 2 4.50 9 9
.....................................................CATAAAGTAGAAAGCACTACA.......................................................................................... 21 1 2 4.50 9 9
.....................................................CATAAAGTAGAAAGCACTACTAA........................................................................................ 23 0 1 4.00 4 4
..........................................................................................GTAGTGTTTCCTACTTTATGGAT................................................... 23 0 1 4.00 4 4
.....................................................CATAAAGTAGAAAGCAATACT.......................................................................................... 21 1 1 4.00 4 4
.....................................................CATAAAGTAAAAAGCACTACT.......................................................................................... 21 1 1 4.00 4 4
...................................................CCCATAAAGTAGCAAGCACT............................................................................................. 20 1 1 4.00 4 4
..........................................................................................GTAGTGTTTCCTACTTTATGG..................................................... 21 0 1 4.00 4 4
...................................................CCCATAAAGTAGAAAGAACT............................................................................................. 20 1 2 4.00 8 8
...................................................CCCATAAAGTAGGAAGCACT............................................................................................. 20 1 2 3.50 7 7
...................................................CCCATAAAGTAGAAAGCACTAAA.......................................................................................... 23 2 3 3.33 10 10
...................................................CCCATAAAGTAGAAAGCACTAGA.......................................................................................... 23 2 1 3.00 3 3
.....................................................CATAAAGTAGAAAGCACTACTAACAGCACTGGAGGG........................................................................... 36 0 1 3.00 3 3
.........................................................................................TGTAGTGTTTCCTACTTTATGGAG................................................... 24 1 1 3.00 3 3
.........................................................................................TGTAGTGTTTCCTACTTTATGGAA................................................... 24 1 1 3.00 3 3
...................................................CCCATAAAGTAGAAGGCACT............................................................................................. 20 1 2 3.00 6 6
...................................................CCCATAAAGTAGAAAGCACGAC........................................................................................... 22 1 1 3.00 3 3
.....................................................CATAAAGTAGAAAGCACTACTAACAGCACTGGAGTT........................................................................... 36 2 1 3.00 3 3
...................................................CCCATAAAGTACAAAGCACT............................................................................................. 20 1 1 3.00 3 3
...................................................CCCATAAAGTAGAAAGCACTACC.......................................................................................... 23 1 1 3.00 3 3
.........................................................................................TGTAGTGTTTCCTACTTTATGGATT.................................................. 25 1 1 3.00 3 3
...................................................CCCATAAAGTAGAAAGCACAAC........................................................................................... 22 1 1 2.00 2 2
.....................................................CATAAAGTAGAAAGCACTATT.......................................................................................... 21 1 2 2.00 4 4
.....................................................CATAAAGGAGAAAGCACTACT.......................................................................................... 21 1 1 2.00 2 2
.........................................................................................TGTAGTGTTTCCTACTTTATGGAAA.................................................. 25 2 1 2.00 2 2
............................................................................................AGTGTTTCCTACTTTATGGATA.................................................. 22 1 1 2.00 2 2
...................................................CCCATAAAGTAGAAAGC................................................................................................ 17 0 1 2.00 2 2
..................................................................................TGGAGGGTGTAGTGTTTCCTACT........................................................... 23 0 1 2.00 2 2
.........................................................................................TGTAGTGTTTCCTACTTTATGGACT.................................................. 25 2 1 2.00 2 2
.....................................................AATAAAGTAGAAAGCACTACT.......................................................................................... 21 1 1 2.00 2 2
...................................................CCCATAAAGAAGAAAGCACT............................................................................................. 20 1 1 2.00 2 2
.....................................................TATAAAGTAGAAAGCACTACT.......................................................................................... 21 1 1 2.00 2 2
...................................................TCCATAAAGTAGAAAGCACT............................................................................................. 20 1 1 2.00 2 2
.........................................................................................TGTAGTGTTTCCTACTTTA........................................................ 19 0 1 2.00 2 2
...................................................GCCATAAAGTAGAAAGCACT............................................................................................. 20 1 1 2.00 2 2
.....................................................CATAAAGTAGAAAGCACTAA........................................................................................... 20 1 2 2.00 4 4
.....................................................CATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGT.......................................................................... 37 0 1 2.00 2 2
............................................................................................CGTGTTTCCTACTTTATGGATG.................................................. 22 1 1 2.00 2 2
............................................................................................AGTGTTTCCTACTTTATGGATT.................................................. 22 1 1 2.00 2 2
...................................................CCCATAAAGTAGAAAGGACTAC........................................................................................... 22 1 1 2.00 2 2
...................................................CCCATAAAGTAGAAAGCACTT............................................................................................ 21 1 1 2.00 2 2
...................................................CCCATAGAGTAGAAAGCACT............................................................................................. 20 1 2 2.00 4 4
