ID:

dya_965

 Coordinate:

3R:7045282-7045432 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.0 -10.0 -9.8

Flybase annnotation

CDS [Dyak\GE25792-cds]; exon [dyak_GLEANR_9393:2]; snoRNA [Dyak\snoRNA:GE27121-RA]; exon [Dyak\snoRNA:GE27121:1]; intron [Dyak\GE25792-in]

No Repeatable elements found

Sense Strand Reads

##################################################################################################################################-----------------------------------------------------------------------##################################################
GACAGATAGTTTAGTTTCTGGCTTACAGAACACCAAAATAAAAATGAAACACGCACTTTTGTTGACCCAGGAGCTACTTAGGGCTAAGCTATTTGCCATGGTGACGACGTCTTTAGTAATCTGAATGCAACCTATATGTAGTAATTTTCTGCTTTACGGCCTGCCTCTTATTTATATTCGCTTTCCTTTCTATCCTTTCAGATTGAACGCTCTAAGACCAAGGGCAAAGGATGGTTTAACCTCCCCGCAAC
***************************************************************....((((...((((.(((((...(((((.....)))))......))))).)))).))))...***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528802
follicle cells		 V120
male body		 M043
female body
 M026
head
 M056
embryo
 V046
embryo
 V058
head
.........................................................................................................GACGTCTTTAGTAATCTGAAT............................................................................................................................. 21 0 1 42.00 42 41 0 1 0 0 0 0
.....................................................................................................TGACGACGTCTTTAGTAATCTGAAT............................................................................................................................. 25 0 1 19.00 19 19 0 0 0 0 0 0
............................................................................................................GTCTTTAGTAATCTGAAT............................................................................................................................. 18 0 1 17.00 17 17 0 0 0 0 0 0
.............................................................................................................TCTTTAGTAATCTGAAT............................................................................................................................. 17 0 1 12.00 12 12 0 0 0 0 0 0
...............................................................GACCCAGGAGCTACTTAGGGCTAAGC.................................................................................................................................................................. 26 0 1 10.00 10 0 9 1 0 0 0 0
...........................................................................................................CGTCTTTAGTAATCTGAAT............................................................................................................................. 19 0 1 6.00 6 6 0 0 0 0 0 0
...............................................................................................................TTTAGTAATCTGAAT............................................................................................................................. 15 0 1 4.00 4 4 0 0 0 0 0 0
....................................................................................................GTGACGACGTCTTTAGTAATCTGAAT............................................................................................................................. 26 0 1 4.00 4 0 4 0 0 0 0 0
..............................................................................................GCCATGGTGACGACGTCTTTAGTAATCTGAAT............................................................................................................................. 32 0 1 3.00 3 3 0 0 0 0 0 0
.................................................CACGCACTTTTGTTGACCCAGG.................................................................................................................................................................................... 22 0 1 3.00 3 0 1 1 0 1 0 0
................................................................................................CATGGTGACGACGTCTTTAGTAATC.................................................................................................................................. 25 0 1 3.00 3 0 0 0 3 0 0 0
...................................................................CAGGAGCTACTTAGGGCTAAGC.................................................................................................................................................................. 22 0 1 3.00 3 0 3 0 0 0 0 0
..................................................................CCAGGAGCTACTTAGGGCTAAGC.................................................................................................................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0
...............................................................GACCCAGGAGCTACTTAGGGCTAAGCT................................................................................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0
................................................................................................CATGGTGACGACGTCTTTAGTAATCTGA............................................................................................................................... 28 0 1 2.00 2 0 0 0 2 0 0 0
...............................................................................................CCATGGTGACGACGTCTTTAGTAATCTGAATG............................................................................................................................ 32 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................TGACGACGTCTTTAGTACTCTGAAT............................................................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................TGACGACGTCTTTGGTAATCTGAAT............................................................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0
................................................................................................CATGGTGACGACGTCTTTAGT...................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0
....................................................................AGGAGCTACTTAGGGCTAAGC.................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0
...............................................................GACCCAGGAGCTACTTAGGG........................................................................................................................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0
.................................................................................................ATGGTGACGACGTCTTTAGTAATCTGAAT............................................................................................................................. 29 0 1 2.00 2 0 2 0 0 0 0 0
................................................TCACGCACTTTTGTTGACCCAGGAG.................................................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................GACCCAGGAGCTACTCAGGGCTAAGC.................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0
..................................................ACGCACTTTTGTTGACCCAGG.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................GACGTCTTTAGTATTCTGAAT............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................AGGAGCTACTTAGGGCTAAG................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.......................................AAAAATGAAACACGCACTTTTGTTGACC........................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................TATTTGCCATGGTGACGACGTCTTT......................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................CAGGAGCTACTTAGGGCTAAGCT................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................CATGGTGACGACGTCTTTAGTAATCTGAAT............................................................................................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................CGTCTTTAGTAATCTGACT............................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................ACGTCTTTAGTAATCTGAGC............................................................................................................................. 20 2 1 1.00 1 0 0 0 1 0 0 0
....................GCTTACAGAACACCAAAAT.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................CATGGTGACGACGTCTTTAGTAATCTG................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................GGTGACGACGTCTTTAGTAATCTGAGC............................................................................................................................. 27 2 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................TATTTGCCATGGTGACGACGTC............................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................GCCATGGTGACGACGTCTTTA........................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................TTTTCTGCTTAACGGCCCGCC...................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0
.....ATAGTTTAGTTTCTGGCTTACAGAAC............................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................TATTTGCCATGGTGACGACGT............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0
