ID:

eca-mir-106b

 Coordinate:

chr13:8034691-8034749 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TAATGTCCTCACTCATTGCCTCCTCCCTCCCACTCAGGCCCTGCCGGGGCTAAAGTGCTGACAGTGCAGATAGTGGTCCTCTCCATGCTACCGCACTGTGGGTACTTGCTGCTCCAGTAGGGCACGCACAGCGTCCCTGGAGGGAAAGGCCTTCTCCCT

***********************************..(((((((.(((((..(((((((.(((((((.....((((......))))......))))))).)))))))...))))).))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................................................TACCGCACTGTGGGTACTTGCT................................................. 22 0 1 136.00 136 136
..........................................................................................CCGCACTGTGGGTACTTGCT................................................. 20 0 1 99.00 99 99
..................................................TAAAGTGCTGACAGTGCAGAT........................................................................................ 21 0 1 82.00 82 82
..................................................TAAAGTGCTGACAGTGCAGATA....................................................................................... 22 0 1 73.00 73 73
..........................................................................................CCGCACTGTGGGTACTTGCTGCAG............................................. 24 2 1 39.00 39 39
..........................................................................................CCGCACTGTGGGTACTTGCTGCT.............................................. 23 0 1 39.00 39 39
..........................................................................................CCGCACTGTGGGTACTTGCTGCA.............................................. 23 1 1 36.00 36 36
..........................................................................................CCGCACTGTGGGTACTTGCTGT............................................... 22 1 1 34.00 34 34
..........................................................................................CCGCACTGTGGGTACTTGCTG................................................ 21 0 1 30.00 30 30
..................................................TAAAGTGCTGACAGTGCAGA......................................................................................... 20 0 1 30.00 30 30
..........................................................................................CCGCACTGTGGGTACTTGCTGC............................................... 22 0 1 28.00 28 28
..........................................................................................CCGCACTGTGGGTACTTGCTGA............................................... 22 1 1 18.00 18 18
..................................................TAAAGTGCTGACAGTGCAGATT....................................................................................... 22 1 1 18.00 18 18
..........................................................................................CCGCACTGTGGGTACTTGCTGCAA............................................. 24 2 1 16.00 16 16
..........................................................................................CCGCACTGTGGGTACTTGCTGCAT............................................. 24 2 1 15.00 15 15
..........................................................................................CCGCACTGTGGGTACTTGCTGAAA............................................. 24 3 1 13.00 13 13
..........................................................................................CCGCACTGTGGGTACTTGCTGAA.............................................. 23 2 1 10.00 10 10
..................................................TAAAGTGCTGACAGTGCAGATAGTGGTCCTC.............................................................................. 31 0 1 9.00 9 9
..................................................TAAAGTGCTGACAGTGCAGAAA....................................................................................... 22 1 1 9.00 9 9
..........................................................................................CCGCACTGTGGGTACTTGC.................................................. 19 0 1 7.00 7 7
........................................................................................TACCGCACTGTGGGTACTTGCA................................................. 22 1 1 6.00 6 6
..................................................TAAAGTGCTGACAGTGCAGATG....................................................................................... 22 1 1 6.00 6 6
..........................................................................................CCGCACTGTGGGTACTTGCTGCTT............................................. 24 1 1 6.00 6 6
..........................................................................................CCGCACTGTGGGTACTTGCA................................................. 20 1 1 5.00 5 5
..........................................................................................CCGCACTGTGGGTACTTGCTGCAAG............................................ 25 3 1 5.00 5 5
..................................................TAAAGTGCTGACAGTGCAGATAT...................................................................................... 23 1 1 5.00 5 5
........................................................................................TACCGCACTGTGGGTACT..................................................... 18 0 1 5.00 5 5
..........................................................................................CCGCACTGTGGGTACTTGCTGCAAA............................................ 25 3 1 4.00 4 4
........................................................................................TACCGCACTGTGGGTACTTGCTT................................................ 23 1 1 4.00 4 4
..........................................................................................CCGCACTGTGGGTACTTGCTT................................................ 21 1 1 4.00 4 4
..................................................TAAAGTGCTGACAGTGCAGAGA....................................................................................... 22 1 1 3.00 3 3
..........................................................................................CCGCACTGTGGGTACTTGCTGTTT............................................. 24 2 1 3.00 3 3
..........................................................................................CCGCACTGTGGGTACTTGCTGCAAT............................................ 25 3 1 3.00 3 3
........................................................................................TACCGCACTGTGGGTACTTGCG................................................. 22 1 1 3.00 3 3
..................................................TAAAGTGCTGACAGTGCAGATATT..................................................................................... 24 1 1 3.00 3 3
..........................................................................................CCGCACTGTGGGTACTTGCTGCAGA............................................ 25 3 1 3.00 3 3
..........................................................................................CCGCACTGTGGGTACTTGCTGAGA............................................. 24 3 1 3.00 3 3
..........................................................................................CCGCACTGTGGGTACTTGCTGCAGT............................................ 25 3 1 3.00 3 3
..........................................................................................CCGCACTGTGGGTACTTGCTGCAAAA........................................... 26 3 1 2.00 2 2
..................................................TAAAGTGCTGATAGTGCAGATAG...................................................................................... 23 1 1 2.00 2 2
..........................................................................................CCGCACTGTGGGTACTTGCTGCATT............................................ 25 3 1 2.00 2 2
