ID:

eca-mir-129b

 Coordinate:

chr12:8530962-8531035 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.3
mature

star

  1. eca-mir-129a  chr4:83387810-83387830 +
  2. eca-mir-129b  chr12:8530968-8530988 +

Sense Strand Reads

TGAAGGCGGCGGCTGCAGCGGACTGAAGAAGCCGACAGACTCTGCCCTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCGCTCGTCGAGAAGACGGCAGCCACGAGCGATCGCCGAAGCC

*****************************************.(((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))))...*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................AAGCCCTTACCCCAAAAAGCAT...................................................... 22 0 1 30.00 30 30
........................................................CTTTTTGCGGTCTGGGCTTGC................................................................................................. 21 0 2 16.50 33 33
........................................................CTTTTTGCGGTCTGGGCTTGCAAGA............................................................................................. 25 3 1 8.00 8 8
..................................................................................................AAGCCCTTACCCCAAAAAGCA....................................................... 21 0 1 6.00 6 6
........................................................CTTTTTGCGGTCTGGGCTTGCAAT.............................................................................................. 24 2 2 5.50 11 11
........................................................CTTTTTGCGGTCTGGGCTTGCAAA.............................................................................................. 24 3 4 5.00 20 20
..................................................................................................AAGCCCTTACCCCAAAAAGC........................................................ 20 0 1 4.00 4 4
........................................................CTTTTTGCGGTCTGGGCTTGCAA............................................................................................... 23 2 2 3.50 7 7
........................................................CTTTTTGCGGTCTGGGCTTGCA................................................................................................ 22 1 2 2.00 4 4
........................................................CTTTTTGCGGTCTGGGCTTGCGAAA............................................................................................. 25 3 1 2.00 2 2
..................................................................................................CAGCCCTTACCCCAAAAAGCAT...................................................... 22 1 1 2.00 2 2
........................................................CTTTTTGCGGTCTGGGCTTGCT................................................................................................ 22 0 2 1.50 3 3
........................................................CTTTTTGCGGTCTGGGCTTGAA................................................................................................ 22 2 2 1.00 2 2
..................................................................................................AAGCCCTTACCCCAGAAAGCAT...................................................... 22 1 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCAGAA............................................................................................. 25 2 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGGTTGCAATA............................................................................................. 25 3 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCAATA............................................................................................. 25 2 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCTAGA............................................................................................. 25 2 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGCTTGA................................................................................................. 21 1 2 1.00 2 2
..................................................................................................AAGCCCTTACCCCAAAAAGCATA..................................................... 23 1 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCTAAA............................................................................................. 25 2 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCAATAT............................................................................................ 26 3 1 1.00 1 1
..................................................................................................AAGCCCTTACCCCAAAGAGCAT...................................................... 22 1 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGCTTGAAA............................................................................................... 23 3 6 1.00 6 6
..................................................................................................AAGCCCTTACCCCAAAAAGCAA...................................................... 22 1 1 1.00 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCGAA.............................................................................................. 24 3 3 0.67 2 2
........................................................CTTTTTGCGGTCTGGGCTTGT................................................................................................. 21 1 3 0.67 2 2
........................................................CTTTTTGCGGTCTGGGCTTGCTT............................................................................................... 23 1 2 0.50 1 1
........................................................CTTTTTGCGGTCTGGGCTTGAAG............................................................................................... 23 2 2 0.50 1 1
........................................................CTTTTTGCGGTCTGGGCTTGATT............................................................................................... 23 2 2 0.50 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCAGA.............................................................................................. 24 2 2 0.50 1 1
........................................................CGTTTTGCGGTCTGGGCTTGC................................................................................................. 21 1 2 0.50 1 1
..................................................................................................AAGCCCTTACCCCAAAAAGAAT...................................................... 22 1 2 0.50 1 1
........................................................CTTTTTGCGGTCTGGGCTTGTTA............................................................................................... 23 2 2 0.50 1 1
........................................................CTTTTTGCGGTCTGGGCT.................................................................................................... 18 0 2 0.50 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCAG............................................................................................... 23 1 2 0.50 1 1
........................................................CTTTTTGCGGTCTGGGCTTGTA................................................................................................ 22 2 3 0.33 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCAT............................................................................................... 23 2 3 0.33 1 1
..................................................................................................AAGCCCGTAGCCCAAAAAGAATT..................................................... 23 3 3 0.33 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCGA............................................................................................... 23 2 3 0.33 1 1
........................................................CTTTTTGCGGTCTGGGCTTGCATA.............................................................................................. 24 3 3 0.33 1 1
........................................................CTTTTTGCGGTCTGGGCTTGAAT............................................................................................... 23 3 4 0.25 1 1

Anti-sense strand reads

ACTTCCGCCGCCGACGTCGCCTGACTTCTTCGGCTGTCTGAGACGGGAAGCGCTTAGAAAAACGCCAGACCCGAACGACATGTATTGAGTTATCGGCCTTCGGGAATGGGGTTTTTCGTAAGCGCCTCCCGCGCGAGCAGCTCTTCTGCCGTCGGTGCTCGCTAGCGGCTTCGG

***************************************.(((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:37 AM