...............................................................................................CCATGGTGACGACGTCTTTAGTA..................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1
....................................................................................TAAGCTATTTGCCATGGTGACGACGTCTT.......................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................GCTATTTGCCATGGTGACGACGTCT........................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
................................................ACACGCACTTTTGTTGACCCAGGA................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................CGTCTTTAGTAATGTGAAT............................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
...............................................AACACGCACTTTTGTTGACCCAG..................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................................................................GTTTTCTGCTTAACGGCCCGCC...................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................GACGTCTTTCGTAATCTGAAT............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................GGCTTTAGTAATCTGAATGC........................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................TATTTGCCATGGTGACGACGTCTTTAGT...................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................TATTTGCCATGGTGACGACGTCTT.......................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................GCCATGGTGACGACGTCTTTAGT...................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................TGACGACGTATTTAGTAATCTGAAT............................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................CATGACGACGTCTTTAGTAATCTGAA.............................................................................................................................. 26 2 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................ACGTCTTTAGTAATCTGAAT............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0
................................................................................................CATGGTGACGACGTCTTTAGTAATCTGAA.............................................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................GTGACGACGTCTTTAGTAATCTAAT.............................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0
..........................................AATGAAACACGCACTTTTGTT............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................CAAGGGCAAAGGATGGTTTAACCT......... 24 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................GTGACGACGTCTTTAGTAATCTGAATG............................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................TGGTGACGACGTCTTTAGTAATCTGAAT............................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................CGTCTTTCGTAATCTGAAT............................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CGACCTCTTTAGTAATCTGAAT............................................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0
................................................................................................CATGGTGACGACGTCTTTAGTAATCTGG............................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0
....GATAGTTTAGTTTCTGGCTTACA................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................CCATGGTGACGACGTCGTTAGTAATCTGAATG............................................................................................................................ 32 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................GACGACGTCTTTAGTAATCTGAGCG............................................................................................................................ 25 2 1 1.00 1 0 0 0 0 0 0 1
......TAGTTTAGTTTCTGGCTTACAG............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
GACAGATAGTTTAGTTTCTGGCT.................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................AGGAGCTACTTAGGGCTAAGCT................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................ATTTGCCATGGTGACGACGTCTTTAG....................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.................................................CACGCACTTTTGTTGACCCAGGA................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................GCCATGGTGACGACGTCTTTAGTAATCT................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................GACGTCTTTAGTAATCTGACT............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................ACGCACTTTTGTTGACCCA...................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................CCATGGTGACGACGTCTTTAGTAATCTG................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................GACGTCTTTAGTAATCGGAAT............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................GAAACACGCACTTTTGTTGACC........................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0
....GATAGTTTAGTTTCTGGCTTACAGAAC............................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................TTGTTGACCCAGGAGCTACTTA........................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................TTGACCCAGGAGCTACTTAG.......................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................CGTCTTTAGGAATCTGAAT............................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................CCATGGTGACGACGTCTTTA........................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0
....GATAGTTTAGTTTCTGGCTTA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0
..............................................................................................GCCATGGTGACGACGTCTTTAGTGATCTGAAT............................................................................................................................. 32 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................TTTTCTGCTTAACGGCCCG........................................................................................ 19 2 3 0.67 2 0 0 2 0 0 0 0
............................................................................................................GTCTTTACTAATCTGAAT............................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................................TTTTCTGCTTAACGGCCCGC....................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0
..................................................................................................................................................TTCTGCTTAACGGCCCGCC...................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0
...............................................................................................................................................CTTTTCTGCTTAACGGCCCG........................................................................................ 20 3 10 0.30 3 0 0 3 0 0 0 0
...................................................................................................................................................TCTGCTTAACGGCCCGCC...................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0
.................................................................................................................................................TTTCTGCTTAACGGCCCG........................................................................................ 18 2 5 0.20 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................GACGAAGGGGAAAGAATGGT................ 20 3 5 0.20 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................CAGATTGAGCGCTCT...................................... 15 1 9 0.11 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AAAAGGATGGGTTAGCCTC........ 19 3 11 0.09 1 0 0 1 0 0 0 0

Anti-sense strand reads

CTGTCTATCAAATCAAAGACCGAATGTCTTGTGGTTTTATTTTTACTTTGTGCGTGAAAACAACTGGGTCCTCGATGAATCCCGATTCGATAAACGGTACCACTGCTGCAGAAATCATTAGACTTACGTTGGATATACATCATTAAAAGACGAAATGCCGGACGGAGAATAAATATAAGCGAAAGGAAAGATAGGAAAGTCTAACTTGCGAGATTCTGGTTCCCGTTTCCTACCAAATTGGAGGGGCGTTG
*****************************************************************************************************************************....((((...((((.(((((...(((((.....)))))......))))).)))).))))...*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V052
head
 V058
head
........................................................................................................................................................................................................................................CCAGATTGGATGGGCGTT. 18 2 1 1.00 1 1 0
....................................................................................................................................................................................................................ATTCTGGTTCGAGTTTCCTA................... 20 2 1 1.00 1 1 0
...................................................................................................................................................................................................................GTTTTTGGTTCCGGTTTCCTA................... 21 3 15 0.07 1 0 1