...................................................CCCATAAAGCAGAAAGCACT............................................................................................. 20 1 3 1.33 4 4
.....................................................CATAAACTAGAAAGCACTACT.......................................................................................... 21 1 1 1.00 1 1
....................................................CCATAAAGTAGAAAGCACTA............................................................................................ 20 0 1 1.00 1 1
.....................................................CATAAAGTAGAACGCACTACT.......................................................................................... 21 1 1 1.00 1 1
.........................................................................................TGTAGTGTTTTCTACTTTATGGA.................................................... 23 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAGGAACTAC........................................................................................... 22 2 1 1.00 1 1
...................................................CCCATAAAGTAGAAAGCACAAA........................................................................................... 22 2 1 1.00 1 1
...........................................................................................GAGTGTTTCCTACTTTATGGAT................................................... 22 1 1 1.00 1 1
...................................................CCCATAAAGTGGAAAGCACT............................................................................................. 20 1 2 1.00 2 2
....................................................CCATAAAGTAGAAAGCACT............................................................................................. 19 0 1 1.00 1 1
..........................................................................................GTAGTGTTTCCTACTTTATGGATT.................................................. 24 1 1 1.00 1 1
.........................................................................................TGTGGTGTTTCCTACTTTATGG..................................................... 22 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAAGCACTACTG......................................................................................... 24 1 1 1.00 1 1
...................................................CCCATAAAGTGGAAAGCACTA............................................................................................ 21 1 1 1.00 1 1
...........................................................................................TAGTGTTTCCTACTTTATGGA.................................................... 21 0 1 1.00 1 1
......................................................ATAAAGTAGAAAGCACTACTAA........................................................................................ 22 0 1 1.00 1 1
......................................................ATAAAGTAGAAAGCACGACT.......................................................................................... 20 1 1 1.00 1 1
............................................................................................CGTGTTTCATACTTTATGGAT................................................... 21 2 1 1.00 1 1
...................................................CCCATAGAGGAGAAAGCACTAC........................................................................................... 22 2 1 1.00 1 1
.....................................................CATAAAGTAGAAAGCACTAGTA......................................................................................... 22 1 1 1.00 1 1
......................................................ATAAAGTAGAAAGCACTACG.......................................................................................... 20 1 2 1.00 2 2
.........................................................................................CGTAGTGTTTCCTACTTTATGGA.................................................... 23 1 1 1.00 1 1
.........................................................................................TGTAGTGTTTCCTACTTTATGGACA.................................................. 25 2 1 1.00 1 1
.........................................................................................TGTAGTGTTTCCTACTTTATGGTA................................................... 24 2 2 1.00 2 2
...........................................................................................TAGTGTTTCCTACTTTATGGATT.................................................. 23 1 1 1.00 1 1
.....................................................GATAAAGTAGAAAGCACTACT.......................................................................................... 21 1 1 1.00 1 1
...................................................CCCATAAAGTAAAAAGCACT............................................................................................. 20 1 2 1.00 2 2
..........................................................................................GTAGTGTTTCCTACTTTATGGAA................................................... 23 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAAGTACT............................................................................................. 20 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAGGCACTA............................................................................................ 21 1 1 1.00 1 1
......................................................CTAAAGTAGAAAGCACTACTAACAGCACTGGAGGGG.......................................................................... 36 2 1 1.00 1 1
..........................................................................................GTAGTGTTTCCTACTTTA........................................................ 18 0 1 1.00 1 1
............................................................................................AGTGTTTCCTACTTTAGGGATG.................................................. 22 1 1 1.00 1 1
...................................................CCCATAAAGCAGAAAGCACTA............................................................................................ 21 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAAGCACTACAG......................................................................................... 24 2 1 1.00 1 1
................................................................................................................TGAGTGTACTGTGGGCTTCGGAGACCACGCCGCCGCC............... 37 0 1 1.00 1 1
.....................................................CATAAAGTAGAAAGCACTACTAT........................................................................................ 23 1 1 1.00 1 1
..........................................................................................GTAGTGTTTCCTACTTTATGGATA.................................................. 24 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAAGCACCAC........................................................................................... 22 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAAGAACTAC........................................................................................... 22 1 1 1.00 1 1
.....................................................CATAAAGAAGAAAGCACTACT.......................................................................................... 21 1 1 1.00 1 1
.....................................................CATAAAGTAGAAAGCACTACTAACAGCACTGGA.............................................................................. 33 0 1 1.00 1 1
