ID:

eca-mir-1282

 Coordinate:

chr1:145282498-145282598 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

GCGAAGGGCAAGAGGGTTGGACACGAAGCCACAAAGCTACTTGGGTTCCTCCTTCTTCTCGTTTGCCTTTTTCTGCTTCTGCTGCATGATCTCCGAGTCCCTGGGGGTAGAGATGATGGGGCACTGGGAGGTACCAGAGGGCAAAAAGGACAAGATGCAGGGGGATGAAGGGCACAAGGATAAGATGGAAGTGGATGGGAC

***********************************...........(((((((((((((..((((((((((..((((((((((.(((.(((((.....(((...)))..))))).))).)))....)))))))..))))))))))..)))..)))...))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................................................TACCAGAGGGCAAAAAGGACAAGATGC........................................... 27 0 1 1.00 1 1

Anti-sense strand reads

CGCTTCCCGTTCTCCCAACCTGTGCTTCGGTGTTTCGATGAACCCAAGGAGGAAGAAGAGCAAACGGAAAAAGACGAAGACGACGTACTAGAGGCTCAGGGACCCCCATCTCTACTACCCCGTGACCCTCCATGGTCTCCCGTTTTTCCTGTTCTACGTCCCCCTACTTCCCGTGTTCCTATTCTACCTTCACCTACCCTG

***********************************...........(((((((((((((..((((((((((..((((((((((.(((.(((((.....(((...)))..))))).))).)))....)))))))..))))))))))..)))..)))...))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................CAAGGAGGAAGAAGAGCAAACGGAAAAAGAC.............................................................................................................................. 31 0 1 3.00 3 3
...........................................................................GAAGACGACGTACTAGAGGCTCAGGG.................................................................................................... 26 0 1 2.00 2 2
................................TTTCGATGAACCCAAGGAGGAAGAAGAGC............................................................................................................................................ 29 0 1 1.00 1 1
......................................................GAAGAGCAAACGGAAAAAGACGAAGACGA...................................................................................................................... 29 0 1 1.00 1 1
.......................................................TAGAGCAAACGGAAAAAGACGAAGACGACGT................................................................................................................... 31 1 1 1.00 1 1
.............................................................................AAACGACGTACTAGAGGCTCAGGGAGAC................................................................................................ 28 3 1 1.00 1 1
................................TTTCGATGAACCCAAGGAGGAAGAAGAGCAA.......................................................................................................................................... 31 0 1 1.00 1 1
......................................TGAACCCAAGGAGGAAGAAGAGCAA.......................................................................................................................................... 25 0 1 1.00 1 1
..................................................GGAAGAAGAGCAAACGGAAAAAGACGAAGAC........................................................................................................................ 31 0 1 1.00 1 1
........................TTTCGGTGTTTCGATGAACCCAAGGAGGAAGAT................................................................................................................................................ 33 2 1 1.00 1 1
.......................................................AAGAGCAAACGGAAAAAGACGAAGACGACGT................................................................................................................... 31 0 1 1.00 1 1
......................................................................TTGACGAAGACGACGTACTAGAGGCTCAGGGA................................................................................................... 32 2 1 1.00 1 1

Generated: 09/01/2015 at 11:32 AM