ID:

eca-mir-133a-2

 Coordinate:

chr22:48444266-48444333 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.9 -33.9 -33.6
mature

  1. eca-mir-133a  chr8:39915645-39915667 +
  2. eca-mir-133a-2  chr22:48444308-48444330 +
star

  1. eca-mir-133a  chr8:39915608-39915629 +
  2. eca-mir-133a-2  chr22:48444271-48444292 +

Sense Strand Reads

CTTCGTCATGGACGTCGCTGTTTCCCGAGGATCCGGGAGCCAAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCGCACCGTCGGCCCGGCTGGAGGACACGGTTGGTCCAGG

****************************************..(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))....************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................................................TTTGGTCCCCTTCAACCAGCTGT..................................................... 23 0 2 350.00 700 700
.............................................................................................TTGGTCCCCTTCAACCAGCTGT..................................................... 22 0 2 263.50 527 527
............................................................................................TTTGGTCCCCTTCAACCAGCTG...................................................... 22 0 2 36.00 72 72
.............................................................................................TTGGTCCCCTTCAACCAGCTGTT.................................................... 23 1 2 21.00 42 42
.............................................................................................TTGGTCCCCTTCAACCAGCTGTA.................................................... 23 0 2 13.50 27 27
............................................................................................TTTGGTCCCCTTCAACCAGCTGTT.................................................... 24 1 2 11.00 22 22
.............................................................................................TTGGTCCCCTTCAACCAGCTG...................................................... 21 0 2 10.50 21 21
.............................................................................................TTGGTCCCCTTCAACCAGCTGTTT................................................... 24 2 2 9.50 19 19
............................................................................................TTTGGTCCCCTTCAACCAGCTGTA.................................................... 24 0 2 5.00 10 10
............................................................................................TTTGGTCCCCTTCAACCAGCT....................................................... 21 0 3 4.33 13 13
............................................................................................TTTGGTCCCCTTCAACCAGGTGT..................................................... 23 1 2 3.00 6 6
.............................................................................................TTGGTCCCCTTGAACCAGCTGT..................................................... 22 1 2 3.00 6 6
............................................................................................TTTGGTCCCCTTCAACCAGCTTT..................................................... 23 1 2 3.00 6 6
..............................................................................................TGGTCCCCTTCAACCAGCTGT..................................................... 21 0 2 2.50 5 5
...................................................................................................................AGCTGTGCATTGATCGCACCGTCGGCC.......................... 27 0 1 2.00 2 2
.............................................................................................TTGGTCCCCTTCAACCAGCTGTAA................................................... 24 1 2 2.00 4 4
............................................................................................TTTGGTCCCCTTAAACCAGCTGT..................................................... 23 1 2 2.00 4 4
.......................................................AGCTGGTAAAATGGAACCAAAT........................................................................................... 22 0 2 1.50 3 3
.............................................................................................TTGGTCCCCTTCAACCAGCTGTTA................................................... 24 2 2 1.50 3 3
.............................................................................................TTGGTCCCCTTCAACCAGCTGTAT................................................... 24 1 2 1.50 3 3
.............................................................................................TTGGTCCCCTTCAATCAGCTGT..................................................... 22 1 2 1.50 3 3
............................................................................................TTTGGTCCCCTTGAACCAGCTGT..................................................... 23 1 2 1.50 3 3
............................................................................................TTTGGTCCCCTTCAACCAGATGT..................................................... 23 1 2 1.50 3 3
.............................................................................................TTGGTCCCCTTCAACCAGCTGG..................................................... 22 1 2 1.50 3 3
..............................................................................................TGGTCCCCTTCAACCAGCTGTT.................................................... 22 1 2 1.50 3 3
............................................................................................TTTGGTCCCCTTCAACCAGCTGA..................................................... 23 1 2 1.50 3 3
.............................................................................................TTGGTCACCTTCAACCAGCTGT..................................................... 22 1 2 1.50 3 3
............................................................................................TTTGGTCCCCTTCAACGAGCTGT..................................................... 23 1 2 1.50 3 3
............................................................................................TTTGGTCCCCTTCAACCAGC........................................................ 20 0 3 1.00 3 3
..............................................................................................TGGTCCCCTTCAACCAGCTGTA.................................................... 22 0 2 1.00 2 2
..............................................................................................TGGTCCCCTTCAACCAGCTGTAA................................................... 23 1 2 1.00 2 2
............................................................................................TTTGGTCCCCTTCAACCAGCTGTTT................................................... 25 2 2 1.00 2 2
.............................................................................................TTGGTCCCCTTCAACCAGCTGTTTT.................................................. 25 3 2 1.00 2 2
............................................................................................TTTGGTCCCCTGCAACCAGCTGT..................................................... 23 1 2 1.00 2 2
.............................................................................................TTGGTCCCCTTCAACCAGCGGT..................................................... 22 1 2 1.00 2 2
.............................................................................................TTGGTCCCCTTCAACCGGCTGT..................................................... 22 1 2 1.00 2 2
............................................................................................TTTGGTCCCCTTCAACCAGCTGTAA................................................... 25 1 2 1.00 2 2
............................................................................................TTTGGTCCCCTTTAACCAGCTGT..................................................... 23 1 2 1.00 2 2
............................................................................................TTTGGTCCCCTTCAACCAGCTT...................................................... 22 1 3 0.67 2 2
.............................................................................................TTGGTCCCCTTCAACCAGCTGC..................................................... 22 1 3 0.67 2 2
.............................................................................................TTGGTCCCCTTCAACCAGCT....................................................... 20 0 3 0.67 2 2
.............................................................................................TTGGTCCCCTTCAACCAGC........................................................ 19 0 3 0.67 2 2
............................................................................................TTTGGTCCCCTTCAGCCAGCTG...................................................... 22 1 2 0.50 1 1