..........................................................................................CCGCACTGTGGGTACTTGCTGAG.............................................. 23 2 1 2.00 2 2
..........................................................................................CCGCACTGTGGGTACTTGCTGCATG............................................ 25 3 1 2.00 2 2
..........................................................................................CCGCACTGTGGGTACTTGCTA................................................ 21 1 1 2.00 2 2
..................................................TAAAGTGCTGACAGTGCAGATTGT..................................................................................... 24 1 1 2.00 2 2
..........................................................................................CCGCACTGTGGGTACTTGCTGTT.............................................. 23 1 1 2.00 2 2
..................................................TAAAGTGCTGACAGTGCAGATAGTGGTCCTTT............................................................................. 32 1 1 2.00 2 2
..........................................................................................CCGCACTGTGGGTACTTGCTGATA............................................. 24 2 1 2.00 2 2
........................................................................................TACCGCACTGTGGGTACTTGC.................................................. 21 0 1 2.00 2 2
........................................................................................TACCGCACTGTGGGTACTTAC.................................................. 21 1 1 2.00 2 2
..................................................TAAAGTGCTGACAGTGCAGAAC....................................................................................... 22 2 2 1.50 3 3
..........................................................................................CCGCACTGTGGGTACTTGCAA................................................ 21 2 2 1.50 3 3
..........................................................................................CCGCACTGTGGGTACTTGCTGCG.............................................. 23 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGCTTTAT.......................................... 27 3 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGATAGTGGTCCTAG............................................................................. 32 2 1 1.00 1 1
..........................................................................................CCGCACAGTGGGTACTTGCTGT............................................... 22 2 1 1.00 1 1
........................................................................................TACCGCACTGTGGGTACTTGCTAAA.............................................. 25 3 1 1.00 1 1
........................................................................................TACCGCACTGTGGGTACTTGCTG................................................ 23 0 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGATAGAAC................................................................................... 26 3 1 1.00 1 1
.............................................................................CCTCTCCATGCTACCGCACTGTGGGTACTTGCT................................................. 33 0 1 1.00 1 1
........................................................................................TACCGCACTGTGGGGACTTGCT................................................. 22 1 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGGTA....................................................................................... 22 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGGACTTGCTGCA.............................................. 23 2 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGAAG............................................. 24 3 1 1.00 1 1
..........................................................................................CCGCACTGTGGGAACTTGCTGC............................................... 22 1 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGGAGATAA...................................................................................... 23 2 1 1.00 1 1
........................................................................................TACCGCATTGTGGGTACTTGCTG................................................ 23 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGCATGA........................................... 26 3 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGATAGTGGTC................................................................................. 28 0 1 1.00 1 1
........................................................................................TACCGCACTGTGGGTACTTGTT................................................. 22 1 1 1.00 1 1
..........................................................................................CGGCACTGTGGGTACTTGCTGCT.............................................. 23 1 1 1.00 1 1
..........................................................................................CTGCACTGTGGGTACTTGCTGC............................................... 22 1 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGATC....................................................................................... 22 1 1 1.00 1 1
.........................................................................................ACCGCACTGTGGGTACTTGCTGCA.............................................. 24 1 1 1.00 1 1
...................................................AAAGTGCTGACAGTGCAGATAT...................................................................................... 22 1 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGAAAA...................................................................................... 23 2 2 1.00 2 2
..................................................TAAAGTGCTGACAGTGCAGATTT...................................................................................... 23 2 2 1.00 2 2
..................................................TAAAGTGCTGACAGTGCAGATATG..................................................................................... 24 2 1 1.00 1 1
........................................................................................TACCGCACTGTGGGTACTTGCTAT............................................... 24 2 1 1.00 1 1
..................................................TAAAGTGCTGATAGTGCAGATAGT..................................................................................... 24 1 1 1.00 1 1
........................................................................................TACCGCACTGTGGGTACTTACT................................................. 22 1 1 1.00 1 1
........................................................................................TGCCGCACTGTGGGTACTTG................................................... 20 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTAA............................................... 22 2 1 1.00 1 1
........................................................................................TACCGCACTGTGGGTACTTGCTGT............................................... 24 1 1 1.00 1 1
.........................................................................................ACCGCACTGTGGGTACTTGCTGCT.............................................. 24 0 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCGGT............................................... 22 2 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTACAT............................................. 24 3 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACT..................................................... 16 0 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTAAG.............................................. 23 3 1 1.00 1 1