.........................................................................................TGTAGTGTTTCCTACTTTATGCA.................................................... 23 1 1 1.00 1 1
.....................................................CATAAAGTAGAAAGAACTACT.......................................................................................... 21 1 1 1.00 1 1
.........................................................................................TGTAGTGTTTCCTACTTTATGA..................................................... 22 1 1 1.00 1 1
.....................................................CATAAAGTAGAATGCACTACT.......................................................................................... 21 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAAGCATTA............................................................................................ 21 1 1 1.00 1 1
.........................................................................................TGTAGTGTTTCCTACTTTATGGG.................................................... 23 1 1 1.00 1 1
.....................................................CATAAAGTAGAAAGCACTACGA......................................................................................... 22 1 1 1.00 1 1
...................................................CCCATAAAATAGAAAGCACTAC........................................................................................... 22 1 1 1.00 1 1
...................................................CCCATAAAGTAGAAAGCACAA............................................................................................ 21 1 1 1.00 1 1
............................................................................................AGTGTTTCCTACTTTATGGAT................................................... 21 0 1 1.00 1 1
....................................................CCATAAAGTAGAAAGCACTAC........................................................................................... 21 0 1 1.00 1 1
...................................................CCCATAAAGTAGGAAGCACTA............................................................................................ 21 1 2 1.00 2 2
............................................................................................CGTGTTTCCTACTTTATGGATT.................................................. 22 2 1 1.00 1 1
...................................................GCCATAAAGTAGAAAGCACTA............................................................................................ 21 1 1 1.00 1 1
..........................................................................................GTAGTGTTTCCTACTTTATGGG.................................................... 22 1 1 1.00 1 1
..........................................................................................GTAGTGTTTCCTACTTTATGGAC................................................... 23 1 1 1.00 1 1
...........................................................................................TAGTGTTTCCTACTTTATGGAT................................................... 22 0 1 1.00 1 1
......................................................ATAAAGTAGAAAGCACTACTA......................................................................................... 21 0 1 1.00 1 1
.....................................................CATAAAGTAGAAAGCACTACTT......................................................................................... 22 1 1 1.00 1 1
...................................................CCCATAAAGTAGGAAGCACTAC........................................................................................... 22 1 1 1.00 1 1
.....................................................CATAAAGTAGGAAGCACTACT.......................................................................................... 21 1 2 1.00 2 2
.....................................................CATAAAGTACAAAGCACTACT.......................................................................................... 21 1 1 1.00 1 1
......................................................ATAAAGTAGAAAGCACTAC........................................................................................... 19 0 1 1.00 1 1
.....................................................CATAAAGTAGAAAGCACTGCT.......................................................................................... 21 1 1 1.00 1 1
...................................................CCCACAAAGTAGAAAGCACTA............................................................................................ 21 1 1 1.00 1 1
................................................................................ACTGGAGGGTGTAGTGTTTCCTACTTTATGGAAA.................................................. 34 2 1 1.00 1 1
...................................................CCCATAAAGTAGTAAGCACT............................................................................................. 20 1 1 1.00 1 1
.........................................................................................TGTAGTGTTTCCTACTTTATGTA.................................................... 23 1 1 1.00 1 1
.....................................................CATAAAGTAGAAAGCACTAG........................................................................................... 20 1 4 0.75 3 3
...........................................................................................TAGTGTTTCCTACTTTATGGAAA.................................................. 23 2 2 0.50 1 1
...................................................CCCATACAGTAGAAAGCACT............................................................................................. 20 1 2 0.50 1 1
............................................................................................AGTGTTTCCTAATTTATGGATT.................................................. 22 2 2 0.50 1 1
.....................................................CATAAAGTAGAAAGCACTAT........................................................................................... 20 1 2 0.50 1 1
...................................................CCCATAAAGGAGAAAGCACG............................................................................................. 20 2 8 0.50 4 4
.....................................................CATAAAGTAGAAAGCCCTACT.......................................................................................... 21 1 2 0.50 1 1
...................................................CCCATAAAGTAGAAAGCACGAA........................................................................................... 22 2 2 0.50 1 1
............................................................................................AGTGTTTCCTACTTTATGGAC................................................... 21 1 2 0.50 1 1
...................................................CCCATAAAGTAGAAAGCACTG............................................................................................ 21 1 2 0.50 1 1
...................................................CCCATAAAGTAGAAGGCACTAA........................................................................................... 22 2 2 0.50 1 1
.....................................................CATAAAGTAGAAAGCAC.............................................................................................. 17 0 2 0.50 1 1
.....................................................CATAAAGTAGTAAGCACTACT.......................................................................................... 21 1 2 0.50 1 1
