ID:

eca-mir-1249

 Coordinate:

chr28:41193631-41193771 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.1 -45.0 -45.0

Sense Strand Reads

GTGGATGTCGGAGCCGTGACGAGGAGGCTGATGGGGCTCCTGAAGTCTCAGTCCCAGCTCATCTTGTTCCTCAGATTCTTGTTTGCGTGGGGAGGAGGGAGGAGATGGGCCAAGTTgggTgTGggTGGttgGgggTTgggggggTTgTTgtggTGGgGttgTggTtgTgGTggTTgttGtgggtGgTgttGgtGgGTgTgTTggTGGttGggTTTggTGtTTTgggtGGgTGTTGtTgggT

***********************************.(((((.((.((((((.(((((((((((((.((((((...(((((........))))).)))))).)))))))))...........))))...)))))).)).)))))...............................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCA.......................................................................................... 22 0 1 14.00 14 14
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTC........................................................................................... 21 0 1 6.00 6 6
.................................................................................................................................ACGCCCTTCCCCCCCTTCT............................................................................................. 19 0 1 4.00 4 4
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCAA......................................................................................... 23 1 1 3.00 3 3
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCT.......................................................................................... 22 1 1 3.00 3 3
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCGA......................................................................................... 23 2 1 2.00 2 2
.................................................................................................................................CCGCCCTTCCCCCCCTTCTTCA.......................................................................................... 22 1 1 2.00 2 2
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTA........................................................................................... 21 1 1 2.00 2 2
.................................................................................................................................ACGCCCTTCCCCCCCTTCTT............................................................................................ 20 0 1 2.00 2 2
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCAAT........................................................................................ 24 2 1 2.00 2 2
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCAT......................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................ACGCCCTTCCCCCCGTTCTTCT.......................................................................................... 22 2 1 1.00 1 1
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTAAC......................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................ACGCCCTTCGCCCCCTTCTTCAT......................................................................................... 23 2 1 1.00 1 1
.................................................................................................................................ACGCCCTTCCCCCCCTTCTA............................................................................................ 20 1 1 1.00 1 1
.................................................................................................................................ACGCCCTTCCCCCCCTTCTACAA......................................................................................... 23 2 1 1.00 1 1
................................................................................................................................AACGCCCTTCCCCCCCTTCTTA........................................................................................... 22 1 1 1.00 1 1
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCAG......................................................................................... 23 1 1 1.00 1 1
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTAAT......................................................................................... 23 2 1 1.00 1 1
................................................................................................................................AACGCCCTTCCCCCCCTTCTT............................................................................................ 21 0 1 1.00 1 1
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCAAAA....................................................................................... 25 3 3 0.67 2 2
.................................................................................................................................ACGCCCTTCCCCCCCTTCTGCAA......................................................................................... 23 2 2 0.50 1 1
.................................................................................................................................CCGCCCTTCCCCCCCTTCTTC........................................................................................... 21 1 2 0.50 1 1
.................................................................................................................................ACGCCCTTCCCCCCCTTCTTCATT........................................................................................ 24 2 2 0.50 1 1
.................................................................................................................................ACGCCCTTCCCCCCCTTCTAAAG......................................................................................... 23 3 2 0.50 1 1
.................................................................................................................................CCGCCCTTCCCCCCCTTCTTCAT......................................................................................... 23 2 3 0.33 1 1
.................................................................................................................................ACGCCCTTCACCCCCTTCTAC........................................................................................... 21 2 4 0.25 1 1
.................................................................................................................................CCGCCCTTCCCCCCCTTCT............................................................................................. 19 1 6 0.17 1 1
.................................................................................................................................CCGCCCTTCCCCCCCTTCTTCAGA........................................................................................ 24 3 7 0.14 1 1

Anti-sense strand reads

CACCTACAGCCTCGGCACTGCTCCTCCGACTACCCCGAGGACTTCAGAGTCAGGGTCGAGTAGAACAAGGAGTCTAAGAACAAACGCACCCCTCCTCCCTCCTCTACCCGGTTCAAgggAgACggACCttgCgggAAgggggggAAgAAgtggACCgCttgAggAtgAgCAggAAgttCtgggtCgAgttCgtCgCAgAgAAggACCttCggAAAggACtAAAgggtCCgACAACtAgggA

***********************************.(((((.((.((((((.(((((((((((((.((((((...(((((........))))).)))))).)))))))))...........))))...)))))).)).)))))...............................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:59 AM