ID:

eca-let-7d

 Coordinate:

chr23:54148818-54148904 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.5 -48.5 -48.5

Sense Strand Reads

ATTTGAAGTGCATCTGCCAAGTAGAAGACCGGCAAGAAAAAAAATGGGTTCCTAGGAAGAGGTAGTAGGTTGCATAGTTTTAGGGCAGGGATTTTGCCCACAAGGAGATAACTATACGACCTGCTGCCTTTCTTAGGGCCTGATTATTCCACGGTCACCTGTTTCCTTGCTGCCTTGCTTTGGTGTA

******************************************..(((((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).))))))))))))))))))))))))))......*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................AGAGGTAGTAGGTTGCATAGTT............................................................................................................ 22 0 1 1672.00 1672 1672
.........................................................AGAGGTAGTAGGTTGCATAGT............................................................................................................. 21 0 1 544.00 544 544
...............................................................................................................CTATACGACCTGCTGCCTTTCT...................................................... 22 0 1 290.00 290 290
.........................................................AGAGGTAGTAGGTTGCATAGTTT........................................................................................................... 23 0 1 103.00 103 103
.........................................................CGAGGTAGTAGGTTGCATAGTT............................................................................................................ 22 1 1 71.00 71 71
.........................................................AGAGGTAGTAGGTTGCATAGTTA........................................................................................................... 23 1 1 65.00 65 65
...............................................................................................................CTATACGACCTGCTGCCTTTCA...................................................... 22 1 1 57.00 57 57
.........................................................AGAGGTAGTAGGTTGCATAG.............................................................................................................. 20 0 1 48.00 48 48
...............................................................................................................CTATACGACCTGCTGCCTTTC....................................................... 21 0 1 46.00 46 46
.........................................................AGAGGTAGTAGGTTGCATAGTA............................................................................................................ 22 1 1 24.00 24 24
.........................................................CGAGGTAGTAGGTTGCATAGT............................................................................................................. 21 1 1 23.00 23 23
................................................................................................................TATACGACCTGCTGCCTTTCT...................................................... 21 0 1 21.00 21 21
...............................................................................................................CTATACGACCTGCTGCCTTT........................................................ 20 0 1 14.00 14 14
...............................................................................................................CTATACGACCTGCTGCCTTTCC...................................................... 22 1 1 14.00 14 14
.........................................................AGAGGTAGTAGGTTGCATAGA............................................................................................................. 21 1 1 12.00 12 12
.........................................................AGAGGTAGTAGGGTGCATAGTT............................................................................................................ 22 1 1 10.00 10 10
.........................................................AGAGGTAGTAGGTTGCATAATT............................................................................................................ 22 1 1 10.00 10 10
................................................................................................................TATACGACCTGCTGCCTTTCA...................................................... 21 1 1 9.00 9 9
.........................................................AGAGGTAGTAGGTTGCATAGTG............................................................................................................ 22 1 1 8.00 8 8
.........................................................AGAGGTAGTAGGTTGTATAGTT............................................................................................................ 22 1 4 7.25 29 29
.........................................................AGAGGTAGTAGGTTGCATAGTTAA.......................................................................................................... 24 2 1 7.00 7 7
.........................................................AGAGGTAGTAGGTTGCAT................................................................................................................ 18 0 1 7.00 7 7
.........................................................AGAGGTAGTAGGTTGCATAGTTTT.......................................................................................................... 24 0 1 7.00 7 7
.........................................................AGAGGTAGTAGGTTGCATAGTTG........................................................................................................... 23 1 1 7.00 7 7
.........................................................AGAGGTAGTAGGTTGCA................................................................................................................. 17 0 1 7.00 7 7
.........................................................AGAGGTAGTAGGTTGCGTAGTT............................................................................................................ 22 1 1 5.00 5 5
.........................................................AGAGGTAGTGGGTTGCATAGTT............................................................................................................ 22 1 1 5.00 5 5
.........................................................CGAGGTAGTAGGTTGCATAG.............................................................................................................. 20 1 1 5.00 5 5
.........................................................CGAGGTAGTAGGTTGCATAGTTA........................................................................................................... 23 2 1 4.00 4 4
...............................................................................................................CTATACGACCTGCTGCCTTTCG...................................................... 22 1 1 4.00 4 4
.........................................................AGAGGTCGTAGGTTGCATAGTT............................................................................................................ 22 1 1 4.00 4 4
.........................................................AGAGGTAGTGGGTTGCATAGT............................................................................................................. 21 1 1 4.00 4 4
.........................................................AGAGGTAGTAGGTTGCATACTT............................................................................................................ 22 1 1 4.00 4 4
................................................................................................................TATACGACCTGCTGCCTTTC....................................................... 20 0 1 4.00 4 4
.........................................................AGAGGTAGTAGGTTGCATA............................................................................................................... 19 0 1 4.00 4 4
.........................................................CGAGGTAGTAGGTTGCATAGTTT........................................................................................................... 23 1 1 4.00 4 4
.........................................................AGAGGTAGTAGGTTGCATAGTAT........................................................................................................... 23 1 1 4.00 4 4
...............................................................................................................CTATACGACCTGCTGCGTTTCT...................................................... 22 1 1 3.00 3 3