.........................................................................................................................................................................................................................................CTAATGGGAGGGGCGTT. 17 2 18 0.06 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3R:7045232-7045482 + dya_965 GA-CAGATAGTTTAGTTTCTGGCTTACAGAACAC-----CAAAATAA---------AAATG---AAAC------AC---------GCACTTTTGTTGA----CCC---------AGGAGCT--------ACTTAGGGCTAAGCTATT---TGCCAT-GGTGACGACGTCTTTAGTAATCTGAATGCAACCT-AT-------ATGT-A-GTAA-----------TTTTCTGCTTTACG--GCC----------------T----------------------------------------------------GCCTCTTATTTATATTCGCTT---TCCTTTCTATCCTTTCAGATTGAACGCTCTAAGACCAAGGGCAAAGGATGGTTTAACCTCCCCGCAAC
droEre2 scaffold_4770:3563241-3563486 - der_528 GA-CAGATAGTTTAGTTTCTGGCTTACAGAACAC-----CCAACTAG---------AAATG---AAAC------AC---------GCACTATTGTCGA----CCC---------AGGAGCC--------ACTTAGGTCCAAGCTATT---TGCCAT-GGTGACGACGTCTTTAGTAATCTGAATGCAACAT-ATGTA---TCTGC-A-GTAA-----------TTTCCTGCTT-ACA--ACT----------------T----------------------------------------------------GC-TGTTATTTCTAATCGCCT---T-------CTTTTTTCAGGCTGAACGCTCCAAGACTAAGGGCAAAGGATGGTTTGATCTGCCCGCAAC
droSec2 scaffold_6:3388469-3388708 - dse_1483 GA-CAGGTAGTTTAGTCTCTGTCTTACAGAACAC-----CCAAA-TG---------AAATG---AAAC------AC---------GCGCTATTGTCGA----CCC---------AGGAGCC--------ACTTAGGTCTAAGCTATA---TGCCGT-GGTGACGACGTCTTTAGTAATCTGAGCGCAACAT-AT-------------AGAGA-----------ATTCCAGCTCTATA--ACT----------------T----------------------------------------------------GC-TTTCATTTCTAATCGCCT---TC-----CTTTTTTTCAGGCTGAACGCTCCAAGACCAAGGGCAAGGGATGGTTTAATATGCCCGCCAC
droSim2 3r:3216901-3217140 - dsi_6737 GA-CAGATAGTTTAGTCTCTGGCTTACAGAACAC-----CCAAA-AG---------AAATG---AAAC------AC---------GCGCTATTGTCGA----CCC---------AGGAGCC--------ACTTAGGTCTAAGCTATA---TGCCGT-GGTGACGACGTCTTTAGTAATCTGAGCGCAACAT-AT-------------AGAAA-----------ATTCCAGCTTTATA--ACT----------------T----------------------------------------------------GC-TTTCATTTCTAATCGCCT---TC-----TTTTTTTTCAGGCTGAACGCTCCAAGACCAAGGGCAAGGGATGGTTTAATATGCCCGCCAC
dm3 chr3R:3298520-3298758 - GA-CAGATAGTTTAGTCTCTGGTTTACAGAACAC-----CCAAATGG---------AAATG---AAAC------AC---------GCGCTTTTGTCGA----CCC---------AGGAGCC--------AGTTAGGTCTAAGCTGTT---TGTCAT-GGTGACGACGTCTTTAGTAATCTGAGCGCAACAT-AT-------------TGGAA-----------ATTTCAGACC-CTA--CCT----------------T----------------------------------------------------GC-TTTTATTTTTAATCGCCT---TC------CTTTTTTCAGGCTGAACGCTCAAAGACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCAC
droEug1 scf7180000409503:30330-30559 + GT-CAGATAACTAAGTAACTAGCCTACACAATAT-----CATCTTAA---------ATGTT---ATGA------AA---------GAACTGTGGTCTA-------------------AATT--------AATTATGTCTGAGAAAGT---TGCCAT-ATTGACGACGACTTTAGTAATCTGAAAACAAGA---------------T-GGGCA-----------ACTTCAGCAT------------------TTATACTTT----------------------------------------------------A-TTCCTTTCTTAATCGTCT-----------TAATTTTTAGGCTAAAAGCTCCAAAACTAAGGGAGGAGATTGGGCTTACTTTCCTGCCTC
droBia1 scf7180000302155:257705-257935 - GA-CTGACAACTTAGGCCATGGCTTACAGAACAC-----AAACCTCA---------AAATG---AAGC------AC---------AGTGGATTGTCGA----CGC---------AGGATCC--------ACTTAGGTCTGGG----T---TGCC---ATTGACGACGTCTTTAGTAATCTGACAGCATGA-----------------CGGCA-----------ACTCCAGCTG------------------ACGTTTTTA----------------------------------------------------A-GTCCTTTTCTAATCCTA----T-----CTTATATCTCAGGCTGAACGCGCCAAATCCAAGGGCAAGGGCTGGTATGATTTGCCCGCGAC
droTak1 scf7180000415088:54885-55121 + AA-CTGGTAATTTAGGCTATGGCTTACAAAACAT-----TACCATCA---------AAATG---AAGC------AA------------ATATTGTCGA----CCC---------AGGAGAC--------ACTTAGGTCTGAGCTAGT---TGCCCC-ATTGACGACGTCTTTAGTAATCTGAGAAAAATA---------------T-AGATA-----------TAACCAGCTA------------------TTGTATTTA---------------------------------------------------AT-TTCCTTTTCTAATCGCCT---TT-----CTGTTTTTCAGGTTGAACGCGCTCGAACCAAAGGAAAAGGTTGGTTTGATTTGCCCGCCAC
droEle1 scf7180000486649:8078-8317 + GA-CAGATAAATTTTGCTCTGGCATACAGATAAT-----TTACCAAA-----------A-T---AAGC------TA---------AGACTATTGTCAAAACGCCA---------AGGAGCT--------GCTTAGGCCTGAGCTATT---TGCCAA-ATTGACGACGTCTTTAGTAATCTGAGAACAGGA---------------C-CGTCA-----------TTTTCAGCTC------------------ACTTGTTCTATTTCCG---------------------------------------------------GATTCTAATCCTGT---T-------TGTTTTTCAGACTGAACGCGCAAAAACCAAGGGGAGCGGATGGTTTCATTTGCCCGCCAC
droRho1 scf7180000774841:5869-6104 + GA-CAGATAATTTTGGCTCTGGCTTACAGATCTTAA---TCAAA-AG---------CAAAG---AAAC------AA---------TA-GT-ATGTCGGTACACCT---------AG-------------GCCTAGGCCTGAGCTAGT---TGCCGT-ATTGACGACGTCTTTAGTAATCTGAAAGCAGAA---------------A-ACCCA-----------TCCCCAGCTG------------------ACAGATTCT---------------------------------------------------AT-TTTCTTTTCTAATCGTCT---T-------CATTTTTCAGGCTGAACGCGGTAAAACCAAGGGGAGCGGCTGGTTTAATTTGCCCGCCAC
droFic1 scf7180000453305:22420-22675 - GA-AAGATAATTAAGGCCATGGCTTACAGACCAA-----CAAC---A---------AAATG---AAAC------AG---------CGACTGTTATCCGTCCACTT-----ACCCCAGAGCTATGTGTATATTTACTTCTGAATCAGG---TGCCAC-ATTGACGACTTCTTTAGTAATCTGAAAGAATTT---------------CA-GACA--------TTT---------T-TTTAAT--TACATTCT-TTGTAA--------TTTTTAACAAT------------------------------------------------ACA----TTTCT-----TATTTTTTTCAGACTGAACGCGCCAAAACCGCGGGATCTGGCTGGTTTGATTTGTCCGCAAC
droKik1 scf7180000301747:9565-9837 + GA-CAGACTCCTTAAACTCGGGCTTACAAAACTT-----TTACATACATATGTATATAATGAAA----CCA---TA---------AAGCTAAAGTCGA----CAA-----GAGCAGGAGGT--------GCTTAGGCCTAAGCTGCA---TGTTTTATTTGATGACGTCTTTAGTAATCTGATAGTATGAT-GTTGC---CCTTT-A-GTT--------AAGAAATCTTGTTT-GTA--ACTTAGA------CAATT--------T------------------------------------------------TTATATTTTGAAACTTT----T-----TAAATTTTTCAGTTGGAACGCAAAAAAAACATGGGTTCAGGTTGGTTTAATCTGCCGGCCAC
droAna3 scaffold_13258:497112-497341 + AA-CAGGTAGTTTAGGCA-TGGCATACAATGTC-------T---------------------------AGTTAA--TAGACTACAG------TGAGGG----CTT--------TAAGAGCA--------GATGAGACTTGACA---T---AGCCGC-ATTGACGACGTCTTTAGTAACCTGATACCTTGT--------------------TAAATTGTCA---ATACATATTT------------------AATTATATA----------------------------------------------------A-TTTTTAATGTACTCATAT---TT-----ATCAATTTTAGGTAAAACGTACAAAGAGCATGGGAAGTAGTTGGTTTGATCTGCCAGCTAC
droBip1 scf7180000394860:27863-28088 + AA-CAGGTTGTTTAGGCT-TGGCATACAACGT-------CT---------------------------AGTTA--------------------ATAGA----CCA-----CTACATGAGCA--------GCTGAGGTTTGACA---C---AGCCGC-ATTGACGACGTCTTTAGTAATCTGATATCTAGT--------------------TAAATTCACT---GCA---CATCTATA--TCA-----------TTATTT------CA---------------------------------------------T-TTTTACAGTAAACCATTT-TTT-----TTTTAATTTTAGGTAATTCGAACGAAGTCCAAGGGAAGTGGTTGGTTTGATCTTCCCGCAAC
dp5 4_group4:6474084-6474326 - dps_1702 GG-CAGACAGTTTAGAGCTGGGCTAATATTCTTT-----CC------------ATATAATGAAA----CGCTAA--A--------AAGTTATTGTCGA----CCC-----ACACAGCAGTT--------GCTAAGGCTTGAGCTAGA---AGCCAC-ATTGACGACGTCTTTAGTAATCTGATAGACCAG---------------TA-GTT--------CAAA---------T-ATGAAG--TACGTATA-GCATAT--------CATATACTAAA------------------------------------------------AAA----C---T-------CATTTTTTAGGCGGAACGTGCAAAAACTAAAGGCAGCGGATGGTTCGATCTGCCAGCCAC
droPer2 scaffold_16:385826-386068 + dpe_842 GG-CAGACAGTTTAGAGCTGGGCTAATATTCTTT-----CC------------ATATAATGAAA----CGCTAA--A--------AAGTTATTGTCGA----CCC-----ACACAGCAGTT--------GCTAAGGCTTGAGCTAGA---AGCCAC-ATTGACGACGTCTTTAGTAATCTGATAGACCAG---------------TA-GTT--------CAAA---------T-ATGAAG--TACGTATA-GTATAT--------CATATACTAAA------------------------------------------------AAA----C---T-------CATTTTTTAGGCGGAACGTGCAAAAACTAAAGGCAGCGGATGGTTCGATCTGCCAGCCAC
droWil2 scf2_1100000004516:3741354-3741623 - dwi_1185 CAGTAAATAATTTAGGCCACGGCTGACAAATCTTAATCTCC------------CTCTATTG---AAAC------AT---------AAGTTATAGTCCA----CCCAA--TACACAGCAATT--------GCCGAGGCCTGACTAAGTTTAGGGCAA-TTTGACGACGTCTTTAGTAATCTGATTTCAAGT--------------------AA------------------------------------------------------------AAAAAAATTTAATTAGTAAAAAAAAATTATCCCAATTGTTT-ATTGATTGTTTATTATAT---TT----TTATACTTTCAGATTGAACGTGCCAAGACAAAAGGCAGCGGTTGGTTCGATTTGCCTGCCAC
droVir3 scaffold_12963:2429825-2430075 + dvi_10170 GA-CAAATGATTTAGGCTTGGGCGTACAATCTTT-A---TT------------TTTTATTG---AAAC------A----------GTGCTATTGTCGC----CCA-AAACACACAGCAGTA--------GCTGAGGCA-GGTTTTGT---TGCCAC-ATTGACGACGTCTTTAGTAATCTGAGTGCTCAT-CCATGCCAA-----AT-ATT--------T---------GTAT-TTAAAA--TACG---A-GCTTTC--------C----------------------------------------------------ATGTATAAACAAAT---TT----GTATACGTACAGGCCGAGCGAGCAAAGACGAAGGGCAGCGGCTGGTTTGATTTGCCGGCTAC
droMoj3 scaffold_6500:12588468-12588720 + dmo_1529 GG-CAGATGATTTAGGCGTGGGCGCACAATTTTA-A---CT------------AATCAATG---AAAC------ATA--------GTGCTATTGTCGC----CCCAA--AACACAGCAGTG--------GCCAAGGCA-GACGTTGT---TGCCAC-ATTGATGACGTCTTTAGTAATCTGAGTGCTGCTG-CT-------C-CT-A-GTAA-----------ATGAATGCACCAAA--TTA-----------TGATTT------CGTC--------------------------------------------------TACAGAAACGTAC---TT---GGTTTAATTACAGGCGGAACGTGCTAAGACGAAGGGCAGCGGCTGGTTTGATTTGCCGGCAAC
droGri2 scaffold_15126:2582327-2582579 - GC-CAAATAATTTAGGCGTGGGCTCACAATTATC-----TTATT-TT---------AAATGAAA----CGCT--AG---------GTGCTATTGTCGC----CCC-A--TGCACAGTAGTT--------ATCGAGGCAGGTGT-TGT---TGCCAC-ATTGACGACGTCTTTAGTAATCTGAGTGCTCAA-CTATGCTAA-----TT---------ATCT-------------------T--TATATATATGTATATC-------CAAATATAAAA-----------------------------------------------GAATCTTA----T-----TATTAATTACAGTCTGAACGCAGCAAGACGAAGGGCAGCGGCTGGTTTGATTTGCCAGCAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
