ID:

dya_987

 Coordinate:

3R:9391631-9391781 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.5 -11.3 -11.2

Flybase annnotation

exon [dyak_GLEANR_8434:3]; CDS [Dyak\GE24770-cds]; intron [Dyak\GE24770-in]

Repeatable elements

NameClassFamilyStrand
Transib-N1_DMDNATransib-
mature
star
  1. 3L:933920-933946 +
  2. 3L:6291145-6291171 +
  3. 2L:16828267-16828293 +
  4. 2L:19367638-19367664 +
  5. 2R:3079355-3079381 +
  6. 2R:8978780-8978806 +
  7. X:3391307-3391333 +
  8. 3R:6699962-6699988 +
  9. 3R:6835976-6836002 +
  10. v2_chrUn_1151:263-289 +
  11. v2_chrUn_5053:4947-4973 +
  12. v2_chrUn_3250:1142-1168 +
  13. v2_chrUn_5709:280959-280985 +
  14. v2_chrUn_5744:1026-1052 +
  15. chr2h:498160-498186 +
  16. v2_chr2L_random_010:493599-493625 +
  17. v2_chr2L_random_028:1698161-1698187 +
  18. v2_chr2h_random_007:28478-28504 +
  19. v2_chrX_random_047:14966-14992 +
  20. v2_chrUn_531:1883-1909 +
  21. 3L:13878632-13878658 -
  22. 2L:1736032-1736058 -
  23. 2L:10021524-10021550 -
  24. 2L:14470665-14470691 -
  25. 2L:20907969-20907995 -
  26. 2R:2503897-2503923 -
  27. 2R:16559282-16559308 -
  28. 2R:16620942-16620968 -
  29. 2R:18214238-18214264 -
  30. 2R:18244098-18244124 -
  31. X:19117327-19117353 -
  32. X:21139657-21139683 -
  33. 3R:8235984-8236010 -
  34. dya_987  3R:9391634-9391660 -
  35. 3R:12291703-12291729 -
  36. 3R:12888519-12888545 -
  37. v2_chrUn_2443:72-98 -
  38. v2_chrUn_6287:579-605 -
  39. v2_chrUn_6520:2516-2542 -
  40. v2_chrUn_005:13145-13171 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTAACGAAAGAAAAACTTAATGTTGCAGATAGTTATTTTGTGTAAGCGCAACAGCTGTTTTAAACAGCTGATTTCTTTGTTGTGGCGCCATCTATTAAAATTTCTACTACGCAGCACTAAAGATTGGTCAATTATGAATGCGTACACTAAATATTATTGTAATATTCCGACTTTCAGAAAATGGGTTTTGGCCAGAAAAAGGGGTCAAATTTCCCATAGTGCGCCGCATGTTCAAATGCCGATGCAGATGC
**************************************************************************************************.....(((..((.((...((((((.((((...(((((((...................)))))))...)))))))).))....)).))..))).......***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 V120
male body		 V046
embryo
 GSM1528802
follicle cells
............................................................................................................................................................................................................TCAAATTTCCCATAGTGCGCCGCATG..................... 26 0 1 2.00 2 2 0 0 0 0
............................................................................................................................................................................................................TCAAATTTCCCATAGTGCGCCGCA....................... 24 0 1 2.00 2 1 1 0 0 0
..........................................TAAGCGCAACAGCTGTTTTAAACAGC....................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
..................AATGTTGCAGATAGTTATTTTGTG................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................TCAAATTTGCCATAGTGCGCCGCATG..................... 26 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................TAGTGCGCCGCATGTTCAAATGCCGATG....... 28 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................................................................CAAATTTCCCATAGTGCGCCGCATGT.................... 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................................TTCTACTACGCAGCACTAAAGATTGGAC.......................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0
.................TAATGTTGCAGATAGTTATTTCGTG................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0
...............................................................................................................................................................................................................AATTTCCCATAGTGCGCCGC........................ 20 0 1 1.00 1 0 0 1 0 0
...........................................................................................................................................................................................................CTCAAATTTCCCATAGTGCGCCGCATG..................... 27 1 1 1.00 1 1 0 0 0 0
..................................................................................................AATTTCTACTACGCAGCACTAAAG................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................TTTCCCATAGTGCGCCGCATGTTCAAA............... 27 0 1 1.00 1 0 0 1 0 0
.....................................................................................................................TAAAGATTGGTCAATTATGAATGCG............................................................................................................. 25 0 20 0.30 6 6 0 0 0 0
...........................................................................................................................................................................TTTCAGAAAATGGGTTTTGGCCAGAAA..................................................... 27 0 20 0.20 4 0 0 0 0 4
....................................................................................................................................................................................................AAAAGGGGTCAAATTTCCCATAGTGCGC........................... 28 0 6 0.17 1 0 0 1 0 0
............................................................................................................................TGGTCAATTATGAATGCGTACAC........................................................................................................ 23 0 20 0.10 2 2 0 0 0 0
.................................................................ATCTGATTTCTTTGTTGTGGCGCC.................................................................................................................................................................. 24 1 20 0.10 2 0 2 0 0 0
.................................................................AGCTGATTTCTTTGTTGTGGCGCCA................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
............................................................TAAACAGCTGGTTTCTTTGTT.......................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................TTTCAGAAAATGGGTTTTGGCC.......................................................... 22 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................GACTTTCAGAAAATGGGTTTTGGCC.......................................................... 25 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

AATTGCTTTCTTTTTGAATTACAACGTCTATCAATAAAACACATTCGCGTTGTCGACAAAATTTGTCGACTAAAGAAACAACACCGCGGTAGATAATTTTAAAGATGATGCGTCGTGATTTCTAACCAGTTAATACTTACGCATGTGATTTATAATAACATTATAAGGCTGAAAGTCTTTTACCCAAAACCGGTCTTTTTCCCCAGTTTAAAGGGTATCACGCGGCGTACAAGTTTACGGCTACGTCTACG
*****************************************************.....(((..((.((...((((((.((((...(((((((...................)))))))...)))))))).))....)).))..))).......************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 V046
embryo
 GSM1528802
follicle cells		 V120
male body
...................................................................................CCGCGGTAGATAATTTTAAAGATGAT.............................................................................................................................................. 26 0 1 4.00 4 0 4 0 0 0
......................................................................................................AGATGATGCGTCGTGATTTCTAACC............................................................................................................................ 25 0 1 4.00 4 3 1 0 0 0
....................................................................................................AAAGATGATGCGTCGTGATTTCTAACC............................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0
......................................................................................................AGATGATGCATCGTGATTTCTAACC............................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0
.........................................................................................................TGATGCGTCGTGATTTCTAACC............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
...............................................................................................ATTTTAAAGATGATGCGTCGTGATT................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0
.............................................................................................................GCGTCGTGATTTCTAACCAGTTAAT..................................................................................................................... 25 0 20 1.00 20 15 2 1 0 2
............................................TCGCGTTGTCGACAAAATTTGTCGA...................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.................................................................................................TTTAAAGATGATGCGTAGTGATTTC................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
..TTGCTTTCTTTTTGAATTACAACGT................................................................................................................................................................................................................................ 25 0 20 0.35 7 0 0 0 7 0
..............................................................................................................CGTCGTGATTTCTAACCAGTTAAT..................................................................................................................... 24 0 20 0.25 5 2 2 0 1 0
