ID:

eca-mir-128-2

 Coordinate:

chr18:19492350-19492419 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.9
mature

  1. eca-mir-128-1  chr16:49087175-49087195 -
  2. eca-mir-128-2  chr18:19492393-19492413 +
star

Sense Strand Reads

TTTACCATATATGTTTAATATTTTGCAATAATTGGCCTTGTTCCTGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGGCTTCTTTTTACTCAGGTTTCCACTGCCTTTTTTTTTTTTT

*******************************************..((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................TCACAGTGAACCGGTCTCTTT........................................................ 21 0 2 311.50 623 623
.............................................................................................TCACAGTGAACCGGTCTCTTTT....................................................... 22 0 1 224.00 224 224
.............................................................................................TCACAGTGAACCGGTCTCTTTAT...................................................... 23 1 1 163.00 163 163
..........................................................CGGGGCCGTAGCACTGTCTGAGA......................................................................................... 23 0 1 133.00 133 133
.............................................................................................TCACAGTGAACCGGTCTCTTTA....................................................... 22 1 2 85.00 170 170
.............................................................................................TCACAGTGAACCGGTCTCTT......................................................... 20 0 2 74.50 149 149
.............................................................................................TCACAGTGAACCGGTCTCTTTAA...................................................... 23 2 2 67.00 134 134
..........................................................CGGGGCCGTAGCACTGTCTGA........................................................................................... 21 0 1 62.00 62 62
.............................................................................................TCACAGTGAACCGGTCTCT.......................................................... 19 0 2 29.50 59 59
.............................................................................................TCACAGTGAACCGGTCTCTTTTT...................................................... 23 0 1 28.00 28 28
.............................................................................................TCACAGTGAACCGGTCTCTTTTA...................................................... 23 1 1 23.00 23 23
.............................................................................................TCACAGTGAACCGGTCTCTTAT....................................................... 22 1 1 22.00 22 22
.............................................................................................TCACAGTGAACCGGTCTCTTTTAT..................................................... 24 2 1 19.00 19 19
.............................................................................................TCACAGTGAACCGGTCTCTTTAAA..................................................... 24 3 2 17.00 34 34
.............................................................................................TCACAGTGAACCGGTCTCTTTAG...................................................... 23 2 2 11.00 22 22
..........................................................CGGGGCCGTAGCACTGTCTGAGAA........................................................................................ 24 1 1 11.00 11 11
.............................................................................................TCACAGTGAACCGGTCTCTTTAAT..................................................... 24 3 4 10.25 41 41
.............................................................................................TCACAGTGAACCGGTCTCTTTTTT..................................................... 24 1 1 10.00 10 10
.............................................................................................TCACAGTGAACCGGTCTCTTTG....................................................... 22 1 2 9.00 18 18
.............................................................................................TCACAGTGAACCGGTCTCTTTTAA..................................................... 24 2 1 7.00 7 7
.............................................................................................TCACAGTGAACCGGTCTCTTTATT..................................................... 24 2 1 7.00 7 7
.............................................................................................TCACAGTGAACCGGTCTCTTA........................................................ 21 1 2 7.00 14 14
.............................................................................................TCACAGTGAACCGGTCTCTTTGA...................................................... 23 2 2 6.50 13 13
.............................................................................................TCACAGTGAACCGGTCTCTTTAGA..................................................... 24 3 2 6.50 13 13
..........................................................CGGGGCCGTAGCACTGTCTGAG.......................................................................................... 22 0 1 6.00 6 6
.............................................................................................TCACAGTGAACCGGTCTCTTTTG...................................................... 23 1 1 6.00 6 6
.............................................................................................TCACAGTGAACCGGTCTCTTAA....................................................... 22 2 4 5.75 23 23
.............................................................................................TCACAGTGAACCGGTCTCTTTAGT..................................................... 24 3 2 5.50 11 11
.............................................................................................TCACAGTGAACCGGTCTCTTTAAAA.................................................... 25 3 1 5.00 5 5
.............................................................................................TCACAGTGAACCGGTCTCTTAAT...................................................... 23 2 3 4.67 14 14
.............................................................................................TCACAGTGAACCGGTCTCTTTAGAA.................................................... 25 3 1 4.00 4 4
.............................................................................................TCACAGTGAACCGGTCTCA.......................................................... 19 1 2 3.00 6 6
.............................................................................................TCACAGTGAACCGGTCTCTTTAAGA.................................................... 25 3 1 3.00 3 3
.............................................................................................TCACAGTGAACCAGTCTCTTT........................................................ 21 1 2 2.50 5 5
.............................................................................................TCACAGTGAACCGGTCT............................................................ 17 0 2 2.50 5 5
.............................................................................................TCACAGTGAACCGGTCTCTTTAAG..................................................... 24 3 3 2.33 7 7