GA-CAGATAGTTTAGTTTCTGGCTTACAGAACAC-----CAAAATAA---------AAATG---AAAC------AC---------GCACTTTTGTTGA----CCC---------AGGAGCT--------ACTTAGGGCTAAGCTATT---TGCCAT-GGTGACGACGTCTTTAGTAATCTGAATGCAACCT-AT-------ATGT-A-GTAA-----------TTTTCTGCTTTACG--GCC----------------T----------------------------------------------------GCCTCTTATTTATATTCGCTT---TCCTTTCTATCCTTTCAGATTGAACGCTCTAAGACCAAGGGCAAAGGATGGTTTAACCTCCCCGCAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................GACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................21142.0042010000000041
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................25119.0019000000000019
......................................................................................................................................................................GTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................18117.0017000000000017
.......................................................................................................................................................................TCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................17112.0012000000000012
................................................................................................GA----CCC---------AGGAGCT--------ACTTAGGGCTAAGC....................................................................................................................................................................................................................................................................26110.001001000090000
.....................................................................................................................................................................CGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................1916.00600000000006
.........................................................................................................................................................................TTTAGTAATCTGAAT...........................................................................................................................................................................................................................1514.00400000000004
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2614.00400000040000
.......................................................................................................................................................GCCAT-GGTGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................3213.00300000000003
...................................................................C------AC---------GCACTTTTGTTGA----CCC---------AGG..............................................................................................................................................................................................................................................................................................2213.00301100010000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATC................................................................................................................................................................................................................................2513.00330000000000
........................................................................................................C---------AGGAGCT--------ACTTAGGGCTAAGC....................................................................................................................................................................................................................................................................2213.00300000030000
.......................................................................................................CC---------AGGAGCT--------ACTTAGGGCTAAGC....................................................................................................................................................................................................................................................................2312.00200000020000
................................................................................................GA----CCC---------AGGAGCT--------ACTTAGGGCTAAGCT...................................................................................................................................................................................................................................................................2712.00200000020000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATCTGA.............................................................................................................................................................................................................................2812.00220000000000
........................................................................................................................................................CCAT-GGTGACGACGTCTTTAGTAATCTGAATG..........................................................................................................................................................................................................................3212.00200000000002
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2112.00200000020000
..................................................................................................................AGGAGCT--------ACTTAGGGCTAAGC....................................................................................................................................................................................................................................................................2112.00200000020000
................................................................................................GA----CCC---------AGGAGCT--------ACTTAGGG..........................................................................................................................................................................................................................................................................2012.00200000020000
..........................................................................................................................................................AT-GGTGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2912.00200000020000
..........................................................................AC---------GCACTTTTGTTGA----CCC---------AGG..............................................................................................................................................................................................................................................................................................2111.00101000000000
..................................................................................................................AGGAGCT--------ACTTAGGGCTAAG.....................................................................................................................................................................................................................................................................2011.00100000010000
.............................................AA---------AAATG---AAAC------AC---------GCACTTTTGTTGA----CC...........................................................................................................................................................................................................................................................................................................2811.00100100000000
...............................................................................................................................................TATT---TGCCAT-GGTGACGACGTCTTT.......................................................................................................................................................................................................................................2511.00100000010000
........................................................................................................C---------AGGAGCT--------ACTTAGGGCTAAGCT...................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................3011.00100000010000
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2011.00110000000000
.....................GCTTACAGAACAC-----CAAAAT......................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATCTG..............................................................................................................................................................................................................................2711.00100000010000
.............................................................................................................................................................GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2711.00110000000000
...............................................................................................................................................TATT---TGCCAT-GGTGACGACGTC..........................................................................................................................................................................................................................................2211.00101000000000