.......................................................ACAAAATTTGTCGACTAAAGAAACAAC......................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
................................................................................................................TCGTGATTTCTAACCAGTTAAT..................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0
.....................................................CGACAAAATTTGTCGACTAAAGAAAC............................................................................................................................................................................ 26 0 20 0.10 2 0 2 0 0 0
........................................................................................................................................................................................................CCCCAGTTTAAAGGGTATCACG............................. 22 0 20 0.10 2 0 2 0 0 0
........................................................CAAAATTTGTCGACTAAAGAAACAAC......................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
..............................................................................................................CGTCGTGATTTCTAACCAGTTAATA.................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
.............................................................................................................................................................................................CCGGTCTTTTTCCCCAGTTTAAAGGGTA.................................. 28 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................ACCCAAAACCGGTCTTTTTCCCCAGTTT.......................................... 28 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................AATAACATTATAAGGCTGAAAGTCT......................................................................... 25 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................TAATAACATTATAAGGCTGAAAGTCTT........................................................................ 27 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................CCAGTTAATACTTACGCATGTGATT..................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................ATATAGTTAATACTTACGCATGTGAT...................................................................................................... 26 3 20 0.05 1 0 0 1 0 0
...........................................................................................................................................................TAACATTATAAGGCTGAAAGTCTT........................................................................ 24 0 20 0.05 1 1 0 0 0 0
................................................................................ACACCGCGGTAGATAATTTTAAAGA.................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................TATAATAACATTATAAGGCTGAAAGTCTT........................................................................ 29 0 20 0.05 1 1 0 0 0 0
.............................................................................................................GCGTCGTGATTTCTAACCAGTTAA...................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................CTAACCAGTTAATACTTACGCATGTGATT..................................................................................................... 29 0 20 0.05 1 1 0 0 0 0
...........................................................................................................ATGCGTCGTGATTTCTAACCAGTTAAT..................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
................................................................GTCGACTAAAGAAACAACACCGC.................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................CCAAAACCGGTCTTTTTCCCCAGTTT.......................................... 26 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................TTATAATAACATTATAAGGCTGAAAGTCT......................................................................... 29 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................CCGGTCTTTTTCCCCAGGTTAAAGGG.................................... 26 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................ATAACATTATAAGGCTGAAAGTCTT........................................................................ 25 0 20 0.05 1 1 0 0 0 0
..............................................................................CAACACCGCGGTAGATAATTTTAAAGAT................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0
.........................................................................AGAAACAACACCGCGGTAGATAATTT........................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................CCGGTCTTTTTCCCCAGTTTAAAGGG.................................... 26 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................AATAACATTATAAGGCTGAAAGTCTT........................................................................ 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................................GTCGTGATTTCTAACCAGTTAAT..................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3R:9391581-9391831 - dya_987 TTAACG---------AAA----GAAAAACTTA---A--------TGTTGCAGAT---------AGTTATTTTGTGTAAGCGCAACAGCTGTTTTAAACAGCTGATTTCTTTGTTG-TGGCGCCATCTATTAAAATTTCTACTACGCAGCACTAAAGATTGGTCAATTATGAATGCGTA-CAC-------TAAATATTATTGTAATATTCCG-ACTTTCAGAAAATGGGTTTTGGCCAGAAAAAGGGGTCAAATTTCCCATAGTGCGCCGC-ATGTTCAAATG-------CCGATGCAGATGC
droEre2 scaffold_4845:2200746-2200959 + TTAACG---------GGG----G-AAAACTTA---A--------TGTTGCAGAT---------T---GTTTTTTGTACGCGTAACAGCTGTTTTAAACTGCTGATTTCTTTGTTG-TGATGCCATCTATTTTAATACCTGGTATGCAGCCCTATAGATTTGTCTATTATGAATGCGTA-CAT-------TTAATATTAT----ATATTCGG-ACTTTCAGAAAAAGTGTTTTTGCCAGAAAAAGTGGCTAAATTTCGCACAGTGC-------------------------------------
droSec2 scaffold_60:125278-125490 + GTAGGG---------GG-----GAAAAACTTA---A--------CGTTGCAGAT---------AAATATT-TTTGTACGCGCAACATCTGTTTTTAACAGCTGATTTCTTTGTTG-TTGCGCCATCCATATTAGTTTTTGGTATGCAGAACTAAACATGGGTCAATTATGAATGCATG-CAT-------T-------TTATTATTCGACTT-ACTTTCAGAAAATGGGTTGTGGTCAGAAAAAGTGGGTACATTCCCCATAGTGC-------------------------------------
droSim2 node_85442:23-267 - GTAACG---------AAA----GAAAAACTTA---A--------TGTTGCAGAT---------TGTTGTTTTGTGTACGCGCAACAGCTGTTTTTAACAGCTGATTTCTTTGTTG-TGGCGCCATCTATTAAAATTTCTGGTATGCAGCACTAAAGATTGGTCAATTATGAATGCGTA-CAC-------TAAATATTATTGTAATATTCCG-ACTTTCAGAAAATGGGTTTTGGCCAGAAAAAGGGGTCAAATTTCCCATAGTGCAACAC-C------AATA-------CCAACACCAACAC
dm3 chrX:22197306-22197534 + GTAAGG---------GG-----GAAAAACTTA---A--------CGTTGCAGAT---------AAATGTT-TTTGTGCGTGCAATAGCTGATTTTAACATCTGATTTCTTTGCCG-TGGTGCCATATTAGTTTATTTCTGGTATGCAGAAATAAACATTGCTCAATTATGAATGCATG-CATTTACA--ATAATATTATATTAATCTACCG-ACTTTCATAAAATTGGATTTGGCCATAAAAAGTGGGTAATTTTCCAATAGTGCACCG---------------------------------
droEug1 scf7180000409676:409759-409984 - AAAATG---------CGC----TTGAATCCCA---A--------TATTGCCACT---------GCTTGTATAGATAAATAGCAACAGCTGTTTTCATCAGCTGATTTCTTCGCAG-TGGCGCCATCTATTAAAATTTCTGTTATGCAACACTTAAAATTAATCTAATGTGAATACAATTCAG-------TTAAAATTATTTTAATTTTTTC-ACTTTCAAAAAATGGTTTTTGGCCAGAAAAAGTGGCTAAATTTCCTATAGTGCATC----------------------------------
droBia1 scf7180000302274:31127-31352 + AACATT---------TAA----GAA-TAATTGGTGGTTTAC------TACAGCT-------------GCC-ACCTCGTTAAAAAAAACAGACTTTAACAGCTGATAACTTAACGG-TAGTGCAGTCTGTTAAACTTTTATTTTAGTATCATTGGAGACTGATGTTATCTTAATCCATAAAAA-A---AGTCAAAATCAAT---TTCAAACC-ACTTTTAAAAAATGGGTTTTGGCCAA--AAAGTGGTAAAATTTCCCATAGTGCATCGC-A------------------------------
droTak1 scf7180000415302:11504-11747 + TTAAAG---------ATTGCAAAGAAAACTTA---A--------TATTGCAGGT---------GCCTGTGCTTAGCAAATGCAACAGCTGTGTTTATCAGCTGATTTCTTTGTTG-CGGCGCTCTCTATAATAATTTCTGGTATGCAACACTAAAGATTTGTCTATTGTGAATGCATTACAA-------CAAAACTTTTTTGAATTTTCCG-ACTTTCAGAAAATGGGTTTTGGCCAAAAAAAGTGGTCAAATTCCCCATAGGGCGCTGC-TCGCTCACG-------------------TAC
droEle1 scf7180000490719:47965-48220 - TTAGTGTTAAATTTGGAA----GAAAAATTTA---C------GACTTTACAGCG---------CT-CGCTTTAAGTTGCACAAACAGCTGACTTTGACAGCGGATAGCTTAACAG-TAATGCGCTCTGTTAAAATTTTGTGTTTGCAACATTTAAGATTAGGATTATTTCTATCCATCGCGA-------TTAAAAAAAAAT--ATTTAACG-ACTTTTAAAAAATGGGTTTTGGGCCAAAAATGTGGTCGTTGGCCCCATAGTGCATCCC-ATTG----AGT-------TGCATACTGATGC
droRho1 scf7180000779410:360588-360820 - TGAAAA---------AAT----TGCAAACTTA---G--------CGCTG------------------GTGCTTTT-GGATGCAACAGCTGACTTT-ACAGCTGTTATGCTAACATATGCTGTTAAGTATTAACATTTTGAGTATGAGGCATAACAGTTTGATGTTCTGTTAATGCACTCCCA-------TT-TTTTTTTTTTAATTAGAGC-ACTTTTAAAAAATGACTAAATGCCACATAAAGTGGTCAAAAACCCCATAGTGCATGGT-CGGGT-----A-------ACCATACAAA---
droFic1 scf7180000453901:534962-535190 - TGAACA---------AAT----ACAAAAGAT--------------TTTACAGCA---------T---GTGCTTCTGTTAAAAAACAGCTGACTTTGACAGCTGATATCTTAACAG-TGGTGCGGTCTGTTAAAATTTTAAGTACGTAACATTTTACTTCCATGTTATCTTAACTCATTGCGA-------TTAAAAAAAATT--TTTTAACG-TCTTTTAAAAAATGGGTTTCGGCCACCAAATGTGGGCAAATGCCCCATAGTGCAGCGT-ATTAA----------------------AATG
droKik1 scf7180000302473:942705-942953 - CTAATT---------TAA----GAATTG--TATTAA--------TATTCGCATTTTAAGTCTTGC-CGTTCGCTCGTGTGCAATCAGCTGTCTTTGGAAGACTCTTGTGCGAGAG-TGGCGCCACCTGGGAAGATTTCGAGAATGGTACGTTGATGGTCACTCTATTTCTAATTAATAGAGA-------CCAAAATAACTTTATTTGGTAA-ACTTTCAAAAAATGGGTTTTGGCCAAATAAAGTGGTCGACTGGACCATAGTGCAATGT-TTGATTACG-------------------GAT
droAna3 scaffold_13089:213491-213750 + TGAACC---------TGA----GAAAAAATTT-------TTCGCTTTTGCAACT---------TGCTTTT-TTATTAGGAAAAACAGCTGACTTCAACAGCTGATTGTCAATTAG-TGGCGCCATCTATTACGTTTACATTTATGAAACAGTAAAGATTGGTCATTTCTTTATACATTCCAA-------TTAAAAAAGGAA--TATTTTTA-ACTTTTAAAAAATGGGTTTTGGCCAGAAAAAGTGGTCAAATGTCCCATAGGGCGATGC-ATGCACTAGAACCTTGTTCCGATGCAATTTC
