ID:

eca-mir-139

 Coordinate:

chr7:71082259-71082321 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.6 -48.6 -48.6

Sense Strand Reads

GGAGGGCGACAGCCATGGGCGGCAGGAGATGCCAAGACTGGGCTCAGGTGTACTCTACAGTGCACGTGTCTCCAGTGTGGCTCCGAGGCTGGAGACGCGGCCCTGTTGGAGTAACAACTGAAGCCAGTGTCTGCgaagggcaggaggagggggaaagaaaggg

**************************************..(((((((.((((((((((((.((.((((((((((((.((....))..)))))))))))))).))).)))))).))).))).))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................TCTACAGTGCACGTGTCTCCAGT....................................................................................... 23 0 1 42.00 42 42
.....................................................TCTACAGTGCACGTGTCTCCA......................................................................................... 21 0 1 7.00 7 7
.....................................................TCTACAGTGCACGTGTCTCCAG........................................................................................ 22 0 1 6.00 6 6
.....................................................TCTACAGTGCACGTGTCTCCAGA....................................................................................... 23 1 1 5.00 5 5
.........................................................................................TGGAGACGCGGCCCTGTTGGAGT................................................... 23 0 1 5.00 5 5
.....................................................TCTACAGTGCACGTGTCTCCAGTT...................................................................................... 24 1 1 2.00 2 2
.....................................................TCTACAGTGCACGTGTCTCC.......................................................................................... 20 0 1 2.00 2 2
.....................................................TCTACAGTGCACGTGTCTCCAGTTT..................................................................................... 25 1 1 1.00 1 1
.....................................................TCTACAGTGCAGGTGTCTCCAGT....................................................................................... 23 1 1 1.00 1 1
.........................................................................................TGGAGACGCGGCCCTGTTGGAG.................................................... 22 0 1 1.00 1 1
.....................................................TCTACAGTGCACGTGTGTCCAGT....................................................................................... 23 1 1 1.00 1 1
.....................................................TCTACAGTGCACGTGTCTCCATT....................................................................................... 23 1 1 1.00 1 1
.....................................................TCTACAGTGCACGTGTCTC........................................................................................... 19 0 1 1.00 1 1
.....................................................TCTACAGTGCACGTGTCTCCAGATT..................................................................................... 25 2 1 1.00 1 1
.........................................................................................TGGAGACGCGGCCCTGT......................................................... 17 0 1 1.00 1 1
.....................................................TATACAGTGCACGTGTCTCCAGT....................................................................................... 23 1 1 1.00 1 1

Anti-sense strand reads

CCTCCCGCTGTCGGTACCCGCCGTCCTCTACGGTTCTGACCCGAGTCCACATGAGATGTCACGTGCACAGAGGTCACACCGAGGCTCCGACCTCTGCGCCGGGACAACCTCATTGTTGACTTCGGTCACAGACGgTTgggGTggTggTgggggTTTgTTTggg

************************************..(((((((.((((((((((((.((.((((((((((((.((....))..)))))))))))))).))).)))))).))).))).))))..************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:07 PM