.......................................................................................................................................................GCCAT-GGTGACGACGTCTTTA......................................................................................................................................................................................................................................2111.00100000010000
......ATAGTTTAGTTTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
...............................................................................................................................................TATT---TGCCAT-GGTGACGACGT...........................................................................................................................................................................................................................................2111.00100010000000
........................................................................................................................................................CCAT-GGTGACGACGTCTTTAGTA...................................................................................................................................................................................................................................2311.00100000100000
..........................................................................................................................................TAAGCTATT---TGCCAT-GGTGACGACGTCTT........................................................................................................................................................................................................................................2911.00100000010000
.............................................................................................................................................GCTATT---TGCCAT-GGTGACGACGTCT.........................................................................................................................................................................................................................................2511.00100000010000
..................................................................AC------AC---------GCACTTTTGTTGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2411.00100000010000
.................................................................AAC------AC---------GCACTTTTGTTGA----CCC---------AG...............................................................................................................................................................................................................................................................................................2311.00100100000000
...............................................................................................................................................TATT---TGCCAT-GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2811.00100000010000
...............................................................................................................................................TATT---TGCCAT-GGTGACGACGTCTT........................................................................................................................................................................................................................................2411.00100000010000
.......................................................................................................................................................GCCAT-GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................................ACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2011.00100010000000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATCTGAA............................................................................................................................................................................................................................2911.00110000000000
.........................................................AATG---AAAC------AC---------GCACTTTTGTT...................................................................................................................................................................................................................................................................................................................2111.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAAGGGCAAAGGATGGTTTAACCT.........2411.00100000010000
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAATG..........................................................................................................................................................................................................................2711.00100000010000
...........................................................................................................................................................T-GGTGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2811.00100000010000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATCTGG.............................................................................................................................................................................................................................2811.00110000000000
.....GATAGTTTAGTTTCTGGCTTACA.......................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.......TAGTTTAGTTTCTGGCTTACAG......................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
GA-CAGATAGTTTAGTTTCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
..................................................................................................................AGGAGCT--------ACTTAGGGCTAAGCT...................................................................................................................................................................................................................................................................2211.00100000010000
................................................................................................................................................ATT---TGCCAT-GGTGACGACGTCTTTAG.....................................................................................................................................................................................................................................2611.00100000010000
...................................................................C------AC---------GCACTTTTGTTGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................GCCAT-GGTGACGACGTCTTTAGTAATCT...............................................................................................................................................................................................................................2811.00100000010000
..........................................................................AC---------GCACTTTTGTTGA----CCC---------A................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................................................................................................................................CCAT-GGTGACGACGTCTTTAGTAATCTG..............................................................................................................................................................................................................................2811.00100000010000
............................................................G---AAAC------AC---------GCACTTTTGTTGA----CC...........................................................................................................................................................................................................................................................................................................2211.00100100000000
.....GATAGTTTAGTTTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................................................................................TTGTTGA----CCC---------AGGAGCT--------ACTTA.............................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................TTGA----CCC---------AGGAGCT--------ACTTAG............................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................CCAT-GGTGACGACGTCTTTA......................................................................................................................................................................................................................................2011.00100000010000
.....GATAGTTTAGTTTCTGGCTTA.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
droEre2
GA-CAGATAGTTTAGTTTCTGGCTTACAGAACAC-----CCAACTAG---------AAATG---AAAC------AC---------GCACTATTGTCGA----CCC---------AGGAGCC--------ACTTAGGTCCAAGCTATT---TGCCAT-GGTGACGACGTCTTTAGTAATCTGAATGCAACAT-ATGTA---TCTGC-A-GTAA-----------TTTCCTGCTT-ACA--ACT----------------T----------------------------------------------------GC-TGTTATTTCTAATCGCCT---T-------CTTTTTTCAGGCTGAACGCTCCAAGACTAAGGGCAAAGGATGGTTTGATCTGCCCGCAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................26114.00141001570