droBip1 scf7180000396264:42100-42335 - TTAAC-------------------AAAACTTA---A--------TATTTTAATA---------GCCTGTGCTTTGCAATTGCAACAGCTGTGTTTGTCAGCTGATTCCTTTGTTG-TGCCGCCCTCTATCAAATTTTTTGTTATGCACCACTGAAGATTGGTGAATTTGGAATGCGTTACAC-------TAAAAAATATTTATATTTTAAG-ACTTTCAGAAAATGGGGTTTTGTCACAAAAACTGGTCAAATTCCCCATAGTGCACCGC-TTCGT-------------CCGAG----GCAC
dp5 2:11449605-11449846 + GAGATA---------TCT----AAAGTGGTTATTAATTTGCCAC--------TT-TTTCCCTTCA-CGTGCTTTACTATAAAAACAGTTGGGTTGCACAGCTGATTTTGCAAATG-TGGCGCCATCTATGGAAATTTCTGGTACGCAGATTTAATGGTCGATCTTTTTCTAATGCGGAGCGA-------TCAAAACCAGGTTTCTGTTTTG-ACTTTGAAAAATTAGGTTTTGGCCAACAAAAGTGGTCGTTCGGACCATAGTGGGGTGT-ATGT---------------------------
droPer2 scaffold_58:212806-213068 - GAGATA---------TCT----AAAGTAGTTATTAATTTGCCAC--------TT-TTTCCCTTCA-CGTGCTTTACTATAAAAACAGTTGGGTTGCACAGCTGATTTTGCGAATG-TGGCGCCATCTATGGAAATTTCTGGTACGCAGATTTAATGGTCGATCTTTTTCTAATGCAGAGCGA-------TCAAAACCAGGTTTCAGTTTTG-ACTTTGAAAAATTAGGTTTTGGCCAACAAAAGTGGTCGTTCGGACCATAGTGCGACGGGGCGCACGCACA-------CATACACAGACAC
droWil2 scf2_1100000004943:4620608-4620618 - GAGGGA---------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAC
droVir3 scaffold_12855:4862683-4862706 - GCGGTT---------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCAAATG-------CGGA-----ATGC
droMoj3 scaffold_6496:22725474-22725715 + ATAAAG---------TTT----TACAAACTTG---A--------TAAT-------------------GTGCGTGTCATGCATAACAGCTCTGTTTAACAGCAGTTTAGTTAGCAGATCGCG-CCTCTGTTGAAATTCTGAGTATGTAACATTTACATATAGGCTATTCTTAATGGATTGGCA-------TTAAAATTTTGTAAATTTTTTCAACTTGGAAA-TAAGACTTTTTTCCAAA-AAATCGGGCTTTTGACCCATAGTGCACAGGCACACACAGACA-------CAGAGACACACAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TTAACG---------AAA----GAAAAACTTA---A--------TGTTGCAGAT---------AGTTATTTTGTGTAAGCGCAACAGCTGTTTTAAACAGCTGATTTCTTTGTTG-TGGCGCCATCTATTAAAATTTCTACTACGCAGCACTAAAGATTGGTCAATTATGAATGCGTA-CAC-------TAAATATTATTGTAATATTCCG-ACTTTCAGAAAATGGGTTTTGGCCAGAAAAAGGGGTCAAATTTCCCATAGTGCGCCGC-ATGTTCAAATG-------CCGATGCAGATGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................TCAAATTTCCCATAGTGCGCCGC-ATG............................2612.00202000000000
.......................................................................................................................................................................................................................................................TCAAATTTCCCATAGTGCGCCGC-A..............................2412.00201100000000
...........................................................................TAAGCGCAACAGCTGTTTTAAACAGC.........................................................................................................................................................................................................2611.00100100000000
...............................A---A--------TGTTGCAGAT---------AGTTATTTTGTG...................................................................................................................................................................................................................................2411.00101000000000
...................................................................................................................................................................................................................................................................TAGTGCGCCGC-ATGTTCAAATG-------CCGATG.......2811.00100000010000
........................................................................................................................................................................................................................................................CAAATTTCCCATAGTGCGCCGC-ATGT...........................2611.00101000000000
..........................................................................................................................................................................................................................................................AATTTCCCATAGTGCGCCGC-...............................2011.00100000010000
....................................................................................................................................AATTTCTACTACGCAGCACTAAAG..................................................................................................................................................2411.00101000000000
............................................................................................................................................................................................................................................................TTTCCCATAGTGCGCCGC-ATGTTCAAA......................2711.00100000010000
.......................................................................................................................................................TAAAGATTGGTCAATTATGAATGCG..............................................................................................................................25200.30606000000000
......................................................................................................................................................................................................................TTTCAGAAAATGGGTTTTGGCCAGAAA.............................................................27200.20400000000004
...............................................................................................................................................................................................................................................AAAAGGGGTCAAATTTCCCATAGTGCGC...................................2860.17100000010000
..............................................................................................................................................................TGGTCAATTATGAATGCGTA-CAC-------.................................................................................................................23200.10202000000000
..................................................................................................AGCTGATTTCTTTGTTG-TGGCGCCA..................................................................................................................................................................................25200.05100100000000
......................................................................................................................................................................................................................TTTCAGAAAATGGGTTTTGGCC..................................................................22200.05100100000000
..................................................................................................................................................................................................................G-ACTTTCAGAAAATGGGTTTTGGCC..................................................................25200.05100000000001
droEre2
TTAACG---------GGG----G-AAAACTTA---A--------TGTTGCAGAT---------T---GTTTTTTGTACGCGTAACAGCTGTTTTAAACTGCTGATTTCTTTGTTG-TGATGCCATCTATTTTAATACCTGGTATGCAGCCCTATAGATTTGTCTATTATGAATGCGTA-CAT-------TTAATATTAT----ATATTCGG-ACTTTCAGAAAAAGTGTTTTTGCCAGAAAAAGTGGCTAAATTTCGCACAGTGC-------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droSec2
GTAGGG---------GG-----GAAAAACTTA---A--------CGTTGCAGAT---------AAATATT-TTTGTACGCGCAACATCTGTTTTTAACAGCTGATTTCTTTGTTG-TTGCGCCATCCATATTAGTTTTTGGTATGCAGAACTAAACATGGGTCAATTATGAATGCATG-CAT-------T-------TTATTATTCGACTT-ACTTTCAGAAAATGGGTTGTGGTCAGAAAAAGTGGGTACATTCCCCATAGTGC-------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................TTGTTG-TTGCGCCATCCATA............................................................................................................................................................................2050.2010010
..................................................................................................................................................................................................................T-ACTTTCAGAAAATGGGTTGTGG....................................................................2370.1410001
droSim2
GTAACG---------AAA----GAAAAACTTA---A--------TGTTGCAGAT---------TGTTGTTTTGTGTACGCGCAACAGCTGTTTTTAACAGCTGATTTCTTTGTTG-TGGCGCCATCTATTAAAATTTCTGGTATGCAGCACTAAAGATTGGTCAATTATGAATGCGTA-CAC-------TAAATATTATTGTAATATTCCG-ACTTTCAGAAAATGGGTTTTGGCCAGAAAAAGGGGTCAAATTTCCCATAGTGCAACAC-C------AATA-------CCAACACCAACACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................AACAGCTGATTTCTTT...............................................................................................................................................................................................1640.25100000000010000000
dm3
GTAAGG---------GG-----GAAAAACTTA---A--------CGTTGCAGAT---------AAATGTT-TTTGTGCGTGCAATAGCTGATTTTAACATCTGATTTCTTTGCCG-TGGTGCCATATTAGTTTATTTCTGGTATGCAGAAATAAACATTGCTCAATTATGAATGCATG-CATTTACA--ATAATATTATATTAATCTACCG-ACTTTCATAAAATTGGATTTGGCCATAAAAAGTGGGTAATTTTCCAATAGTGCACCG---------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................T-TTTGTGCGTGCAATAGCTGA...................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TATATTAATCTACCG-ACTTTCATAAA...............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TGCCG-TGGTGCCATATTAGTTTATTTC....................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTAATCTACCG-ACTTTCATAAAATTGGA.........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCTGATTTCTTTGCCG-TGGTGCCA..................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TCTTTGCCG-TGGTGCCATATTAGTTTAT.......................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GTTGCAGAT---------AAATGTT-TTTGT..................................................................................................................................................................................................................................2131.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TCTACCG-ACTTTCATAAAATTGGATTTGGC...................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TTCATAAAATTGGATTTGGCCATAAAA............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GTTGCAGAT---------AAATGTT-TTTGTGCGT..............................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
