ID:

eca-mir-124-1

 Coordinate:

chr2:57945143-57945210 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.5 -35.1 -34.7
mature

  1. eca-mir-124-1  chr2:57945184-57945205 -
  2. eca-mir-124-2  chr9:20522428-20522449 -
star

  1. eca-mir-124-1  chr2:57945146-57945166 -
  2. eca-mir-124-2  chr9:20522392-20522412 -

Sense Strand Reads

gTTgTtggTTTggTTggTTggTggTTTggTTggTCAGGAGAAAGGCCTCTCTCTCCGTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCCAAGAATGGGGCTGGCTGAGCACCGTCGGTCCGCGAGGGCCCGCCAAGGAACGAG

****************************************...((((((..(((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))..))))))....************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................CGTGTTCACAGCGGACCTTGAT........................................................................................... 22 0 2 0.50 1 1
..............................................................................................TAAGGCACGCGGTGAATGCCA..................................................... 21 0 2 0.50 1 1
..............................................................................................TAAGGCACGCGGTGAATGCCAA.................................................... 22 0 2 0.50 1 1

Anti-sense strand reads

gAAgAtggAAAggAAggAAggAggAAAggAAggAGTCCTCTTTCCGGAGAGAGAGGCACAAGTGTCGCCTGGAACTAAATTTACAGGTATGTTAATTCCGTGCGCCACTTACGGTTCTTACCCCGACCGACTCGTGGCAGCCAGGCGCTCCCGGGCGGTTCCTTGCTC

**************************************...((((((..(((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))..))))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:50 AM