ID:

eca-mir-106a

 Coordinate:

chrX:106692701-106692781 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.2 -29.1 -29.1
mature

  1. eca-mir-17  chr17:61792416-61792438 +
  2. eca-mir-106a  chrX:106692747-106692769 -
star

Sense Strand Reads

GAGGATGGAAGAGAAGAGCTGGTGGAAGATGATTTCGCTGCAGGAATAGGCCTTGGCCATGTCAAAGTGCTTACAGTGCAGGTAGCTTTCTGAGATCTACTGCAATGCAAGCACTTCTTACATTACCATGGTGATTTAATCCACGGCTCCTGAGGACTGTGGTTTGTGCATAATTAAGTTG

***********************************************..(((.(((..((((..((((((((.((.(((((.(((.(((...))).)))))))).)).))))))))...))))..))).)))..*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................CAAAGTGCTTACAGTGCAGGTAG................................................................................................ 23 0 2 248.50 497 497
..............................................................CAAAGTGCTTACAGTGCAGGTAGA............................................................................................... 24 1 2 61.50 123 123
...............................................................AAAGTGCTTACAGTGCAGGTAGC............................................................................................... 23 0 1 23.00 23 23
..............................................................CAAAGTGCTTACAGTGCAGGTAGAAT............................................................................................. 26 2 1 16.00 16 16
..............................................................CAAAGTGCTTACAGTGCAGGTA................................................................................................. 22 0 2 16.00 32 32
..............................................................CAAAGTGCTTACAGTGCAGGTAA................................................................................................ 23 1 2 14.50 29 29
..............................................................CAAAGTGCTTACAGTGCAGGTAT................................................................................................ 23 1 2 13.50 27 27
..............................................................CAAAGTGCTTACAGTGCAGGT.................................................................................................. 21 0 2 12.50 25 25
..............................................................CAAAGTGCTTACAGTGCAGGTAGTT.............................................................................................. 25 1 2 10.50 21 21
..............................................................CAAAGTGCTTACAGTGCAGG................................................................................................... 20 0 2 9.50 19 19
..............................................................CAAAGTGCTTACAGTGCAGGTAGAA.............................................................................................. 25 2 2 7.50 15 15
..............................................................CAAAGTGCTTACAGTGCAGGTAGATT............................................................................................. 26 1 1 5.00 5 5
..............................................................CAAAGTGCTTACAGTGCAGGTAAA............................................................................................... 24 2 2 5.00 10 10
...............................................................AAAGTGCTTACAGTGCAGGTAG................................................................................................ 22 0 2 5.00 10 10
...............................................................AAAGTGCTTACAGTGCAGGTAGA............................................................................................... 23 1 2 4.00 8 8
..............................................................CAAAGTGCTTACAGTGCAGGTAGAT.............................................................................................. 25 1 1 4.00 4 4
.............................................................TCAAAGTGCTTACAGTGCAGGT.................................................................................................. 22 0 2 4.00 8 8
..............................................................CAAAGTGCTTACAGTGCAGGTAGC............................................................................................... 24 0 1 3.00 3 3
..............................................................CAAAGTGCTTACAGTGCAGGTAGGATT............................................................................................ 27 2 1 3.00 3 3
..............................................................CAAAGTGCTTACAGTGCAGGTAGAATT............................................................................................ 27 2 1 3.00 3 3
..............................................................CAAAGTGCTTACAGTGCAGGTAGTTT............................................................................................. 26 1 1 3.00 3 3
.............................................................TCAAAGTGCTTACAGTGCAGGTAG................................................................................................ 24 0 2 2.50 5 5
.................................................................................................TACTGCAATGCAAGCACTTCTT.............................................................. 22 0 1 2.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAAAA.............................................................................................. 25 3 2 2.00 4 4
..................................................................................................ACTGCAATGCAAGCACTTCTTA............................................................. 22 0 1 2.00 2 2
...............................................................CAAGTGCTTACAGTGCAGGTAGC............................................................................................... 23 1 1 2.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGTTTTT........................................................................................... 28 2 1 2.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGACT............................................................................................. 26 2 1 2.00 2 2
......................................................................................TTTCTGAGATCTACTGCAATGCAAGCACTTCTTA............................................................. 34 0 1 2.00 2 2
..............................................................CAAAGTGCTTACGGTGCAGGTAGAAT............................................................................................. 26 3 1 2.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGAAC............................................................................................. 26 3 2 2.00 4 4
..............................................................CAAAGTGCTTACAGTGCAGGTAAGA.............................................................................................. 25 3 3 1.67 5 5
..............................................................CAAAGTGCTTACAGTGAAGGTAG................................................................................................ 23 1 2 1.50 3 3
..............................................................CAAAGTGCTTAGAGTGCAGGTAG................................................................................................ 23 1 2 1.50 3 3
..............................................................CAAAGTGCTTACAGTGCAGGTAGTATT............................................................................................ 27 2 2 1.50 3 3
..............................................................CAAAGTGCTTACAGTGCAGGTAC................................................................................................ 23 1 2 1.50 3 3
..............................................................CAAAGTGCTTACAGTGCAGGA.................................................................................................. 21 1 2 1.50 3 3
..............................................................CAAAGTGCTTACAGTGCAGGTGG................................................................................................ 23 1 2 1.50 3 3
..............................................................CAAAGTGCTTACAGTGCAGGTAAG............................................................................................... 24 2 2 1.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGAATTTT.......................................................................................... 29 3 1 1.00 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGTATTCTT......................................................................................... 30 3 1 1.00 1 1