AAAATG---------CGC----TTGAATCCCA---A--------TATTGCCACT---------GCTTGTATAGATAAATAGCAACAGCTGTTTTCATCAGCTGATTTCTTCGCAG-TGGCGCCATCTATTAAAATTTCTGTTATGCAACACTTAAAATTAATCTAATGTGAATACAATTCAG-------TTAAAATTATTTTAATTTTTTC-ACTTTCAAAAAATGGTTTTTGGCCAGAAAAAGTGGCTAAATTTCCTATAGTGCATC----------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AACATT---------TAA----GAA-TAATTGGTGGTTTAC------TACAGCT-------------GCC-ACCTCGTTAAAAAAAACAGACTTTAACAGCTGATAACTTAACGG-TAGTGCAGTCTGTTAAACTTTTATTTTAGTATCATTGGAGACTGATGTTATCTTAATCCATAAAAA-A---AGTCAAAATCAAT---TTCAAACC-ACTTTTAAAAAATGGGTTTTGGCCAA--AAAGTGGTAAAATTTCCCATAGTGCATCGC-A------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTAAAG---------ATTGCAAAGAAAACTTA---A--------TATTGCAGGT---------GCCTGTGCTTAGCAAATGCAACAGCTGTGTTTATCAGCTGATTTCTTTGTTG-CGGCGCTCTCTATAATAATTTCTGGTATGCAACACTAAAGATTTGTCTATTGTGAATGCATTACAA-------CAAAACTTTTTTGAATTTTCCG-ACTTTCAGAAAATGGGTTTTGGCCAAAAAAAGTGGTCAAATTCCCCATAGGGCGCTGC-TCGCTCACG-------------------TACSizeHit CountTotal NormTotal
No Reads
droEle1
TTAGTGTTAAATTTGGAA----GAAAAATTTA---C------GACTTTACAGCG---------CT-CGCTTTAAGTTGCACAAACAGCTGACTTTGACAGCGGATAGCTTAACAG-TAATGCGCTCTGTTAAAATTTTGTGTTTGCAACATTTAAGATTAGGATTATTTCTATCCATCGCGA-------TTAAAAAAAAAT--ATTTAACG-ACTTTTAAAAAATGGGTTTTGGGCCAAAAATGTGGTCGTTGGCCCCATAGTGCATCCC-ATTG----AGT-------TGCATACTGATGCSizeHit CountTotal NormTotal
No Reads
droRho1
TGAAAA---------AAT----TGCAAACTTA---G--------CGCTG------------------GTGCTTTT-GGATGCAACAGCTGACTTT-ACAGCTGTTATGCTAACATATGCTGTTAAGTATTAACATTTTGAGTATGAGGCATAACAGTTTGATGTTCTGTTAATGCACTCCCA-------TT-TTTTTTTTTTAATTAGAGC-ACTTTTAAAAAATGACTAAATGCCACATAAAGTGGTCAAAAACCCCATAGTGCATGGT-CGGGT-----A-------ACCATACAAA---SizeHit CountTotal NormTotal
No Reads
droFic1
TGAACA---------AAT----ACAAAAGAT--------------TTTACAGCA---------T---GTGCTTCTGTTAAAAAACAGCTGACTTTGACAGCTGATATCTTAACAG-TGGTGCGGTCTGTTAAAATTTTAAGTACGTAACATTTTACTTCCATGTTATCTTAACTCATTGCGA-------TTAAAAAAAATT--TTTTAACG-TCTTTTAAAAAATGGGTTTCGGCCACCAAATGTGGGCAAATGCCCCATAGTGCAGCGT-ATTAA----------------------AATGSizeHit CountTotal NormTotal
No Reads
droKik1
CTAATT---------TAA----GAATTG--TATTAA--------TATTCGCATTTTAAGTCTTGC-CGTTCGCTCGTGTGCAATCAGCTGTCTTTGGAAGACTCTTGTGCGAGAG-TGGCGCCACCTGGGAAGATTTCGAGAATGGTACGTTGATGGTCACTCTATTTCTAATTAATAGAGA-------CCAAAATAACTTTATTTGGTAA-ACTTTCAAAAAATGGGTTTTGGCCAAATAAAGTGGTCGACTGGACCATAGTGCAATGT-TTGATTACG-------------------GATSizeHit CountTotal NormTotal
No Reads
droAna3
TGAACC---------TGA----GAAAAAATTT-------TTCGCTTTTGCAACT---------TGCTTTT-TTATTAGGAAAAACAGCTGACTTCAACAGCTGATTGTCAATTAG-TGGCGCCATCTATTACGTTTACATTTATGAAACAGTAAAGATTGGTCATTTCTTTATACATTCCAA-------TTAAAAAAGGAA--TATTTTTA-ACTTTTAAAAAATGGGTTTTGGCCAGAAAAAGTGGTCAAATGTCCCATAGGGCGATGC-ATGCACTAGAACCTTGTTCCGATGCAATTTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................TTCAACAGCTGATTGTCAATTAG-TGGC......................................................................................................................................................................................2741.255140000
...........................................................................TAGGAAAAACAGCTGACTTCAACAGC.........................................................................................................................................................................................................2611.001010000
.............................................................................................TCAACAGCTGATTGTCAATTAG-TGGC......................................................................................................................................................................................2641.004040000
..............................................................................................CAACAGCTGATTGTCAATTAG-TGGCGCC...................................................................................................................................................................................2840.753030000
..............................................................................................CAACAGCTGATTGTCAATTAG-TGGC......................................................................................................................................................................................2540.753030000
.............................................................................................TCAACAGCTGATTGTCAATTAG-TGGCGC....................................................................................................................................................................................2840.502020000
..................................................................................................AGCTGATTGTCAATTAG-TGGCGCC...................................................................................................................................................................................2440.502020000
.....................................................................................................TGATTGTCAATTAG-TGGCGCCATCT...............................................................................................................................................................................2540.502200000
.................................................................................................CAGCTGATTGTCAATTAG-TGGCGCC...................................................................................................................................................................................2540.502020000
..............................................................................................CAACAGCTGATTGTCAATTAG-TGGCGC....................................................................................................................................................................................2740.502020000
...............................................................................................AACAGCTGATTGTCAATTAG-TGGC......................................................................................................................................................................................2440.502020000
.....................................................................................................TGATTGTCAATTAG-TGGCGCCATCTAT.............................................................................................................................................................................2740.502200000
...................................................................................................GCTGATTGTCAATTAG-TGGCGCCA..................................................................................................................................................................................2440.251010000
............................................................................................TTCAACAGCTGATTGTCAATTAG-TGGCGC....................................................................................................................................................................................2940.251010000
..............................................................................................CAACAGCTGATTGTCAATTAG-TGGCGCCA..................................................................................................................................................................................2940.251010000
..................................................................................................AGCTGATTGTCAATTAG-TGGCGCCA..................................................................................................................................................................................2540.251010000
...............................................................................................AACAGCTGATTGTCAATTAG-TGGCGCC...................................................................................................................................................................................2740.251010000
................................................................................................ACAGCTGATTGTCAATTAG-TGGCGCCATC................................................................................................................................................................................2940.251010000
..................................................................................................AGCTGATTGTCAATTAG-TGGCGC....................................................................................................................................................................................2340.251010000
