ID:

eca-mir-1298

 Coordinate:

chrX:90781532-90781642 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TTTCCTTTTATATAGGTGATTGTGAAGCTGTGAAATGAAGAGCTATTGGAAAGATGAGGAGTTAAGAGTTCATTCGGCTGTCCAGATGTATCCAAGTACCCAGTTATTTGGCAATAAATACATCTGGGCAACTGATTGAACTTTTCGCTTTTCATGACTCAACTGGAACCTTCCACAGCCAGAAGGACCTGCTATATAGTCAAAAGTTTGT

*****************************************************(((((((((.(((((((((.((((.((((((((((((((((((((......)))))))......))))))))))))).)))).))))))))).)))))))))..****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................TTCATTCGGCTGTCCAGATGTA......................................................................................................................... 22 0 1 251.00 251 251
....................................................................TTCATTCGGCTGTCCAGATGT.......................................................................................................................... 21 0 1 18.00 18 18
........................................................................................................................CATCTGGGCAACTGATTGAACT..................................................................... 22 0 1 9.00 9 9
....................................................................TTCATTCGGCTGTCCAGATGTAT........................................................................................................................ 23 0 1 9.00 9 9
....................................................................TTCATTCGGCTGTCCAGATGTATC....................................................................................................................... 24 0 1 4.00 4 4
....................................................................TTCATTCGGCTGTCCAGATGTAA........................................................................................................................ 23 1 1 4.00 4 4
....................................................................TTCATTCGGCTGTCCAGATGAAA........................................................................................................................ 23 2 1 3.00 3 3
....................................................................TTCATTCGGCTGTCCAGATG........................................................................................................................... 20 0 1 3.00 3 3
....................................................................TTCATTCGGCTGTCCAGATGTAAT....................................................................................................................... 24 2 1 2.00 2 2
....................................................................TTCATTCGGCTGTCCAGATGTG......................................................................................................................... 22 1 1 2.00 2 2
....................................................................TTCATTCGGCTGTCCAGATATA......................................................................................................................... 22 1 1 2.00 2 2
....................................................................TTCATTAGGCTGTCCAGATGTA......................................................................................................................... 22 1 1 2.00 2 2
........................................................................................................................CATCTGGGCAACTGATTGAAC...................................................................... 21 0 1 2.00 2 2
....................................................................TTCATTCGTCTGTCCAGATGT.......................................................................................................................... 21 1 1 1.00 1 1
.........................................................................................................................ATCTGGGCAACTGATTGAACT..................................................................... 21 0 1 1.00 1 1
......................................................................................................................TACATCTGGGCAACTGATTGAAC...................................................................... 23 0 1 1.00 1 1
....................................................................ATCATTCGGCTGTCCAGATGTA......................................................................................................................... 22 1 1 1.00 1 1
....................................................................TTCATTCGGCTGTCCTGATGTA......................................................................................................................... 22 1 1 1.00 1 1
....................................................................TTCATTCGGCTGTCCAGATGTAG........................................................................................................................ 23 1 1 1.00 1 1
....................................................................TTCATTCGGCGGTCCAGATGT.......................................................................................................................... 21 1 1 1.00 1 1
....................................................................TTCATTCGGCTGACCAGATGTA......................................................................................................................... 22 1 1 1.00 1 1

Anti-sense strand reads

AAAGGAAAATATATCCACTAACACTTCGACACTTTACTTCTCGATAACCTTTCTACTCCTCAATTCTCAAGTAAGCCGACAGGTCTACATAGGTTCATGGGTCAATAAACCGTTATTTATGTAGACCCGTTGACTAACTTGAAAAGCGAAAAGTACTGAGTTGACCTTGGAAGGTGTCGGTCTTCCTGGACGATATATCAGTTTTCAAACA

******************************************************(((((((((.(((((((((.((((.((((((((((((((((((((......)))))))......))))))))))))).)))).))))))))).)))))))))..***************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:12 PM