..............................................................CAAAGTGCTTACGGTGCAGGTAGC............................................................................................... 24 1 1 1.00 1 1
.............................................................TCAAAGTGCTTACAGTGCAGGTAGA............................................................................................... 25 1 2 1.00 2 2
.................................................................................................TACTGCAATGCAAGCACTTCTTT............................................................. 23 1 1 1.00 1 1
.............................................................TCAAAGTGCTTACAGTGCAGGTT................................................................................................. 23 1 2 1.00 2 2
..................................................................................................ACTGCAATGCAAGCACTTCTTAC............................................................ 23 0 1 1.00 1 1
...............................................................AAAGTGCTTACAGTGCAGGTAGAACT............................................................................................ 26 3 2 1.00 2 2
..................................................................................................ACTGCAATGGAAGCACTTCTT.............................................................. 21 1 1 1.00 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGGAT............................................................................................. 26 2 1 1.00 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGATCTT........................................................................................... 28 3 1 1.00 1 1
..............................................................CAAAGTGCTTACAGTGGAGGTAGA............................................................................................... 24 2 2 1.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGTTTAT........................................................................................... 28 3 1 1.00 1 1
..............................................................CAAAGTGCTTAGAGTGCAGGTAGGATT............................................................................................ 27 3 1 1.00 1 1
.............................................................TCAAAGTGCTTACAGTGCAGGTA................................................................................................. 23 0 2 1.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGAGT............................................................................................. 26 2 2 1.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGATTT............................................................................................ 27 1 1 1.00 1 1
...............................................................AAAGTGCTTACAGTGCAGGAAGC............................................................................................... 23 1 1 1.00 1 1
...............................................................AAAGTGCTTACATTGCAGGTACC............................................................................................... 23 2 1 1.00 1 1
...........................GATGATGTCACTGCAGGAAGAGGCCTTGGCCATGT....................................................................................................................... 35 3 1 1.00 1 1
..............................................................CGAAGTGCTTACAGTGCAGGTAG................................................................................................ 23 1 2 1.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGAATTT........................................................................................... 28 3 1 1.00 1 1
..............................................................CAAAGTGCTTACAGGGCAGGTAGAAT............................................................................................. 26 3 1 1.00 1 1
.....................................................................................CTTTCTGAGATCTACTGCAATGCAAGCACTTCTTA............................................................. 35 0 1 1.00 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTATTT.............................................................................................. 25 2 2 1.00 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTATGT.............................................................................................. 25 2 1 1.00 1 1
..................................................................................................ACTGCAATGCAAGCACTTCTTT............................................................. 22 1 1 1.00 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTATG............................................................................................... 24 2 2 1.00 2 2
..............................................................CAAAGTGCTTACGGTGCAGGTAG................................................................................................ 23 1 2 1.00 2 2
.................................................................................................TACTGCAATGCAAGCACTTCTTA............................................................. 23 0 1 1.00 1 1
..............................................................GAAAGTGCTTACAGTGCAGGTAA................................................................................................ 23 2 2 1.00 2 2
..................................................................................................ACTGCAATGCAAGCACTTCTTAA............................................................ 23 1 1 1.00 1 1
...............................................................AAAGTGCTTACAGTGCAGGTAGGAT............................................................................................. 25 2 1 1.00 1 1
..............................................................CAAAGTGCTTACAGTGGAGGTAG................................................................................................ 23 1 2 1.00 2 2
..............................................................CAAAGTGCTAACAGTGCAGGTAG................................................................................................ 23 1 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGAA................................................................................................. 22 1 2 0.50 1 1
..............................................................CAAAGTGCTAACAGTGCAGGTAGA............................................................................................... 24 2 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTTA................................................................................................ 23 2 2 0.50 1 1
...............................................................AAAGTGCTTACAGTGCAGGT.................................................................................................. 20 0 2 0.50 1 1
.............................................................ACAAAGTGCTTACAGTGCAGGT.................................................................................................. 22 1 2 0.50 1 1
...............................................................AAAGTGCTTACAGTGCAGGTAT................................................................................................ 22 1 2 0.50 1 1
...............................................................AAAGTGCTTACAGTGCAGGTAGGA.............................................................................................. 24 2 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTTG................................................................................................ 23 1 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTATA............................................................................................... 24 2 2 0.50 1 1
...............................................................CAAGTGCTTACAGTGCAGGTAG................................................................................................ 22 1 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGAT.................................................................................................. 21 1 2 0.50 1 1
..............................................................CAAGGTGCTTACAGTGCAGGT.................................................................................................. 21 1 2 0.50 1 1