...............................................................................................AACAGCTGATTGTCAATTAG-TGGCGCCA..................................................................................................................................................................................2840.251010000
.........................................................................................................TGTCAATTAG-TGGCGCCATCTA..............................................................................................................................................................................2240.251100000
................................................................................................ACAGCTGATTGTCAATTAG-TGGC......................................................................................................................................................................................2340.251010000
..............................................................................................CAACAGCTGATTGTCAATTAG-TGGCGT....................................................................................................................................................................................2740.251010000
..................................................................................................AGCTGATTGTCAATTAG-TGGCGCCATC................................................................................................................................................................................2740.251010000
...................................................................................................GCTGATTGTCAATTAG-TGGCGCC...................................................................................................................................................................................2340.251010000
...............................................................................................AACAGCTGATTGTCAATTAG-TGGCG.....................................................................................................................................................................................2540.251000010
................................................................................................ACAGCTGATTGTCAATTAG-TGGCGCCA..................................................................................................................................................................................2740.251010000
...................................................................................................GCTGATTGTCAATTAG-TGGCGCCATC................................................................................................................................................................................2640.251010000
.....................................................................................................TGATTGTCAATTAG-TGGCGCCATC................................................................................................................................................................................2440.251010000
....................................................................................................CTGATTGTCAATTAG-TGGCG.....................................................................................................................................................................................2040.251100000
.....................................................................................................................................................................TTCTTTATACATTCCAA-------TTAAAATT.........................................................................................................2550.201010000
.........................................................................................................................................................AAGATTGGTCATTTCTTTATACATTCC..........................................................................................................................2750.201010000
...........................................................................................................................................................GATTGGTCATTTCTTTATACATTCCAA-------T................................................................................................................2850.201010000
...........................................................................................................................................................................................................................AAAAATGGGTTTTGGCCAGAAAAAGTGG.......................................................2870.141010000
................................................................................................................................................................................................................................TGGGTTTTGGCCAGAAAAAGTGGTCA....................................................2670.141100000
................................................................................................................................................................................................................................TGGGTTTTGGCCAGAAAAAGTGG.......................................................2380.131100000
droBip1
TTAAC-------------------AAAACTTA---A--------TATTTTAATA---------GCCTGTGCTTTGCAATTGCAACAGCTGTGTTTGTCAGCTGATTCCTTTGTTG-TGCCGCCCTCTATCAAATTTTTTGTTATGCACCACTGAAGATTGGTGAATTTGGAATGCGTTACAC-------TAAAAAATATTTATATTTTAAG-ACTTTCAGAAAATGGGGTTTTGTCACAAAAACTGGTCAAATTCCCCATAGTGCACCGC-TTCGT-------------CCGAG----GCACSizeHit CountTotal NormTotal
No Reads
dp5
GAGATA---------TCT----AAAGTGGTTATTAATTTGCCAC--------TT-TTTCCCTTCA-CGTGCTTTACTATAAAAACAGTTGGGTTGCACAGCTGATTTTGCAAATG-TGGCGCCATCTATGGAAATTTCTGGTACGCAGATTTAATGGTCGATCTTTTTCTAATGCGGAGCGA-------TCAAAACCAGGTTTCTGTTTTG-ACTTTGAAAAATTAGGTTTTGGCCAACAAAAGTGGTCGTTCGGACCATAGTGGGGTGT-ATGT---------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................TCTATGGAAATTTCTGGTACGCAGATT.......................................................................................................................................................2793.8935013000002200
............................................................................................................................TCTATGGAAATTTCTGGTACGCAGA.........................................................................................................................................................2592.111900000001900
.............................................................................................................................CTATGGAAATTTCTGGTACGCAGATT.......................................................................................................................................................2691.11100100000900
............................................................................................................................TCTATGGAAATTTCTGGTACGCAGAT........................................................................................................................................................2691.111000000001000
............................................................................................................................TCTATGGAAATTTCTGGTACGCAG..........................................................................................................................................................24130.85110000100820
.........................................................................TACTATAAAAACAGTTGGGTTGCACAG..........................................................................................................................................................................................................2770.5740200000200
............................................................................TATAAAAACAGTTGGGTTGCACAGC.........................................................................................................................................................................................................2580.5040100000300
..............................................................................................................................TATGGAAATTTCTGGTACGCAGATT.......................................................................................................................................................2590.4440300000100
.........................................................................TACTATAAAAACAGTTGGGTTGCACAGC.........................................................................................................................................................................................................2870.4330300000000
.........................................................................TACTATAAAAACAGTTGGGTTGCACA...........................................................................................................................................................................................................2670.4330000000300
....TA---------TCT----AAAGTGGTTATTAA..........................................................................................................................................................................................................................................................................1930.3310100000000