.........................................................................................AGCGCACTGTGGGTACTTGCT................................................. 21 1 1 1.00 1 1
..................................................CAAAGTGCTGACAGTGCAGATAGA..................................................................................... 24 2 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGCACT............................................ 25 2 1 1.00 1 1
.........................................................................................ACCGCACTGTGGGTACTTGCT................................................. 21 0 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGCTAT............................................ 25 2 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGCTTTAGA......................................... 28 3 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGTAA............................................. 24 3 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTG................................................... 18 0 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGTTA............................................. 24 2 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTGGCTGC............................................... 22 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTAGA.............................................. 23 3 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGATAGTGGTCCTTA............................................................................. 32 2 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGATAAA..................................................................................... 24 2 1 1.00 1 1
........................................................................................TACCGCGCTGTGGGTACTTGCT................................................. 22 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTGGCTGCAG............................................. 24 3 1 1.00 1 1
..................................................TAAAGTGCTGAGAGTGCAGATAA...................................................................................... 23 2 1 1.00 1 1
..........................................................................................CCGCACGGTGGGTACTTGCTGC............................................... 22 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGAGT............................................. 24 3 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCGGCAG............................................. 24 3 2 1.00 2 2
..........................................................................................CCGCACTGTGTGTACTTGCTGCAT............................................. 24 3 1 1.00 1 1
..................................................TAAAGTGCTGGCAGTGCAGAT........................................................................................ 21 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGAT.............................................. 23 1 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGATAGT..................................................................................... 24 0 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCTGAAT............................................. 24 3 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTGGCT................................................. 20 1 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGAAAG...................................................................................... 23 1 1 1.00 1 1
..........................................................................................CCGCACTGTGGGTACTTGCAT................................................ 21 2 1 1.00 1 1
..................................................CAAAGTGCTGACAGTGCAGATAGT..................................................................................... 24 1 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGAAG....................................................................................... 22 2 2 1.00 2 2
..........................................................................................CCGCACTGTGGGGACTTGCT................................................. 20 1 1 1.00 1 1
..................................................TAAAGTGCTGACAGTGCAGAAT....................................................................................... 22 2 3 0.67 2 2
..................................................TAAGGTGCTGACAGTGCAGA......................................................................................... 20 1 2 0.50 1 1
..........................................................................................CCGCACTGTGGGTAGTGGCTGCT.............................................. 23 2 2 0.50 1 1
..................................................TAAAGTGCTGACAGTGCAAA......................................................................................... 20 1 2 0.50 1 1
..........................................................................................TCGCACTGTGGGTACTTGCTGCAT............................................. 24 3 2 0.50 1 1
................................CTCAGGCCCTGCCGGGGC............................................................................................................. 18 0 2 0.50 1 1
..........................................................................................CCGCACGGTGGGTACTTGCTGCTTT............................................ 25 3 2 0.50 1 1
..................................................TAAAGTGCTGACAGTGCAA.......................................................................................... 19 1 5 0.40 2 2
..................................................CAAAGTGCTAACAGTGCAGATAG...................................................................................... 23 2 3 0.33 1 1
..................................................TAAAGTGCTGACAGTGCAGATGTA..................................................................................... 24 3 3 0.33 1 1
..........................................................................................CCGCACTGTGGGTACTTGCAGT............................................... 22 2 3 0.33 1 1
..........................................................................................CCGCACTGTGGGTACTTGAA................................................. 20 2 4 0.25 1 1
........................................................................................TACCGCTCTATGGGTACTTACT................................................. 22 3 5 0.20 1 1
..........................................................................................CCGCACTGTGGGTAGTGGCTGCA.............................................. 23 3 5 0.20 1 1
..................................................TAAAGTGCTGACGGTGCAGAAAA...................................................................................... 23 3 9 0.11 1 1
..................................................TAAAGTGCTGACAGAGCA........................................................................................... 18 1 10 0.10 1 1
..................................................CAAAGTGCTAACAGTGCAGATAT...................................................................................... 23 3 15 0.07 1 1
..................................................TAAAGTGCTGACAGTGCAGGAT....................................................................................... 22 3 20 0.05 1 1

Anti-sense strand reads

ATTACAGGAGTGAGTAACGGAGGAGGGAGGGTGAGTCCGGGACGGCCCCGATTTCACGACTGTCACGTCTATCACCAGGAGAGGTACGATGGCGTGACACCCATGAACGACGAGGTCATCCCGTGCGTGTCGCAGGGACCTCCCTTTCCGGAAGAGGGA

***********************************..(((((((.(((((..(((((((.(((((((.....((((......))))......))))))).)))))))...))))).))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:38 AM