.........................................................CGAGGTAGTAGGTTGCGTAGTT............................................................................................................ 22 2 1 3.00 3 3
.........................................................AGAGGTAGTAGGATGCATAGTT............................................................................................................ 22 1 1 3.00 3 3
...............................................................................................................CTATACGACCTGCTGCCTTTCAA..................................................... 23 2 1 3.00 3 3
.........................................................GGAGGTAGTAGGTTGCATAGTT............................................................................................................ 22 1 1 3.00 3 3
.........................................................AGAGGTAGTAGGTTGCATATTT............................................................................................................ 22 1 1 3.00 3 3
...............................................................................................................CTATACGACCTGCTGCCTTTCTT..................................................... 23 0 1 2.00 2 2
...............................................................................................................CTATACGACCTGCTGCCTTTCTAT.................................................... 24 2 1 2.00 2 2
.........................................................AGAGGTAGTAGGGTGCATAGT............................................................................................................. 21 1 1 2.00 2 2
...............................................................................................................CTATACGACCTGTTGCCTTTC....................................................... 21 1 1 2.00 2 2
..........................................................GAGGTAGTAGGTTGCATAGTT............................................................................................................ 21 0 1 2.00 2 2
.........................................................AGAGGTAGTAGATTGCATAGT............................................................................................................. 21 1 1 2.00 2 2
.........................................................AGAGGTAGTAGGTTGCCTAG.............................................................................................................. 20 1 1 2.00 2 2
...............................................................................................................CTATACGACCTGCTGCCT.......................................................... 18 0 1 2.00 2 2
.........................................................AGAGGGAGTAGGTTGCATAGTT............................................................................................................ 22 1 1 2.00 2 2
.........................................................AGAGGTAGTAGGTTGCGTAGT............................................................................................................. 21 1 1 2.00 2 2
...............................................................................................................CTATACGACCTGCTGCCTTGCT...................................................... 22 1 1 2.00 2 2
.........................................................TGAGGTAGTAGGTTGCATAGTT............................................................................................................ 22 1 4 2.00 8 8
...............................................................................................................CTATACGACCTGCTGCCTTTCTA..................................................... 23 1 1 2.00 2 2
.........................................................CGAGGTAGTAGGATGCATAGTT............................................................................................................ 22 2 1 2.00 2 2
.........................................................AGAGGTAGTAGGTTGCATAGG............................................................................................................. 21 1 1 2.00 2 2
.........................................................AGAGGTAGTAGGTTGTATAGT............................................................................................................. 21 1 4 2.00 8 8
.........................................................AGAGGTAGTAGGTTGCATAGAA............................................................................................................ 22 2 2 1.50 3 3
.........................................................AGAGGAAGTAGGTTGCATAGTT............................................................................................................ 22 1 2 1.50 3 3
.........................................................AGAGGTAGTAGGTTGCATAGTAA........................................................................................................... 23 2 2 1.50 3 3
.........................................................AGAGGTAGTAGCTTGCATAGT............................................................................................................. 21 1 1 1.00 1 1
................................................................................................................TATACGACCTGCTGCCTTTCAA..................................................... 22 2 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCTTAGTTT........................................................................................................... 23 1 1 1.00 1 1
........................................................CAGAGGTAGTAGGTTGCATAGTT............................................................................................................ 23 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATT............................................................................................................... 19 1 1 1.00 1 1
...............................................................................................................CTATACGACCTGCTGCCTTTAA...................................................... 22 2 1 1.00 1 1
...............................................................................................................CTATACGACGTGCTGCCTTACT...................................................... 22 2 1 1.00 1 1
.........................................................AGAGGTAGTGGGTTGCATAGTTT........................................................................................................... 23 1 1 1.00 1 1
...............................................................................................................CTATACGACCTGCTGCCTTTT....................................................... 21 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTGC........................................................................................................... 23 2 1 1.00 1 1
.........................................................AGAGGTGGTGGGTTGCATAGTT............................................................................................................ 22 2 2 1.00 2 2
.........................................................CGAGGTAGTAGGTTGCATAGTTTT.......................................................................................................... 24 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTAG........................................................................................................... 23 2 1 1.00 1 1
.........................................................AGAGGTGGTCGGTTGCATAGT............................................................................................................. 21 2 1 1.00 1 1
.........................................................AGAGGTAGTAGGATGCATAGT............................................................................................................. 21 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTGT........................................................................................................... 23 1 1 1.00 1 1
.........................................................AGAGGTGGTAGGTTGCATAGTTA........................................................................................................... 23 2 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAT.............................................................................................................. 20 1 1 1.00 1 1