.............................................................................................TCACAGTGAACCGGTCTCTTAAA...................................................... 23 3 6 2.17 13 13
.............................................................................................TCACAGTGAACCGGTCTCTTTGT...................................................... 23 1 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTTTATA.................................................... 25 2 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTCTT....................................................... 22 1 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTATT...................................................... 23 1 1 2.00 2 2
..........................................................CGGGGCCGTAGCACTGTCTG............................................................................................ 20 0 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTGA....................................................... 22 2 2 2.00 4 4
.............................................................................................TCACAGTGAACCGGTCTCTTTATA..................................................... 24 2 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTGT....................................................... 22 1 1 2.00 2 2
..........................................................CGGGGCCGTAGCACTGTCTGAGT......................................................................................... 23 1 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGGCTCTTTAT...................................................... 23 2 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTTTTTT.................................................... 25 2 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTGTT....................................................... 22 1 1 2.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTAGA...................................................... 23 3 5 1.80 9 9
.............................................................................................TCACAGTGAACCGGTCTCTAAT....................................................... 22 2 3 1.67 5 5
.............................................................................................TCACAGTGAACGGGTCTCTTT........................................................ 21 1 2 1.50 3 3
.............................................................................................TCACAGTGAACCGGTCTCTTTGAA..................................................... 24 3 2 1.50 3 3
.............................................................................................TCACAGTGAACAGGTCTCTTT........................................................ 21 1 2 1.50 3 3
.............................................................................................TCACAGTGAACCGGTCTCTTG........................................................ 21 1 2 1.50 3 3
.............................................................................................TCACAGTGAATCGGTCTCTTT........................................................ 21 1 2 1.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTTTTAA.................................................... 25 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTTGT..................................................... 24 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTGT........................................................ 21 1 2 1.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTTTAG..................................................... 24 2 1 1.00 1 1
.............................................................................................TCACAGTGAGCCGGTCTCTATTTT..................................................... 24 3 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTAG........................................................ 21 2 2 1.00 2 2
..........................................................CGGGGCCGTAGCACTGTCTGAGAAT....................................................................................... 25 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTATG..................................................... 24 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTAGCA.................................................... 25 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTATAAA................................................... 26 3 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTATTT..................................................... 24 2 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTGAGAGT....................................................................................... 25 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCCCTTAT....................................................... 22 2 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTGAGAGGTTTAT.................................................................................. 30 1 1 1.00 1 1
..........................................................CGGGGACGTAGCACTGTCTGAGA......................................................................................... 23 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTTAAAGA.................................................. 27 3 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTATAAT................................................... 26 3 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTTC...................................................... 23 1 2 1.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTG......................................................... 20 1 2 1.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTCT....................................................... 22 1 1 1.00 1 1
.............................................................................................ACACAGTGAACCGGTCTCTT......................................................... 20 1 2 1.00 2 2
.............................................................................................TCACAGTGAACAGGTCTCTTTATA..................................................... 24 3 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTATTA.................................................... 25 2 1 1.00 1 1
.............................................................................................TCACAGTGAACGGGTCTCTTTAT...................................................... 23 2 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGGCTGAGA......................................................................................... 23 1 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTGAGAT........................................................................................ 24 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCCGTCTCTTTT....................................................... 22 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTCTTT...................................................... 23 1 1 1.00 1 1
.................................GGCCTTGTTCCTGAGCTGTTGGATT................................................................................................................ 25 0 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCCT......................................................... 20 1 2 1.00 2 2