.............................................................................................................................CTATGGAAATTTCTGGTACGCAG..........................................................................................................................................................23130.3140000000400
..........................................................................................................................CATCTATGGAAATTTCTGGTA...............................................................................................................................................................21130.3140000000400
.............................................................................................................................CTATGGAAATTTCTGGTACGCAGAT........................................................................................................................................................2590.2220100000100
..........................................................................................................................................................................................................................................CCAACAAAAGTGGTCGTTCGG...............................................21200.2040000000040
................................................................................................................................................................................................................................TAGGTTTTGGCCAACAAAAGTGG.......................................................23160.1930100000200
...........................................................................................................................ATCTATGGAAATTTCTGGTACGCAG..........................................................................................................................................................25120.1720000000200
..............................................................................................................................TATGGAAATTTCTGGTACGCAG..........................................................................................................................................................22130.1520000000200
......................................................................................................................................................................................................................................TTGGCCAACAAAAGTGGTCGTTCGGA..............................................26200.1530000000300
........................................................................TTACTATAAAAACAGTTGGGTTGCAC............................................................................................................................................................................................................2670.1410100000000
.........................................................................TACTATAAAAACAGTTGGGTTGCA.............................................................................................................................................................................................................2470.1410100000000
.........................................................................TACTATAAAAACAGTTGGGTT................................................................................................................................................................................................................2170.1410100000000
............................................................................................................................TCTATGGAAATTTCTGGTACGC............................................................................................................................................................22150.1320000000200
............................................................................TATAAAAACAGTTGGGTTGCAC............................................................................................................................................................................................................2280.1310000100000
........................................................................................................................................TCTGGTACGCAGATTTAATGGTCGATCT..........................................................................................................................................2890.1110100000000
..............................................................................................................................TATGGAAATTTCTGGTACGCAGA.........................................................................................................................................................2390.1110000000100
........................................................................................................................................TCTGGTACGCAGATTTAATGGTCGA.............................................................................................................................................2590.1110100000000
......................................................................................................................................TTTCTGGTACGCAGATTTAATGGTCGATC...........................................................................................................................................2990.1110100000000
.........................................................................................................................................CTGGTACGCAGATTTAATGGTCGA.............................................................................................................................................2490.1110100000000
..............................................................................................................................TATGGAAATTTCTGGTACGCAGAT........................................................................................................................................................2490.1110000000100
.......................................................................................................................................................................................................................................TGGCCAACAAAAGTGGTCGTTCGGACC............................................27200.1020100000100
.............................................................................................................................................................................................................................................ACAAAAGTGGTCGTTCGGAC.............................................20200.1021000000010
.......................................................................................................................................................TAATGGTCGATCTTTTTCTAATGC...............................................................................................................................24100.1010100000000
.........................................................................................................................CCATCTATGGAAATTTCTGGTACGC............................................................................................................................................................25120.0810000000100
....................................................................................................................TGGCGCCATCTATGGAAATTTCTGG.................................................................................................................................................................25120.0810000000010
............................................................................................................................TCTATGGAAATTTCTGGTACGCA...........................................................................................................................................................23150.0710000000100
...............................................................................................................................ATGGAAATTTCTGGTACGC............................................................................................................................................................19150.0710100000000
..................................................................................................................................................................................................................................GGTTTTGGCCAACAAAAGTGG.......................................................21190.0510100000000
.............................................................................................................................................................................................................................................ACAAAAGTGGTCGTTCGGACC............................................21200.0510100000000
.......................................................................................................................................................................................................................................TGGCCAACAAAAGTGGTCGTTCGG...............................................24200.0510100000000
.........................................................................................................................................................................................................................................GCCAACAAAAGTGGTCGTTCGGACC............................................25200.0510100000000
droPer2