...............................................................................................................CTATACGACCTGCTGCCTTACA...................................................... 22 2 1 1.00 1 1
................................................................................................................TATACGACCTGGTGCCTTTCA...................................................... 21 2 1 1.00 1 1
.........................................................AGAGGTAGTGGGTTGCATATTT............................................................................................................ 22 2 1 1.00 1 1
.........................................................AGAGGTGGTCGGTTGCATAGTT............................................................................................................ 22 2 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTTAG.......................................................................................................... 24 2 1 1.00 1 1
..................................................................................................................................................TTCCACGGTCACCTGTTTCCTCGCTGCCT............ 29 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTTAT.......................................................................................................... 24 1 1 1.00 1 1
.........................................................AGAGGTAGTAGATTGCATAGTT............................................................................................................ 22 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGCTGCATAGTT............................................................................................................ 22 1 1 1.00 1 1
.........................................................CGAGGTAGTAGGTTGCATAGTC............................................................................................................ 22 2 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAAT............................................................................................................. 21 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGTATAGTTT........................................................................................................... 23 1 4 1.00 4 4
...............................................................................................................CTATACGACCTGCTGCCTTTCAT..................................................... 23 1 1 1.00 1 1
................................................................................................................TATACGACCTGCTGCCTTTGT...................................................... 21 1 1 1.00 1 1
...............................................................................................................CTATACGACCTGGTGCCTTTCT...................................................... 22 1 1 1.00 1 1
...............................................................................................................CTATACGACCTGCTGCCTTG........................................................ 20 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTTTA.......................................................................................................... 24 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGATGCATAGTA............................................................................................................ 22 2 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGGT............................................................................................................ 22 1 1 1.00 1 1
.........................................................AGAGGCAGTAGGTTGCATAGTT............................................................................................................ 22 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTCGCATAGT............................................................................................................. 21 1 1 1.00 1 1
.........................................................CGAGGTAGTAGGGTGCATAGTT............................................................................................................ 22 2 1 1.00 1 1
..............................................................TAGTAGGTTGCATAGTT............................................................................................................ 17 0 1 1.00 1 1
.........................................................AGAGGTGGTAGGTTGCATAGTT............................................................................................................ 22 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTTGT.......................................................................................................... 24 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATACTTT........................................................................................................... 23 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTCA........................................................................................................... 23 2 2 1.00 2 2
.........................................................CGAGGTAGTAGGTTGCGTAGT............................................................................................................. 21 2 1 1.00 1 1
...............................................................................................................CTATACGACCTGCTGCCTTTA....................................................... 21 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAATTT........................................................................................................... 23 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGAATAGTT............................................................................................................ 22 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCCTAGTT............................................................................................................ 22 1 1 1.00 1 1
...............................................................................................................CTATACGACCTGCTGCCTTTCAG..................................................... 23 2 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGC............................................................................................................. 21 1 1 1.00 1 1
.........................................................AAAGGTAGTAGGTTGCATAGTTT........................................................................................................... 23 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAATAT........................................................................................................... 23 2 1 1.00 1 1
...............................................................................................................CTATGCGACCTGCTGCCTTTCC...................................................... 22 2 1 1.00 1 1
...............................................................................................................CTATACGACCTGCTGCCTTTCCA..................................................... 23 2 1 1.00 1 1
...............................................................................................................CTATACGACCAGCTGCCTTTCT...................................................... 22 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTC............................................................................................................ 22 1 1 1.00 1 1
................................................................................................................TATACGACCTGCTGCCTTTAT...................................................... 21 1 1 1.00 1 1
................................................................................................................TATACGACCTGCTGCCGTTCT...................................................... 21 1 1 1.00 1 1
.........................................................AGAGGTAGTAAGTTGCATAGTT............................................................................................................ 22 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAAA............................................................................................................. 21 2 2 1.00 2 2
.........................................................AGAGGTAGTAGGTTGCATAGTTC........................................................................................................... 23 1 1 1.00 1 1
