ID:

eca-mir-138-1

Coordinate:

chr3:9201079-9201162 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-42.1	-41.9	-41.8

mature

star

Sense Strand Reads

CAAAGCTGCGGAGCCTCGTCCAGAAGAGGAAGCCGGCAGAGTTCTGGTATCGTTGCTGCAGCTGGTGTTGTGAATCAGGCCGACGAGCAGTGCATCCTCTTACCCGGCTATTTCACGACACCAGGGTTGCATCATACCCATCCTCTCCAGGCGAGCCTCGAGGGACCAGGGCGGACGTGGACGT *********************************..((((....(((((...(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).)))..)))))....))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR871532 testes
...........................................................AGCTGGTGTTGTGAATCAGGCCGAGA...................................................................................................	26	2	1	7.00	7	7
...........................................................AGCTGGTGTTGTGAATCAGGCCG......................................................................................................	23	0	2	6.00	12	12
...........................................................AGCTGGTGTTGTGAATCAGGCCGAAA...................................................................................................	26	2	1	3.00	3	3
...........................................................AGCTGGTGTTGTGAATCAGGCCGAA....................................................................................................	25	1	1	3.00	3	3
...........................................................AGCTGGTGTTGTGAATCAGGC........................................................................................................	21	0	2	1.00	2	2
...........................................................AGCTGGTGTTGTGAATCAGCCCGAA....................................................................................................	25	2	1	1.00	1	1
...........................................................AGCTGGTGTTGTGAATCAGGCCGAAGAC.................................................................................................	28	2	1	1.00	1	1
...........................................................AGCTGGTGTTGTGAATCAGGCCGAGAA..................................................................................................	27	2	1	1.00	1	1
...........................................................CGCTGGTGTTGTGAATCAGGCCG......................................................................................................	23	1	2	0.50	1	1
...........................................................CGCTGGTGTTGTGGATCAGGCCG......................................................................................................	23	2	2	0.50	1	1
...........................................................AGCTGGTGTTGTGAATCAGGCCGTAGA..................................................................................................	27	2	2	0.50	1	1
...........................................................AGCTGGTGTTGTGAATCAGGCCGGAT...................................................................................................	26	3	2	0.50	1	1
...........................................................AGCTGGTGTTGGGAATCAGGCCG......................................................................................................	23	1	2	0.50	1	1

Anti-sense strand reads

GTTTCGACGCCTCGGAGCAGGTCTTCTCCTTCGGCCGTCTCAAGACCATAGCAACGACGTCGACCACAACACTTAGTCCGGCTGCTCGTCACGTAGGAGAATGGGCCGATAAAGTGCTGTGGTCCCAACGTAGTATGGGTAGGAGAGGTCCGCTCGGAGCTCCCTGGTCCCGCCTGCACCTGCA *********************************..((((....(((((...(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).)))..)))))....))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR871532 testes
.......CGCCGCGGAGCAGGTC.................................................................................................................................................................	16	1	20	0.05	1	1

Generated: 09/01/2015 at 12:00 PM