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................3017.0070000007
...................................................................................................................................................................GACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2116.0062001030
...................................................................C------AC---------GCACTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2516.0060100320
..................................................................AC------AC---------GCACTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2616.0062200020
........................................................................................................................................................CCAT-GGTGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................3114.0040000004
.............................................................................................................................................................GGTGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2713.0030000030
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2213.0030010020
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2313.0030000120
......................................................................................................................................................................GTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................1812.0020000020
........................................................................................................................................................CCAT-GGTGACGACGTCTTTAGTAATCTGAATA..........................................................................................................................................................................................................................3212.0020000002
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2512.0020000020
..............................................................................................................................................................................................................................................................................................................................................................................AGACTAAGGGCAAAGGATGGTT...............2212.0020000200
........................................................................................CTATTGTCGA----CCC---------AGGAGCC--------ACTTAG............................................................................................................................................................................................................................................................................2612.0020000020
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2612.0020000002
.................................................................AAC------AC---------GCACTATTGTCGA----CCC---------AGGAG............................................................................................................................................................................................................................................................................................2612.0020100100
..............................................................................................................................................CTATT---TGCCAT-GGTGACGAC.............................................................................................................................................................................................................................................2012.0020101000
........................................................................................CTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................1912.0020000110
...............................................................................................................................................TATT---TGCCAT-GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2812.0020001010
.....................................................................................................................................................................CGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................1912.0020000002
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2412.0020000110
.......................................................................................................................................GTCCAAGCTATT---TGCCAT-GGTGAC................................................................................................................................................................................................................................................2411.0010100000
..................................................................AC------AC---------GCACTATTGTCGA----CCC---------AGG..............................................................................................................................................................................................................................................................................................2311.0011000000
.............................................................................................................................................................GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................1811.0010000010
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATCTGA.............................................................................................................................................................................................................................2811.0011000000
...........TTAGTTTCTGGCTTACAGAACAC-----C...........................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAATG..........................................................................................................................................................................................................................2611.0010000010
......................................................................................................................................................TGCCAT-GGTGACGACGTCT.........................................................................................................................................................................................................................................1911.0010000010
..........................................................................AC---------GCACTATTGTCGA----CCC---------.................................................................................................................................................................................................................................................................................................1811.0010100000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTA......................................................................................................................................................................................................................................1911.0010000010
...................................................................C------AC---------GCACTATTGTCGA----CCC---------AGG..............................................................................................................................................................................................................................................................................................2211.0011000000
.....................................................................................GCACTATTGTCGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2011.0011000000
...............................................................................................................................................TATT---TGCCAT-GGTGACGACGTCT.........................................................................................................................................................................................................................................2311.0010001000
.............................................AG---------AAATG---AAAC------AC---------GCACTATTGTCGA----C............................................................................................................................................................................................................................................................................................................2711.0010100000
..........................................................ATG---AAAC------AC---------GCACTATTGTCG..................................................................................................................................................................................................................................................................................................................2111.0011000000