GAGATA---------TCT----AAAGTAGTTATTAATTTGCCAC--------TT-TTTCCCTTCA-CGTGCTTTACTATAAAAACAGTTGGGTTGCACAGCTGATTTTGCGAATG-TGGCGCCATCTATGGAAATTTCTGGTACGCAGATTTAATGGTCGATCTTTTTCTAATGCAGAGCGA-------TCAAAACCAGGTTTCAGTTTTG-ACTTTGAAAAATTAGGTTTTGGCCAACAAAAGTGGTCGTTCGGACCATAGTGCGACGGGGCGCACGCACA-------CATACACAGACACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................TATGGAAATTTCTGGTACGCAGATT.......................................................................................................................................................252011.9023802380000
......................................................................................................................................................................TTCTAATGCAGAGCGA-------TCAAAACCAGG......................................................................................................27201.20240240000
.............................................................................................TGCACAGCTGATTTTGCGAATG-TGGCGC....................................................................................................................................................................................28200.55110110000
......................................................................................................................................................................TTCTAATGCAGAGCGA-------TCAAAACCAG.......................................................................................................26200.50100100000
.............................................................................................TGCACAGCTGATTTTGCGAATG-TGGC......................................................................................................................................................................................26200.459090000
.......................................................................................................................................................TAATGGTCGATCTTTTTCTAATGCAGAGC..........................................................................................................................29200.408800000
.............................................................................................................................CTATGGAAATTTCTGGTACGCAGA.........................................................................................................................................................24200.357070000
.............................................................................................................................CTATGGAAATTTCTGGTACGCAGATT.......................................................................................................................................................26200.306006000
.............................................................................................TGCACAGCTGATTTTGCGAATG-TG........................................................................................................................................................................................24200.306060000
.............................................................................................................................................................TCGATCTTTTTCTAATGCAGAGCGA-------TC...............................................................................................................27200.255050000
...................................................................................................................................................................TTTTTCTAATGCAGAGCGA-------TCAAAA...........................................................................................................25200.255050000
.............................................................................................................................................................TCGATCTTTTTCTAATGCAGAGCGA-------.................................................................................................................25200.204040000
.............................................................................................TGCACAGCTGATTTTGCGAATG-T.........................................................................................................................................................................................23200.204040000
.....................................................................................................................................................................TTTCTAATGCAGAGCGA-------TCAAAACCAGG......................................................................................................28200.204040000
..........................................................................................................TTGCGAATG-TGGCGCCATCTATGGAAA........................................................................................................................................................................27200.153030000
.......................................................................................................................................................................TCTAATGCAGAGCGA-------TCAAAACCAGGTT....................................................................................................28200.153030000
..........................................................................................................................................................................AATGCAGAGCGA-------TCAAAACCAGG......................................................................................................23200.102020000
..............................................................................................GCACAGCTGATTTTGCGAATG-..........................................................................................................................................................................................21200.102020000
.......................................................................................................................................................................TCTAATGCAGAGCGA-------TCAAAACCAGGT.....................................................................................................27200.102200000
...........................................................................................................................................................GGTCGATCTTTTTCTAATGCAGAGCGA-------.................................................................................................................27200.102020000
..............................................................................................................................TATGGAAATTTCTGGTACGCAGA.........................................................................................................................................................23200.102020000
..........................................................................................................................................................................AATGCAGAGCGA-------TCAAAACCAGGTT....................................................................................................25200.051010000
................................................................................................................................TGGAAATTTCTGGTACGCAGATT.......................................................................................................................................................23200.051010000
....................................................................................................................................................................TTTTCTAATGCAGAGCGA-------TC...............................................................................................................20200.051010000
.......................................................................................................................................................TAATGGTCGATCTTTTTCTAATGCAGA............................................................................................................................27200.051010000
...............................................................................................................................ATGGAAATTTCTGGTACGCAGA.........................................................................................................................................................22200.051010000
.........................................................................TACTATAAAAACAGTTGGGTTGCACAGC.........................................................................................................................................................................................................28200.051010000
....................................................................................................................................................................TTTTCTAATGCAGAGCGA-------TCAAAACCAGG......................................................................................................29200.051010000
......................................TGCCAC--------TT-TTTCCCTTCA-CG..........................................................................................................................................................................................................................................20200.051010000