............................................................................................TTTGGTCCCCTACAACCAGCTGT..................................................... 23 1 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAGCCAGCTGT..................................................... 23 1 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACCAGCTGTAG................................................... 24 0 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACCAGCTGTAGA.................................................. 25 1 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCAGCGG...................................................... 22 1 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAATCAGCTG...................................................... 21 1 2 0.50 1 1
............................................................................................TTTGGTACCGTTCAACCAGCTGT..................................................... 23 2 2 0.50 1 1
.............................................................................................TTTGTCCCCTTCAACCAGCTGT..................................................... 22 1 2 0.50 1 1
.............................................................................................TTGGTCACCTTCAACCAGCTGTAT................................................... 24 2 2 0.50 1 1
..............................................................................................TGGTCCCCTTCAACCAGCTGTTA................................................... 23 2 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACTAGCTGT..................................................... 23 1 2 0.50 1 1
.............................................................................................ATGGTCCCCTTCAACCAGCTGT..................................................... 22 1 2 0.50 1 1
..............................................................................................TGGTCCCCTTCAACCAGCTGG..................................................... 21 1 2 0.50 1 1
............................................................................................TTTGGTCCCCTCCAACCAGCTGT..................................................... 23 1 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACCAGCTGTTG................................................... 24 1 2 0.50 1 1
............................................................................................TTTGGTCCCGTTCAACCAGGTGT..................................................... 23 2 2 0.50 1 1
.......................................................AGCTGGTAAAATGGAACCAAA............................................................................................ 21 0 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCAGTTGT..................................................... 23 1 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCAGCTCT..................................................... 23 1 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACGAGCTG...................................................... 22 1 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAAGCAGCTGTAT................................................... 24 2 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACTAGCTGA..................................................... 22 2 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAAGCGGCTGT..................................................... 22 2 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCAGCTGTAAT.................................................. 26 2 2 0.50 1 1
............................................................................................TTTGGTACCGTTCAACCAGCTG...................................................... 22 2 2 0.50 1 1
............................................................................................TTTGGTCCCGTTCAACCAGCTGT..................................................... 23 1 2 0.50 1 1
............................................................................................TTTGGTACCCTTCAACCAGCTGT..................................................... 23 1 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACCAGCCGT..................................................... 22 1 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACCAGCTGTTAT.................................................. 25 3 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCAGATG...................................................... 22 1 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAGCGAGCTGT..................................................... 23 2 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCGGCTGT..................................................... 23 1 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCAGTTG...................................................... 22 1 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACCAGCTGTTTA.................................................. 25 3 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACTAGCTGT..................................................... 22 1 2 0.50 1 1
..............................................................................................TGGTCCCCTTCAACCAGCTGTTT................................................... 23 2 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCAGCTGG..................................................... 23 1 2 0.50 1 1
............................................................................................TTTGGTCCCTTTCAACCAGGTGT..................................................... 23 2 2 0.50 1 1
............................................................................................TTTGGACCCCTTCAACCAGCTGT..................................................... 23 1 2 0.50 1 1
.............................................................................................TTGGTCCCCTTCAACCAGCTGAAT................................................... 24 2 2 0.50 1 1
............................................................................................TTTGGTCCCCTTCAACCAGCTAT..................................................... 23 1 3 0.33 1 1
..............................................................................................TGGTCCCCTTCAACCAGCTGTTAT.................................................. 24 3 3 0.33 1 1
.............................................................................................TTGGTCCCCCTCAACCAGCCGT..................................................... 22 2 3 0.33 1 1
............................................................................................TTTGGTGCCGTTCAACCAGGTGT..................................................... 23 3 3 0.33 1 1
.............................................................................................TTGGTCCCCTTCAACCAGCGT...................................................... 21 2 3 0.33 1 1
.............................................................................................TTGGTCCCCATCAACCAGCAGT..................................................... 22 2 3 0.33 1 1
............................................................................................TTTGGACCCCTTCAACCAGC........................................................ 20 1 3 0.33 1 1
.............................................................................................TTGGTCCCCTTCAACC........................................................... 16 0 3 0.33 1 1
............................................................................................TTTGGTACCGTTCAACCAGGTGT..................................................... 23 3 4 0.25 1 1
.............................................................................................TTGGTCCCCTTCGAACAGCTGT..................................................... 22 2 4 0.25 1 1
............................................................................................TTTGGTCCCCTGCAACCAGCTGCA.................................................... 24 2 4 0.25 1 1
.............................................................................................TTGGTCCTCTTCAAGCAGCTGT..................................................... 22 2 4 0.25 1 1
.............................................................................................TTGGTCCCCTTGAACCAGCTGC..................................................... 22 2 5 0.20 1 1
............................................................................................TTTGGTACCATTCAACCAGATGT..................................................... 23 3 7 0.14 1 1
............................................................................................TTTGGTGCCTTTCAACCAGGTG...................................................... 22 3 15 0.07 1 1

Anti-sense strand reads

GAAGCAGTACCTGCAGCGACAAAGGGCTCCTAGGCCCTCGGTTTACGAAACGATTTCGACCATTTTACCTTGGTTTAGTTGACAAGTTACCTAAACCAGGGGAAGTTGGTCGACATCGACACGTAACTAGCGTGGCAGCCGGGCCGACCTCCTGTGCCAACCAGGTCC

**************************************..(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:53 AM