...................................................................C------AC---------GCACTATTGTCGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2311.0010000100
................................................................................................................................................ATT---TGCCAT-GGTGACGAC.............................................................................................................................................................................................................................................1811.0011000000
..........................................................................AC---------GCACTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2411.0010100000
.......................................................................................................................................................GCCAT-GGTGACGACGTCT.........................................................................................................................................................................................................................................1811.0011000000
.............................................AG---------AAATG---AAAC------AC---------GCACTATTGTC...................................................................................................................................................................................................................................................................................................................2411.0010100000
..........................................................................AC---------GCACTATTGTCGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2211.0010000100
.............AGTTTCTGGCTTACAGAACAC-----CCA.........................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................................................................................................................TATT---TGCCAT-GGTGACGAC.............................................................................................................................................................................................................................................1911.0010100000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAAT.................................................................................................................................................................................................................................2411.0010000100
....................GGCTTACAGAACAC-----CCAA........................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
........................................................................................................................................................CCAT-GGTGACGACGTCTTTAGTAATCTGA.............................................................................................................................................................................................................................2911.0011000000
.......................................................................................................................................................................TCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................1711.0010000001
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAAA.................................................................................................................................................................................................................................2411.0010000100
......................................................................................................CCC---------AGGAGCC--------ACTTAGGTCCAAGC....................................................................................................................................................................................................................................................................2411.0010001000
...................................................................C------AC---------GCACTATTGTCGA----CCC---------AGGAG............................................................................................................................................................................................................................................................................................2411.0010000100
.............................................................................................................................................GCTATT---TGCCAT-GGTGACGACGTCT.........................................................................................................................................................................................................................................2511.0010000010
................................................................................................GA----CCC---------AGGAGCC--------ACTTAG............................................................................................................................................................................................................................................................................1811.0010000010
..................................................................AC------AC---------GCACTATTGTCGA----CCC---------AGGAG............................................................................................................................................................................................................................................................................................2511.0011000000
........................................................................................................................................................CCAT-GGTGACGACGTCTTT.......................................................................................................................................................................................................................................1911.0010000010
......................................................................................CACTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2111.0010000010
..........................................................................................................................................................AT-GGTGACGACGTCTTTAG.....................................................................................................................................................................................................................................1911.0010000100
.........................................................................................................................................CCAAGCTATT---TGCCAT-GGTGACGAC.............................................................................................................................................................................................................................................2511.0010100000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2211.0010100000
.......................................................................................................................................GTCCAAGCTATT---TGCCAT-GGTGACGA..............................................................................................................................................................................................................................................2611.0010001000
.........................................................AATG---AAAC------AC---------GCACTATTGTCG..................................................................................................................................................................................................................................................................................................................2211.0010000100
......ATAGTTTAGTTTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
.........................................................................................................................................................CAT-GGTGACGACGTCTTT.......................................................................................................................................................................................................................................1811.0010000010
........................................................................................................................................................CCAT-GGTGACGACGTCTT........................................................................................................................................................................................................................................1811.0011000000
.......................................................................................................................................GTCCAAGCTATT---TGCCAT-G.....................................................................................................................................................................................................................................................1911.0010000010