.........................................................................................................TTTGCGAATG-TGGCGCCATCTATGGAAA........................................................................................................................................................................28200.051000001
.........................................................................................................................................................................TAATGCAGAGCGA-------TCAAAACC.........................................................................................................21200.051010000
..........................................................................................................................................................TGGTCGATCTTTTTCTAATGCAGAGCGA-------.................................................................................................................28200.051001000
.........................................................................TACTATAAAAACAGTTGGGTTG...............................................................................................................................................................................................................22200.051010000
.............................................................................................................................CTATGGAAATTTCTGGTACGCAGAT........................................................................................................................................................25200.051001000
....................................................................................CAGTTGGGTTGCACAGCT........................................................................................................................................................................................................18200.051001000
...................................................................................................................................................................................................CCAGGTTTCAGTTTTG-ACTTTGAAAAA...............................................................................27200.051010000
.............................................................................................TGCACAGCTGATTTTGCGAATG-TGGT......................................................................................................................................................................................26200.051010000
...................................................................................................................................................................TTTTTCTAATGCAGAGCGA-------TC...............................................................................................................21200.051010000
...................................................................................................................................................................TTTTTCTAATGCAGAGCGA-------TCAAA............................................................................................................24200.051010000
.........................................................................................................................CCATCTATGGAAATTTCTGGTACGCAGA.........................................................................................................................................................28200.051010000
.........................................................................................................................................................ATGGTCGATCTTTTTCTAATGCAGAGC..........................................................................................................................27200.051010000
............................................................................................................GCGAATG-TGGCGCCATCTATGGAAAA.......................................................................................................................................................................26200.051010000
......................................................................................................................................................................TTCTAATGCAGAGCGA-------TCAAAACCAGGTT....................................................................................................29200.051010000
...................................................................................................................................................................TTTTTCTAATGCAGAGCGA-------TCAAAACCA........................................................................................................28200.051010000
..............................................................................................................................................ACGCAGATTTAATGGTCGATCTTTTAA.....................................................................................................................................27200.051010000
...................................................................................................................................................................TTTTTCTAATGCAGAGCGA-------T................................................................................................................20200.051010000
.......................................................................................................................................................TAATGGTCGATCTTTTTCTAAT.................................................................................................................................22200.051010000
.........................................................................TACTATAAAAACAGTTGGGTTGCA.............................................................................................................................................................................................................24200.051010000
..............................................................................................GCACAGCTGATTTTGCGAATG-TGGC......................................................................................................................................................................................25200.051010000
.................................................................................................................................................................TCTTTTTCTAATGCAGAGCGA-------TCAAAAC..........................................................................................................28200.051010000
droWil2
GAGGGA---------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GCGGTT---------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCAAATG-------CGGA-----ATGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..GGTT---------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCAAATG-------CGGA-----AT..2011.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
ATAAAG---------TTT----TACAAACTTG---A--------TAAT-------------------GTGCGTGTCATGCATAACAGCTCTGTTTAACAGCAGTTTAGTTAGCAGATCGCG-CCTCTGTTGAAATTCTGAGTATGTAACATTTACATATAGGCTATTCTTAATGGATTGGCA-------TTAAAATTTTGTAAATTTTTTCAACTTGGAAA-TAAGACTTTTTTCCAAA-AAATCGGGCTTTTGACCCATAGTGCACAGGCACACACAGACA-------CAGAGACACACACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................TTTAACAGCAGTTTAGTTAGCAGATCG.......................................................................................................................................................................................27170.061100000
..........................................................................................TGTTTAACAGCAGTTTAGTTAGCA............................................................................................................................................................................................24170.061100000
....................................................................TGCGTGTCATGCATAACAGCTCTG..................................................................................................................................................................................................................24200.051100000
.............................................................................TGCATAACAGCTCTGTTTAACAGCAGTT.....................................................................................................................................................................................................28200.051100000
.............................................................................TGCATAACAGCTCTGTTTAACAGCAG.......................................................................................................................................................................................................26200.051100000
..........................................................................................................................................................................................................................................CCAAA-AAATCGGGCTTTTGACCC............................................23200.051000010
.......................................................................................................................................TCTGAGTATGTAACATTTACATATAGG............................................................................................................................................27200.051100000

Generated: 05/17/2015 at 11:55 PM