ID:

eca-mir-1301

 Coordinate:

chr15:70650469-70650540 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.4 -50.4 -50.0

Sense Strand Reads

TTGGCACAGTGCCTCGTGGAACTCTGCCAAGTGACCCCTAGAATGGGGGCTGTGGGGGGTCACTCTAGGCACCGCAGCACTGTGCTGGGGATGTTGCAGCTGCCTGGGAGTGATTTCACACAGTCCTCTCTGCCTCAAGGGTCACCCGGAACAGGGAGGGTGGGAGAGGGAG

***********************************...((((..((((((((((.((((((((((((((((((.(((((...))))).))..........))))).))))))))))).)))))))))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................TTGCAGCTGCCTGGGAGTGATTTC....................................................... 24 0 1 8.00 8 8
.............................................................................................TTGCAGCTGCCTGGGAGTGAT.......................................................... 21 0 1 3.00 3 3
.............................................................................................TTGCAGCTGCCTGGGAGTGATTTAT...................................................... 25 2 1 3.00 3 3
..............................................................................................TGCAGCTGCCTGGGAGTGATTTC....................................................... 23 0 1 3.00 3 3
.............................................................................................TTGCAGCTGCCTGGGAGTGATTT........................................................ 23 0 1 3.00 3 3
.............................................................................................TTGCGGCTGCCTGGGAGTGATTTC....................................................... 24 1 1 2.00 2 2
.............................................................................................TTGCAGCTGCCTGGGAGTGATTTCT...................................................... 25 1 1 1.00 1 1
.............................................................................................TTGCAGCTGCCTGGGAGTGATTTAA...................................................... 25 1 1 1.00 1 1
..............................................................................................TGCAGCTGCCTGGGAGTGATTAAT...................................................... 24 3 1 1.00 1 1
.............................................................................................TTGCAGCTGCCTGGGAGTGATTTCAT..................................................... 26 1 1 1.00 1 1
.............................................................................................TTGCAGCTGCCTGGGAGTGATTAAAT..................................................... 26 3 1 1.00 1 1
.............................................................................................TTGCGGCTGCCTGGGAGTGATTTCATT.................................................... 27 3 1 1.00 1 1
.............................................................................................TTGCAGCTGCCTGGGAGTGATTTA....................................................... 24 1 1 1.00 1 1
.............................................................................................TTGCAGCTGCCTGGGAGTGATT......................................................... 22 0 1 1.00 1 1
................................................................................................CAGCTGCCTGGGAGTGATTTCAT..................................................... 23 1 1 1.00 1 1
.............................................................................................TTGCAGCTGCCTGGGAGTGAA.......................................................... 21 1 1 1.00 1 1
.............................................................................................TTGCAGCTGCCTGGGAGTGATTAT....................................................... 24 2 1 1.00 1 1
.............................................................................................TTGCGGCTGCCTGGGAGTGAT.......................................................... 21 1 1 1.00 1 1

Anti-sense strand reads

AACCGTGTCACGGAGCACCTTGAGACGGTTCACTGGGGATCTTACCCCCGACACCCCCCAGTGAGATCCGTGGCGTCGTGACACGACCCCTACAACGTCGACGGACCCTCACTAAAGTGTGTCAGGAGAGACGGAGTTCCCAGTGGGCCTTGTCCCTCCCACCCTCTCCCTC

***********************************...((((..((((((((((.((((((((((((((((((.(((((...))))).))..........))))).))))))))))).)))))))))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:42 AM