ID:

eca-mir-135a-2

 Coordinate:

chr28:22270398-22270497 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.2 -33.2 -33.2
mature

  1. eca-mir-135a  chr16:35417147-35417169 +
  2. eca-mir-135a-2  chr28:22270420-22270442 +
star

Sense Strand Reads

TTGAAATGGTTGTGAAGTCATGTGAAGAAAATAAGTTTTTCATCCGACCAAGATAAATTCACTCTAGTGCTTTATGGCTTTTTATTCCTATGTGATAGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAAAAATCATCAACTAAGAAGGGGCCATCAGTATAGAAAACATTAGCCTGTGGAGCTGT

*********************************************************(((((....(((.((((((((((((.((((((((((((.............)))))))))))))))))))))))).)))...)))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................................TATGGCTTTTTATTCCTATGTGA......................................................................................................... 23 0 2 11.50 23 23
........................................................................TATGGCTTTTTATTCCTATGT........................................................................................................... 21 0 2 4.00 8 8
...............................................................................................................TGTAGGGATGGAAGCCATGAAA................................................................... 22 0 1 4.00 4 4
........................................................................TATGGCTTTTTATTCCTATGTG.......................................................................................................... 22 0 2 3.00 6 6
..............................................................................................................ATGTAGGGATGGAAGCCATGAA.................................................................... 22 0 1 1.00 1 1
........................................................................TATGGCTTTTTAGTCCTATGTGA......................................................................................................... 23 1 2 1.00 2 2
........................................................................................................................................................................TCAGTATAGAAAACATTAGCCTGTGGAGC... 29 0 1 1.00 1 1
........................................................................TATGGCTTTTTATTCCTATGTGG......................................................................................................... 23 1 2 1.00 2 2
...............................................................................................................TGTAGGGATGGAAGCCATGAAAGA................................................................. 24 1 1 1.00 1 1
........................................................................TATGGCTTTTTATTCCTATGTGAT........................................................................................................ 24 0 2 1.00 2 2
........................................................................TATGGCTTTTTATTCCTATGTGAC........................................................................................................ 24 1 2 0.50 1 1
........................................................................TATGGCTTTTTATTCCTATG............................................................................................................ 20 0 2 0.50 1 1
........................................................................TATGGCTTTTCATTCCTATGTGAAA....................................................................................................... 25 2 2 0.50 1 1
........................................................................TATGGCGTTCTATTCCTATGTGA......................................................................................................... 23 2 2 0.50 1 1
........................................................................TATGGCTTTTTATTCCTATGTTA......................................................................................................... 23 1 2 0.50 1 1
...............................................................................................................TGTAGGGATGGAAGCCATGAAT................................................................... 22 1 2 0.50 1 1
........................................................................TATGGCTTTTTATTCC................................................................................................................ 16 0 5 0.20 1 1

Anti-sense strand reads

AACTTTACCAACACTTCAGTACACTTCTTTTATTCAAAAAGTAGGCTGGTTCTATTTAAGTGAGATCACGAAATACCGAAAAATAAGGATACACTATCATTATTTCAGAGTACATCCCTACCTTCGGTACTTTATGTAACACTTTTTAGTAGTTGATTCTTCCCCGGTAGTCATATCTTTTGTAATCGGACACCTCGACA

****************************************************(((((....(((.((((((((((((.((((((((((((.............)))))))))))))))))))))))).)))...)))))....********************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:59 AM