..........................................................CGGGGCCGTAGCACTGTCTGAGAGGTT..................................................................................... 27 0 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCGTATT...................................................... 23 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTATAA..................................................... 24 3 1 1.00 1 1
.............................................................................................TCACAGGGAACCGGTCTCTATT....................................................... 22 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTAAG...................................................... 23 3 5 1.00 5 5
.............................................................................................TCACAGTGAACCGGTCTCTTTCT...................................................... 23 1 2 1.00 2 2
..........................................................CGGGGCCGTAGCACTGTCTGAGAGGTTT.................................................................................... 28 0 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTGAGAGAA...................................................................................... 26 2 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTGATA......................................................................................... 23 1 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGACTGAGA......................................................................................... 23 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTATTT.................................................... 25 3 2 1.00 2 2
..............................................................................................CACAGTGAACCGGTCTCTTTAT...................................................... 22 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTTAAAA................................................... 26 3 1 1.00 1 1
.............................................................................................TCACAGTGAGCCGGTCTCTTT........................................................ 21 1 2 1.00 2 2
.............................................................................................TCACAGTGAACCGGTCGCTTTT....................................................... 22 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGGCTCTTT........................................................ 21 1 2 1.00 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTTTTC..................................................... 24 0 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTTAGA......................................................................................... 23 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTAT........................................................ 21 1 2 1.00 2 2
..........................................................CGAGGCCGTAGCACTGTCTGAGA......................................................................................... 23 1 1 1.00 1 1
.............................................................................................TCACAGTGAACAGGTCTCTTTAT...................................................... 23 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTGAT...................................................... 23 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTTGA..................................................... 24 2 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTTAGAAT....................................................................................... 25 3 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTGATT......................................................................................... 23 2 1 1.00 1 1
.......................................GTTCCTGAGCTGTTGGATT................................................................................................................ 19 0 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCT............................................................................................. 19 0 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTGTAA..................................................... 24 3 1 1.00 1 1
..........................................................CGGGGCCGTAGCACTGTCTGAGATT....................................................................................... 25 2 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCACTTTT....................................................... 22 1 1 1.00 1 1
.............................................................................................TCACAGGGAACCGGTCTCTTTAT...................................................... 23 2 1 1.00 1 1
.............................................................................................ACACAGTGAACCGGTCTCTTTT....................................................... 22 1 1 1.00 1 1
.............................................................................................TCACAGTGAACCGGTCTCTA......................................................... 20 1 2 1.00 2 2
.............................................................................................TCACAGTGAACTGGTCTCTTTT....................................................... 22 1 1 1.00 1 1
.............................................................................................TCACAGTGAGCCGGTCTCTGT........................................................ 21 2 3 0.67 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTTTATT.................................................... 25 3 3 0.67 2 2
.............................................................................................TCACAGTGAACCGGGCTCTTTAA...................................................... 23 3 3 0.67 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTTTAAT.................................................... 25 3 3 0.67 2 2
.............................................................................................TCACAGTGAACCGGTCTCTTAG....................................................... 22 2 5 0.60 3 3
.............................................................................................TCACAGTGAACCGGTCTCAT......................................................... 20 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTATCTTT........................................................ 21 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCGCTTTAA...................................................... 23 3 2 0.50 1 1
.............................................................................................GCACAGTGAACCGGTCTCTTT........................................................ 21 1 2 0.50 1 1
..........................................................CGGGGCAGTAGAACTGTCTAAGA......................................................................................... 23 3 2 0.50 1 1
.............................................................................................TCACAGTGAAACGGTCTCTTTA....................................................... 22 2 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTCGA......................................................... 20 2 2 0.50 1 1
