ID:

eca-mir-1248

 Coordinate:

chr19:24793833-24793925 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.4 -36.3

Sense Strand Reads

GAAAGAGAGGTAATTTGTTTGTTAAACATTAAAATGTTAGCCAGATTTTATCCTTCTTGTATAAGCACTGTGCTAAAATTGCAGAAACTAGGATCACTTCTTGGTTTTTGTAATAATGCTAGCAGAGTACACACAAGAAGAAAAGTGACTGCACTAGATTGTAAAGACTGGGGTGGACCTCTTTCTTAATGTC

***********************************.((((.((((((((...((((((((......(((.(((((..((((((((((((((((.....)))))))))))))))).....))))).)))....)))))))).)))))..)))..)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTG.................. 27 0 1 24.00 24 24
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTGGACC.............. 30 0 1 20.00 20 20
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTGGACT.............. 30 1 1 11.00 11 11
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGT................... 26 0 1 10.00 10 10
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTGGACCT............. 31 0 1 8.00 8 8
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTG.................. 26 0 1 6.00 6 6
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTA.................. 27 1 1 5.00 5 5
...................................................................................................................................................ACTGCACTAGATTGTAAAGACTGGGGT................... 27 0 1 4.00 4 4
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTT.................. 27 1 1 3.00 3 3
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTGGACT.............. 31 1 1 3.00 3 3
...................................................................................................................................................ACTGCACTAGATTGTAAAGACT........................ 22 0 1 3.00 3 3
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGG.................... 25 0 1 3.00 3 3
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTGGACCT............. 32 0 1 2.00 2 2
.....................................................................................................................................................TGCACTAGATTGTAAAGACT........................ 20 0 1 2.00 2 2
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTGGACC.............. 31 0 1 2.00 2 2
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTGGAC............... 29 0 1 2.00 2 2
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTGGACCTC............ 32 0 1 2.00 2 2
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTGTC................ 29 2 1 2.00 2 2
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGG...................... 22 0 1 2.00 2 2
..................................................TCCTTCTTGTATAAGCACTGTGCT....................................................................................................................... 24 0 1 1.00 1 1
..................................................TCCTTCTTGTATAAGCACTG........................................................................................................................... 20 0 1 1.00 1 1
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTGGACCTCT........... 34 0 1 1.00 1 1
..................................................TCCTTCTTGTATAAGCACTGTGCTAAAATT................................................................................................................. 30 0 1 1.00 1 1
.................................................................................................................................................................TAAAGACTGGGGTGGACCTCT........... 21 0 1 1.00 1 1
...........................................................................................................................................GAAAAGTGACTGCACTAGATTGTAAAGACT........................ 30 0 1 1.00 1 1
....................................................................................................................................................CTGCACGAGGTTGTAAAGAGTGGGGTG.................. 27 3 1 1.00 1 1
.......................................................................................................................................AGAAGAAAAGTGACTGCACTAGATTGTA.............................. 28 0 1 1.00 1 1
....................................................................................................................................................CTGCACTAGATTGTAAACACTGGGGT................... 26 1 1 1.00 1 1
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTGTT................ 29 2 1 1.00 1 1
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTGGT................ 29 1 1 1.00 1 1
......................................................................................................................CTAGCAGAGTACACACAAGAAGAAAAGTGACTG.......................................... 33 0 1 1.00 1 1
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGGGGACT.............. 30 2 1 1.00 1 1
...................................................................................................................................................ACTGCACTAGATTGTAAAGACTGGGGTGGACC.............. 32 0 1 1.00 1 1
......................................................................................................................................................GCACTAGATTGTAAAGACTGGGGTGGACCT............. 30 0 1 1.00 1 1
...................................................................................................................................................ACTGCACTAGATTGTAAAGACTGGGGTA.................. 28 1 1 1.00 1 1
....................................................................................................................................................TTGCACTAGATTGTGAAGACTGGGGTGGACCTCTT.......... 35 2 1 1.00 1 1
....................................................................................................................................................TTGCACTAGATTGTAAAGACTGGGGTGGACCTCTT.......... 35 1 1 1.00 1 1
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGT...................... 23 1 1 1.00 1 1
...................................................................................................................................................ACTGCACTAGATTGTAAAGACTGGGG.................... 26 0 1 1.00 1 1
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGTTT................. 28 2 1 1.00 1 1
.....................................................................................................................................................TGCACTAGATTGTAAAGACAGGGGTGGACCT............. 31 1 1 1.00 1 1
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTA.................. 26 1 1 1.00 1 1
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTGGACCTCA........... 33 1 1 1.00 1 1
.............................................................................................................................................AAAGTGACTGCACTAGATTGTAAAGACTGGGGTGG................. 35 0 1 1.00 1 1
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTT.................. 26 1 1 1.00 1 1
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTGGACCTCTT.......... 34 0 1 1.00 1 1
.....................................................................................................................................................TGCACTAGATTGGAAAGACTGGGGTG.................. 26 1 1 1.00 1 1
.........................................................................................................................................................CTAGATTGTAAAGACTGGGGTGGGCCT............. 27 1 1 1.00 1 1
.....................................................................................................................................................TGCACTAGATTGTAAAGACTGGGGTGGACCTCTTT......... 35 0 1 1.00 1 1
....................................................................................................................................................CTGCACTAGATTGTAAAGACTGGGGGG.................. 27 1 1 1.00 1 1
....................................................................................................................................................CTGCACTAGATTGTAAAGACT........................ 21 0 1 1.00 1 1
..............................................................................................................................................AAGTGACTGCACTAGA................................... 16 0 2 0.50 1 1

Anti-sense strand reads

CTTTCTCTCCATTAAACAAACAATTTGTAATTTTACAATCGGTCTAAAATAGGAAGAACATATTCGTGACACGATTTTAACGTCTTTGATCCTAGTGAAGAACCAAAAACATTATTACGATCGTCTCATGTGTGTTCTTCTTTTCACTGACGTGATCTAACATTTCTGACCCCACCTGGAGAAAGAATTACAG

***********************************.((((.((((((((...((((((((......(((.(((((..((((((((((((((((.....)))))))))))))))).....))))).)))....)))))))).)))))..)))..)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:47 AM