ID:

eca-mir-1180

 Coordinate:

chr11:59216504-59216573 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.9 -50.7

Sense Strand Reads

CCAGGTGGTCACATTGTTGGCCCAGGAGGTGGCTCTGGGACAAAGCCCGTGTCTGCCTGGCCCACCCAGCCGGGAATAGTGCACGAGTTTGTTTCCGGCTCGAGTGGGTGTGTCGGAGGCGAGGCTGCTGCTCCCGAAGGAGCTGCCCCGGTGCagcgccctggggcctg

***********************************.((((((.(((((((.((((....((((((..((((((((((((.((....))))))))))))))...))))))....)))).))).))))..)).))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................................................TTTCCGGCTCGAGTGGGTGTGT......................................................... 22 0 1 80.00 80 80
...........................................................................................TTTCCGGCTCGAGTGGGTGTGG......................................................... 22 1 1 11.00 11 11
...........................................................................................TTTCCGGCTCGAGTGGGTGTGTAA....................................................... 24 2 1 3.00 3 3
...........................................................................................TTTCCGGCTCGAGTGGGTGTGTA........................................................ 23 1 1 3.00 3 3
...........................................................................................TTTCCGGCTCGAGTGGGTGTGA......................................................... 22 1 1 2.00 2 2
...........................................................................................TTTCCGGCTCGAGTGGGTGTGTAT....................................................... 24 2 1 2.00 2 2
...........................................................................................TTTCCGGCTCGAGTGGGTGT........................................................... 20 0 1 2.00 2 2
...........................................................................................TTTCCGGCTCGAGTGGGTGTG.......................................................... 21 0 1 2.00 2 2
...........................................................................................TTTCCGGCTCGAGTGGGTGTGTTT....................................................... 24 2 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGTGGGTGTGTAAT...................................................... 25 3 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGTGGGTGGGTAT....................................................... 24 3 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGTGGGTGCGT......................................................... 22 1 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGTGGGTGAGT......................................................... 22 1 1 1.00 1 1
...........................................................................................TTTCCAGCTCGAGTGGGTGTGTT........................................................ 23 2 1 1.00 1 1
............................................................................TAGTGCACGAGTTTGTTTCCGGCTCGAGT................................................................. 29 0 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGTGGGCGTGT......................................................... 22 1 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGTGGGTGGGT......................................................... 22 1 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGTGGGTGTGTACT...................................................... 25 3 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGTGGGTGTGTT........................................................ 23 1 1 1.00 1 1
...........................................................................................TTTCCGGCTCGAGGGGGTGTGT......................................................... 22 1 1 1.00 1 1
...........................................................................................TTTCCGCCTCGAGTGGGTGAGG......................................................... 22 3 4 0.25 1 1
...................................................TCTGCCTGGCCCACCCTGCCGTT................................................................................................ 23 3 15 0.07 1 1

Anti-sense strand reads

GGTCCACCAGTGTAACAACCGGGTCCTCCACCGAGACCCTGTTTCGGGCACAGACGGACCGGGTGGGTCGGCCCTTATCACGTGCTCAAACAAAGGCCGAGCTCACCCACACAGCCTCCGCTCCGACGACGAGGGCTTCCTCGACGGGGCCACGTgGgGGGtggggGGtg

***********************************.((((((.(((((((.((((....((((((..((((((((((((.((....))))))))))))))...))))))....)))).))).))))..)).))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:36 AM