.............................................................................................TCTCAGTGAACCGGTCTCTTT........................................................ 21 1 2 0.50 1 1
.............................................................................................TCACAGGGAACCGGTCTCTTT........................................................ 21 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTCG....................................................... 22 2 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTCTC......................................................... 20 1 2 0.50 1 1
.............................................................................................TCACAGGGAACCGGTCTCTATAT...................................................... 23 3 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGGCTCT.......................................................... 19 1 2 0.50 1 1
.............................................................................................TCACAGTGAAGCGGTCTCTT......................................................... 20 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTCAAT........................................................ 21 2 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTC........................................................ 21 1 2 0.50 1 1
.............................................................................................TCACAGGGAACCGGTCTCTAT........................................................ 21 2 2 0.50 1 1
........................................................................................................................................TTTACTCAGGTTTCCACTG............... 19 0 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTTAAC..................................................... 24 2 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTCG.......................................................... 19 1 2 0.50 1 1
.............................................................................................TCACAGTGAAGCGGTCTCTTT........................................................ 21 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTTTTT........................................................ 21 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGACTCTTT........................................................ 21 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCACTT......................................................... 20 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTAT.......................................................... 19 1 2 0.50 1 1
.............................................................................................TCACAGTGAACCGGTCTCTAGA....................................................... 22 3 4 0.50 2 2
.............................................................................................TCACAGTGAACCGGTCTCTAAAT...................................................... 23 3 5 0.40 2 2
.............................................................................................TCACAGTGAACCGGTCTCAA......................................................... 20 2 3 0.33 1 1
.............................................................................................TCACAGTGAACCGGTCTCTCTAA...................................................... 23 3 6 0.33 2 2
.............................................................................................TCACAGAGAACCGGTCTCTT......................................................... 20 1 3 0.33 1 1
.............................................................................................TCACAGTGAACCGGTCTCTGTA....................................................... 22 2 3 0.33 1 1
.............................................................................................TCACAGTGAACCGGTCTCTAA........................................................ 21 2 6 0.33 2 2
.............................................................................................TCACAGTGAACGGGTCTCTTTAA...................................................... 23 3 3 0.33 1 1
.............................................................................................TCACAGTGAACCCGTCTCTTTAG...................................................... 23 3 4 0.25 1 1
.............................................................................................TCACAGGGAGCCGGTCTCTTTAT...................................................... 23 3 4 0.25 1 1
.............................................................................................TCACAGTGACCCGGTCTCTTAAT...................................................... 23 3 4 0.25 1 1
.............................................................................................TCACAGTGAACCGGTCTCTTAGT...................................................... 23 2 4 0.25 1 1
.............................................................................................TCACAGTGAGCCGGTCTCTTTGA...................................................... 23 3 5 0.20 1 1
.............................................................................................TCACAGTGAACCGGTCTAA.......................................................... 19 2 11 0.18 2 2
.............................................................................................TCACAGCGAGCCGGTCTCTTTA....................................................... 22 3 6 0.17 1 1
.............................................................................................TCACAGTGAGCCGGTCTCTC......................................................... 20 2 6 0.17 1 1
.............................................................................................TCACAGGGAGCCGGTCTCTTT........................................................ 21 2 6 0.17 1 1
.............................................................................................CCACAGTGAACCGGTCTCTTGA....................................................... 22 3 7 0.14 1 1
.............................................................................................TCACAGTGAACCGGTCTATTAA....................................................... 22 3 9 0.11 1 1
.............................................................................................TCACAGTGAACCGGTCTCAAAT....................................................... 22 3 13 0.08 1 1
.............................................................................................TCACAGTGAACCGGTCTCTAAG....................................................... 22 3 15 0.07 1 1
.............................................................................................TCACAGTGAACCGGTCTCAAA........................................................ 21 3 20 0.05 1 1

Anti-sense strand reads

AAATGGTATATACAAATTATAAAACGTTATTAACCGGAACAAGGACTCGACAACCTAAGCCCCGGCATCGTGACAGACTCTCCAAATGTAAAGAGTGTCACTTGGCCAGAGAAAAAGTCGACGAAGGACCGAAGAAAAATGAGTCCAAAGGTGACGGAAAAAAAAAAAAA

*****************************************..((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:47 AM