ID:

eca-mir-133b

 Coordinate:

chr20:49824706-49824766 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.2 -42.8 -42.7
mature

  1. eca-mir-133a  chr8:39915645-39915665 +
  2. eca-mir-133b  chr20:49824745-49824765 +
  3. eca-mir-133a-2  chr22:48444308-48444328 +
star

Sense Strand Reads

CTCTTCACACTAGAGGCTGCAGTCACCTCCCAAGGAGCTGCCTCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCAATGCCCAGTCCTTGGAGAAACAGAAGCAACTCACGT

***********************************...(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................TTTGGTCCCCTTCAACCAGCT................................................... 21 0 3 4.33 13 13
.........................................................................................TTTGGTCCCCTTCAACCAGC.................................................... 20 0 3 1.00 3 3
..........................................................................................TTGGTCCCCTTCAACCAGCTGC................................................. 22 1 3 0.67 2 2
..........................................................................................TTGGTCCCCTTCAACCAGCT................................................... 20 0 3 0.67 2 2
.........................................................................................TTTGGTCCCCTTCAACCAGCTT.................................................. 22 1 3 0.67 2 2
..........................................................................................TTGGTCCCCTTCAACCAGC.................................................... 19 0 3 0.67 2 2
.........................................................................................TTTGGTCCCCTTCAACCAGCTAT................................................. 23 1 3 0.33 1 1
..........................................................................................TTGGTCCCCTTCAACCAGCGT.................................................. 21 2 3 0.33 1 1
..........................................................................................TTGGTCCCCTTCAACC....................................................... 16 0 3 0.33 1 1
.........................................................................................TTTGGACCCCTTCAACCAGC.................................................... 20 1 3 0.33 1 1
.........................................................................................TTTGGTCCCCTGCAACCAGCTGCA................................................ 24 2 4 0.25 1 1
..........................................................................................TTGGTCCCCTTGAACCAGCTGC................................................. 22 2 5 0.20 1 1

Anti-sense strand reads

GAGAAGTGTGATCTCCGACGTCAGTGGAGGGTTCCTCGACGGAGGACGAGACCGACCAGTTTGCCTTGGTTCAGGCAGAAGGACTCTCCAAACCAGGGGAAGTTGGTCGATGTCGTCCCGACCGTTACGGGTCAGGAACCTCTTTGTCTTCGTTGAGTGCA

***********************************...(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:50 AM