.........................................................AGAAGTAGTAGGTTGCATAGTTA........................................................................................................... 23 2 1 1.00 1 1
.........................................................AGAGGTAGTTGGTTGCATAGTT............................................................................................................ 22 1 1 1.00 1 1
...............................................................................................................CTATACGACCTGCTGCCTTAC....................................................... 21 1 1 1.00 1 1
.........................................................AGAGGTAGTGGGTTGCATAATT............................................................................................................ 22 2 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAA.............................................................................................................. 20 1 1 1.00 1 1
...............................................................................................................ATATACGACCTGCTGCCTTTCT...................................................... 22 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTTTAA......................................................................................................... 25 1 1 1.00 1 1
.........................................................AGAGGTAGTAGGTTG................................................................................................................... 15 0 3 0.67 2 2
...............................................................................................................CTATACGACCTACTGCCTTCCT...................................................... 22 2 2 0.50 1 1
.........................................................AGAGGTAGTAGGTTGCGTAGA............................................................................................................. 21 2 2 0.50 1 1
.........................................................TGAGGTAGTAGGTTGCATAG.............................................................................................................. 20 1 4 0.50 2 2
...............................................................................................................CTATACGACCAGCTGCCTTTCA...................................................... 22 2 2 0.50 1 1
...............................................................................................................CTATACGACGTACTGCCTTGCT...................................................... 22 3 2 0.50 1 1
.........................................................AGAGGTCGTGGGTTGCATAGT............................................................................................................. 21 2 2 0.50 1 1
...............................................................................................................CTATACGACCTGCTGCCTTTCAAT.................................................... 24 3 2 0.50 1 1
.........................................................AGAGGTGGTAGGTTGCATACT............................................................................................................. 21 2 2 0.50 1 1
.........................................................AGAGGTCGTCGGTTGCATACTT............................................................................................................ 22 3 2 0.50 1 1
.........................................................AGAGGTATTAGGTTGCATAGT............................................................................................................. 21 1 2 0.50 1 1
.........................................................CGATGTAGTAGGTTGCATAG.............................................................................................................. 20 2 2 0.50 1 1
.........................................................AGAGGTGGTTGGTTGCATAGTT............................................................................................................ 22 2 3 0.33 1 1
.........................................................CGAGGTAGTAGGTTGCATAGTTGA.......................................................................................................... 24 3 3 0.33 1 1
...............................................................................................................CTATGCGACCTGCTGCCTTTCAA..................................................... 23 3 3 0.33 1 1
.........................................................AGAGGTGGTAGGTTGCATAATT............................................................................................................ 22 2 3 0.33 1 1
.........................................................AGAGGTAGTAGGTTGCAGA............................................................................................................... 19 1 4 0.25 1 1
.........................................................TGAGGTAGTAGGTTGCAT................................................................................................................ 18 1 8 0.25 2 2
.........................................................TGAGGTAGTAGGTTGCATAGT............................................................................................................. 21 1 4 0.25 1 1
.........................................................AGAGGTAGTAGGTTGCATAGTAAA.......................................................................................................... 24 3 5 0.20 1 1
.........................................................AGAGGTAGTAGGTTGTATAGTA............................................................................................................ 22 2 5 0.20 1 1
.........................................................AGAGGTAGTAGGTTGTATAGTTG........................................................................................................... 23 2 6 0.17 1 1
.........................................................AGAGGTAGTAGGTTGCATGA.............................................................................................................. 20 2 8 0.13 1 1
.........................................................AGAGGTAGTAGGTTGTAT................................................................................................................ 18 1 11 0.09 1 1
.........................................................AGAGGTCGTGGGTTGCATATTT............................................................................................................ 22 3 11 0.09 1 1
.........................................................TGAGGTAGTAGGTTGCA................................................................................................................. 17 1 11 0.09 1 1
.........................................................AGAGGTGGTGGGTTGCATAG.............................................................................................................. 20 2 12 0.08 1 1
.........................................................AGAGGTAGTGGGTTGCATAATA............................................................................................................ 22 3 13 0.08 1 1
.........................................................AGAGGTAGTAGGTTGCAGAA.............................................................................................................. 20 2 20 0.05 1 1
.........................................................AGAGGTAGTAGGTTGCATTAA............................................................................................................. 21 3 20 0.05 1 1
.........................................................AGAGGTAGTAGGTTGCATTCA............................................................................................................. 21 3 20 0.05 1 1
.........................................................AGAGGTAGTAGGTTGCAAT............................................................................................................... 19 2 20 0.05 1 1

Anti-sense strand reads

TAAACTTCACGTAGACGGTTCATCTTCTGGCCGTTCTTTTTTTTACCCAAGGATCCTTCTCCATCATCCAACGTATCAAAATCCCGTCCCTAAAACGGGTGTTCCTCTATTGATATGCTGGACGACGGAAAGAATCCCGGACTAATAAGGTGCCAGTGGACAAAGGAACGACGGAACGAAACCACAT

***************************************..(((((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).))))))))))))))))))))))))))......****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:52 AM