ID:

eca-mir-135b

 Coordinate:

chr5:1903337-1903425 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.6 -47.2 -47.0

Sense Strand Reads

ACCCCCAGCTCCCTGTGTCCTTTTGAGATTCCCGCCGCTGGACCCCCTCAGCTCTGCTGTGGCCTATGGCTTTTCATTCCTATGTGATTGCTGTTCTAAACTCATGTAGGGCTAAAAGCCATGGGCTACAGTGAGGGGCGTGCTCCTTCTCCTGCAGCACCTGCACCTCCCCACAGGACCAGACTGGGA

*************************************************.((((((((((((((((((((((((...((((((((((..............))))))))))..)))))))))))))))))))..))))).************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................TATGGCTTTTCATTCCTATGTGA...................................................................................................... 23 0 1 79.00 79 79
................................................................TATGGCTTTTCATTCCTATGTGAA..................................................................................................... 24 1 1 57.00 57 57
................................................................TATGGCTTTTCATTCCTATGTG....................................................................................................... 22 0 1 27.00 27 27
................................................................TATGGCTTTTCATTCCTATGT........................................................................................................ 21 0 1 13.00 13 13
................................................................TATGGCTTTTCATTCCTATGTGG...................................................................................................... 23 1 1 7.00 7 7
................................................................TATGGCTTTTCATTCCTATGTGT...................................................................................................... 23 1 1 7.00 7 7
................................................................TATGGCTTTTCATTCCTATGTGAT..................................................................................................... 24 0 1 6.00 6 6
................................................................TATGGCTTTTCATTCCTATGTGAC..................................................................................................... 24 1 1 5.00 5 5
................................................................TATGGCTTTTCATTCCTATG......................................................................................................... 20 0 1 5.00 5 5
................................................................TATGGCTTTTCATTCCTA........................................................................................................... 18 0 1 3.00 3 3
................................................................TATGGCTTTTCATTCCTATGTGAG..................................................................................................... 24 1 1 3.00 3 3
.......................................................................................................ATGTAGGGCTAAAAGCCATGGGT............................................................... 23 1 1 3.00 3 3
................................................................TATGGTTTTTCATTCCTATGTGA...................................................................................................... 23 1 1 2.00 2 2
................................................................TATGGCTTTTCATTCCTATGTCAA..................................................................................................... 24 2 1 1.00 1 1
........................................................................................................TGTAGGGCTAAAAGCCATGGGAA.............................................................. 23 2 1 1.00 1 1
................................................................TATGGCTTTTCATTCCTATATG....................................................................................................... 22 1 1 1.00 1 1
.......................................................................................................ATGTAGGGCTAAAAGCCATGGG................................................................ 22 0 1 1.00 1 1
................................................................GATGGCTTTTCATTCCTATGTGAA..................................................................................................... 24 2 1 1.00 1 1
................................................................TATGGCTTTTCATTCCTATGTGATTGTT................................................................................................. 28 1 1 1.00 1 1
................................................................TATGGCTTTGCATTCCTATGTGT...................................................................................................... 23 2 1 1.00 1 1
................................................................TATGGCTTTTCATTCCTATGTC....................................................................................................... 22 1 1 1.00 1 1
................................................................TATGGCTTTTCATTCCAATGTGA...................................................................................................... 23 1 1 1.00 1 1
................................................................TATGGGTTTTCATTCCTATGTGA...................................................................................................... 23 1 1 1.00 1 1
.......................................................................................................ATGTAGGGCTAAAAGCCATGGGTAA............................................................. 25 2 1 1.00 1 1
................................................................TATGGCTTTTCAGTCCTATGTGAA..................................................................................................... 24 2 1 1.00 1 1
................................................................TATGGCTTTTCATTCTTATGTG....................................................................................................... 22 1 1 1.00 1 1
........................................................................................................TGTAGGGCTAAAAGCCATGGGT............................................................... 22 1 1 1.00 1 1
................................................................TATGGCTTTTCATTACTATGTGAT..................................................................................................... 24 1 1 1.00 1 1
.......................................................................................................ATGTAGGGCTAAAAGCCATGGGAT.............................................................. 24 1 1 1.00 1 1
.......................................................................................................ATGTAGGGCTAAAAGCCATGGGA............................................................... 23 1 1 1.00 1 1
................................................................TATGGCGTTGCATTCCTATGTG....................................................................................................... 22 2 1 1.00 1 1
........................................................................................................TGTAGGGCTAAAAGCCATGGGACT............................................................. 24 3 1 1.00 1 1
................................................................TATGGCTTTTCATTCCTATGTAA...................................................................................................... 23 1 1 1.00 1 1
................................................................TATGGCTTTTCATTCCTATGTGATTGC.................................................................................................. 27 0 1 1.00 1 1
................................................................TATGGCTTTTCATTCTTATGTGTT..................................................................................................... 24 2 1 1.00 1 1
.......................................................................................................ATGTAGGGCTAAAAGCCATGGGAAT............................................................. 25 3 3 0.67 2 2
................................................................TATGGCTTTTCATTCCTATGTGAAA.................................................................................................... 25 2 2 0.50 1 1
................................................................TATGGCTTTTCATTCCAATGTGAA..................................................................................................... 24 2 2 0.50 1 1
................................................................TATGGCTTTTCATTCCTATGTAGA..................................................................................................... 24 3 2 0.50 1 1
................................................................TATGGCTTTGCATTCCTATATGAC..................................................................................................... 24 3 2 0.50 1 1
.......................................................................................TTGCTGTTCTAAACTC...................................................................................... 16 0 5 0.20 1 1
................................................................TATGGCTTTTCATTCCTATGAAG...................................................................................................... 23 3 12 0.17 2 2

Anti-sense strand reads

TGGGGGTCGAGGGACACAGGAAAACTCTAAGGGCGGCGACCTGGGGGAGTCGAGACGACACCGGATACCGAAAAGTAAGGATACACTAACGACAAGATTTGAGTACATCCCGATTTTCGGTACCCGATGTCACTCCCCGCACGAGGAAGAGGACGTCGTGGACGTGGAGGGGTGTCCTGGTCTGACCCT

*************************************************.((((((((((((((((((((((((...((((((((((..............))))))))))..)))))))))))))))))))..))))).************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:02 PM