ID:

eca-mir-1-1

 Coordinate:

chr8:39912211-39912288 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.8 -35.5 -35.4
mature

  1. eca-mir-1-1  chr8:39912260-39912281 +
  2. eca-mir-1-2  chr22:48433554-48433575 +
star

Sense Strand Reads

TGGGAAAATAAAACATATCATGTTTTTACAGCTAAGAACTTAGTAATACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGCAATAAACTGCCAGGAGGGAACTAAACTGCCCCTGCTTCTTTCTAGG

***********************************.............((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).))))))............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................TGGAATGTAAAGAAGTATGTAT......................................................... 22 0 2 38.50 77 77
...................................................................................................TGGAATGTAAAGAAGTATGTAC......................................................... 22 1 2 2.50 5 5
...................................................................................................TGGAATGTAAAGAAGTATGTATT........................................................ 23 0 2 2.00 4 4
...................................................................................................TGGAATGTAAAGAAGTATGTAA......................................................... 22 1 2 1.50 3 3
...................................................................................................TGGAATGTAAAGAAGTATGT........................................................... 20 0 2 1.50 3 3
...................................................................................................TGGAATGTAAAGAAGTGTGTAT......................................................... 22 1 2 1.00 2 2
...................................................................................................TGGAATGTAAAGAAGTATGTA.......................................................... 21 0 2 1.00 2 2
..............................................................................................TCTTTTGGAATGTAAAGAAGTATGTAT......................................................... 27 3 1 1.00 1 1
...................................................................................................TGGAATGTAAAGAAGTATGTATA........................................................ 23 1 2 0.50 1 1
...................................................................................................TGGAATGTAAAGGAGTATGTAT......................................................... 22 1 2 0.50 1 1
...................................................................................................TCGAATGTAAAGAAGTATGTAT......................................................... 22 1 2 0.50 1 1
...................................................................................................TGGAATGTAAGGAAGTATGTAT......................................................... 22 1 2 0.50 1 1
...................................................................................................TGGAATGTAAAGAAGTATGAAT......................................................... 22 1 2 0.50 1 1
...................................................................................................TGGAATGTAAAGAAGTATGTAGT........................................................ 23 1 2 0.50 1 1
...................................................................................................TGGAATGTAAAGAAGTATGTAAG........................................................ 23 2 3 0.33 1 1

Anti-sense strand reads

ACCCTTTTATTTTGTATAGTACAAAAATGTCGATTCTTGAATCATTATGGATGAGTCTCATGTATGAAGAAATACATGGGTATACTTGTATGTTACGATACCTTACATTTCTTCATACATAAAAACCATCCGTTATTTGACGGTCCTCCCTTGATTTGACGGGGACGAAGAAAGATCC

***********************************.............((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).))))))............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:10 PM