..............................................................CAAAGTGCTTACGGTGCAGGTA................................................................................................. 22 1 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGAAGT............................................................................................ 27 3 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGGAGG................................................................................................... 20 1 2 0.50 1 1
..............................................................CAAAGTACTTACAGTGCAGGTAG................................................................................................ 23 1 2 0.50 1 1
..............................................................CAAAGTGCTTACCGTGCAGGTAG................................................................................................ 23 1 2 0.50 1 1
..............................................................CAAAGTGCTTACGGTGCAGGTAGA............................................................................................... 24 2 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGCTAG................................................................................................ 23 1 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGGA.............................................................................................. 25 2 2 0.50 1 1
...............................................................AAAGTGCTTACAGTGCAGGTAGAA.............................................................................................. 24 2 2 0.50 1 1
..............................................................CAAAGTGCTTACAGAGCAGGTAG................................................................................................ 23 1 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGATAG................................................................................................ 23 1 2 0.50 1 1
..............................................................CATAGTGCTTACAGTGCAGGTAG................................................................................................ 23 1 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGG............................................................................................... 24 1 2 0.50 1 1
..............................................................CAAAGTACTGACAGTGCAGGTAG................................................................................................ 23 2 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGATAT............................................................................................ 27 2 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAGAAG............................................................................................. 26 3 2 0.50 1 1
...............................................................AAAGTGCTTACAGTGCAGGTA................................................................................................. 21 0 2 0.50 1 1
................................................................AAGTGCTTACAGTGCAGGT.................................................................................................. 19 0 2 0.50 1 1
..............................................................CAAAGTTCTAACAGTGCAGGTAGA............................................................................................... 24 3 2 0.50 1 1
..............................................................CAAAGTCCTTACAGTGCAGGTAGA............................................................................................... 24 2 2 0.50 1 1
..............................................................CAAAGTTCTTACAGTGCAGGTAT................................................................................................ 23 2 2 0.50 1 1
..............................................................CAAAGTGCTGACAGTGCAGGTAG................................................................................................ 23 1 2 0.50 1 1
.............................................................TCAAAGTGCTTACAGTGCAGGTAAA............................................................................................... 25 2 2 0.50 1 1
...............................................................AAAGTGCTTACAGTGCAGGTAA................................................................................................ 22 1 2 0.50 1 1
..............................................................CAAAGTGCTTACAGTGCAGAGA................................................................................................. 22 2 6 0.33 2 2
..............................................................CAAAGTGCTTACAGTGCAGGTAGTATTT........................................................................................... 28 3 3 0.33 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTGGG............................................................................................... 24 2 3 0.33 1 1
.............................................................TCAAAGTGCTTACAGTGCAGT................................................................................................... 21 1 3 0.33 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTAATT.............................................................................................. 25 2 3 0.33 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTGGA............................................................................................... 24 2 3 0.33 1 1
..............................................................CAAAGTGCTCACAGTGCAGCTAG................................................................................................ 23 2 3 0.33 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTATAA.............................................................................................. 25 3 3 0.33 1 1
..............................................................CAAAGTGCTAACAGTGCAGATAG................................................................................................ 23 2 3 0.33 1 1
..............................................................CAAAGTGCTCACAGTGCAGGTAG................................................................................................ 23 1 3 0.33 1 1
..............................................................CAAAGTGCTTACAGTGTAGGTAA................................................................................................ 23 2 3 0.33 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTGA................................................................................................ 23 2 3 0.33 1 1
..............................................................CAAAGTGCTTAAAGTGCAGGTAGTT.............................................................................................. 25 2 3 0.33 1 1
.............................................................TCAAAGTGCTTACAGTGCAGGAT................................................................................................. 23 2 4 0.25 1 1
................................................................CAGTGCTTACAGTGCAGGTAG................................................................................................ 21 1 4 0.25 1 1
...............................................................AAAGTGCTTACAGTGCAGGA.................................................................................................. 20 1 4 0.25 1 1
..............................................................CAAAGTGCTTACAGTGCAGAAA................................................................................................. 22 2 4 0.25 1 1
...............................................................CAAGTGCTTACAGTGCAGGTAGA............................................................................................... 23 2 4 0.25 1 1
..............................................................CAAAGTGCTTACAGTGCAGGAT................................................................................................. 22 2 5 0.20 1 1
..............................................................CAAAGTGCTTACAGTGCAGGTGGAGT............................................................................................. 26 3 5 0.20 1 1
..............................................................CAAAGTGCTAACAGTGCAGATAT................................................................................................ 23 3 15 0.07 1 1

Anti-sense strand reads

CTCCTACCTTCTCTTCTCGACCACCTTCTACTAAAGCGACGTCCTTATCCGGAACCGGTACAGTTTCACGAATGTCACGTCCATCGAAAGACTCTAGATGACGTTACGTTCGTGAAGAATGTAATGGTACCACTAAATTAGGTGCCGAGGACTCCTGACACCAAACACGTATTAATTCAAC

***********************************************..(((.(((..((((..((((((((.((.(((((.(((.(((...))).)))))))).)).))))))))...))))..))).)))..*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:14 PM