...................................................CCCATAAAGTAGAAAGCAA.............................................................................................. 19 1 4 0.50 2 2
..........................................................................................GTAGTGTTTCCTACTTTATGGAAA.................................................. 24 2 2 0.50 1 1
.....................................................CATAAAGTAGAAAGGAGTACT.......................................................................................... 21 2 5 0.40 2 2
...................................................ACCATAAAGTAGAAAGCACT............................................................................................. 20 1 3 0.33 1 1
...................................................CCCATAAAGTGGAAAGCACTACA.......................................................................................... 23 2 3 0.33 1 1
...................................................CCCATAATGTAGAAAGCACT............................................................................................. 20 1 3 0.33 1 1
............................................................................................AGTGTTTCCTACTTTATGGACA.................................................. 22 2 3 0.33 1 1
.....................................................CATAAAGTAGAAAGGACTA............................................................................................ 19 1 4 0.25 1 1
.....................................................CATAAAGTAGAAGGCACTA............................................................................................ 19 1 4 0.25 1 1
...................................................CCCATAAAGTAGAAGGGACTACA.......................................................................................... 23 3 5 0.20 1 1
.....................................................CATAAAGTAGAGAGCACT............................................................................................. 18 1 5 0.20 1 1
.....................................................CATAAAGTAGAAAGCAGTA............................................................................................ 19 1 5 0.20 1 1
.....................................................CATAAAGTAGAAAGGAATACT.......................................................................................... 21 2 5 0.20 1 1
.....................................................CATAAAGTAGAACGCAATACT.......................................................................................... 21 2 6 0.17 1 1
.........................................................................................TGTAGTCTTGCCTACTTTAGGGA.................................................... 23 3 6 0.17 1 1
.....................................................CATAAAGTAGAAAGCACTAAA.......................................................................................... 21 2 20 0.15 3 3
......................................................ATAAAGTAGAAAGCACT............................................................................................. 17 0 20 0.15 3 3
...................................................CCCATAAAGTAGAAGGGACT............................................................................................. 20 2 16 0.13 2 2
...................................................CCCATAAAGGAGAAAGCACAA............................................................................................ 21 2 8 0.13 1 1
.....................................................CATAAAGTACAAAGCACTAGT.......................................................................................... 21 2 8 0.13 1 1
.....................................................CATAAAGTAAAAAGCACTAAT.......................................................................................... 21 2 18 0.11 2 2
............................................................................................AGTGTTTCCTACTTTATGGCA................................................... 21 2 9 0.11 1 1
.....................................................CATAAAGTAGAAAGCACTAAAAA........................................................................................ 23 2 20 0.10 2 2
.....................................................CATAAAGTAGAAAGCA............................................................................................... 16 0 10 0.10 1 1
...................................................CCCATACAGGAGAAAGCACT............................................................................................. 20 2 11 0.09 1 1
.....................................................CATAAAGTACAAAGCACTAAT.......................................................................................... 21 2 11 0.09 1 1
.....................................................CATAAAATAGAAAGCACTAGT.......................................................................................... 21 2 13 0.08 1 1
...................................................CCCATAAAGAAGAAAGCACG............................................................................................. 20 2 13 0.08 1 1
.....................................................CATAAATTAGAAAGCACTAAT.......................................................................................... 21 2 15 0.07 1 1
.....................................................CATAAAGTAGAAGGCACT............................................................................................. 18 1 16 0.06 1 1
.....................................................CATAAAGTAGAAAGC................................................................................................ 15 0 17 0.06 1 1
.....................................................CATAAAGTAGAAAGCAGT............................................................................................. 18 1 18 0.06 1 1
...................................................CCCATAAAGGAGAAAGCACGAA........................................................................................... 22 3 19 0.05 1 1
...................................................CCCATAAAGTAGAAAGG................................................................................................ 17 1 20 0.05 1 1
...................................................CCCATAAAGTAGAAAGCAAG............................................................................................. 20 2 20 0.05 1 1
...........................................................................................TAGTGTTTCTTACTTTATGGAAA.................................................. 23 3 20 0.05 1 1
.....................................................CATAAAGTAGAAAGCACTAAAA......................................................................................... 22 2 20 0.05 1 1
.....................................................CATAAAGTACAAAGCACTAG........................................................................................... 20 2 20 0.05 1 1
...................................................CCCATAAAGCAGAAAGCACA............................................................................................. 20 2 20 0.05 1 1

Anti-sense strand reads

TCGCCCGCCGGACTTCTCATGGGCGTCTGCCTGTCTGTCTGTCACGTCAGTGGGTATTTCATCTTTCGTGATGATTGTCGTGACCTCCCACATCACAAAGGATGAAATACCTACTCACATGACACCCGAAGCCTCTGGTGCGGCGGCGGCGGGCGGTGGCAGAA

*************************************.((((((((.(((.(((((((((((.(((((((.......(((((....)))))))))))).))))))))))).))).))))))))...************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:35 AM