....................................................................................................................................................................ACGTCTTTAGTAATCTGAAT...........................................................................................................................................................................................................................2011.0010000010
....................GGCTTACAGAACAC-----CCAACTAG---------AA.........................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.......................................................................................................................................................GCCAT-GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2311.0010000010
...................................................................................................................................................................GACGTCTTTAGTAATCTGAATG..........................................................................................................................................................................................................................2211.0010000100
..................................................................AC------AC---------GCACTATTGTCGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2411.0010100000
........................................................................................................................................................CCAT-GGTGACGACGTCTTTAGTAATCT...............................................................................................................................................................................................................................2711.0010000010
.....................................................................................GCACTATTGTCGA----CCC---------AGG..............................................................................................................................................................................................................................................................................................1911.0011000000
droSec2
GA-CAGGTAGTTTAGTCTCTGTCTTACAGAACAC-----CCAAA-TG---------AAATG---AAAC------AC---------GCGCTATTGTCGA----CCC---------AGGAGCC--------ACTTAGGTCTAAGCTATA---TGCCGT-GGTGACGACGTCTTTAGTAATCTGAGCGCAACAT-AT-------------AGAGA-----------ATTCCAGCTCTATA--ACT----------------T----------------------------------------------------GC-TTTCATTTCTAATCGCCT---TC-----CTTTTTTTCAGGCTGAACGCTCCAAGACCAAGGGCAAGGGATGGTTTAATATGCCCGCCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................CGA----CCC---------AGGAGCC--------ACTTAG............................................................................................................................................................................................................................................................................1919.0090090
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2516.0060411
...................................................................C------AC---------GCGCTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2515.0050050
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2314.0040202
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2213.0030111
...............................................................................................CGA----CCC---------AGGAGCC--------ACTTA.............................................................................................................................................................................................................................................................................1812.0020020
..........................................................................AC---------GCGCTATTGTCGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2211.0010100
..................................................................................................................................................A---TGCCGT-GGTGACGACGTC..........................................................................................................................................................................................................................................1911.0010010
.........................................................................................TATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2611.0010100
...................................................................C------AC---------GCGCTATTGTCGA----CCC---------.................................................................................................................................................................................................................................................................................................1911.0010010
...........................................................................................................................................................T-GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2811.0010100
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGCGC.........................................................................................................................................................................................................................2711.0010010
..............................................................................................................................................CTATA---TGCCGT-GGTGACGACGT...........................................................................................................................................................................................................................................2211.0011000
......................................................................................................................................................................GTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................1811.0010010
..........................................................................................ATTGTCGA----CCC---------AGGAGCC--------ACTTA.............................................................................................................................................................................................................................................................................2311.0010100
.............................................................................................GTCGA----CCC---------AGGAGCC--------ACTTAG............................................................................................................................................................................................................................................................................2111.0010010
...................................................................................................................GGAGCC--------ACTTAGGTCTAGC.....................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2011.0010010
..........................................AA-TG---------AAATG---AAAC------AC---------GCGCTAA.......................................................................................................................................................................................................................................................................................................................2211.0011000
..........................................................................................................................................................................................................................................................................................................................................................................TCCAAGACCAAGGGCAAGGGA....................2111.0010010
.................................................................AAC------AC---------GCGCTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2711.0010010
..........................................................................................ATTGTCGA----CCC---------AGGAGCC--------AC................................................................................................................................................................................................................................................................................2011.0010010
...............................................................................................CGA----CCC---------AGGAGCC--------ACTTAGGTCTAAG.....................................................................................................................................................................................................................................................................2611.0010010
...............................................................................................CGA----CCC---------AGGAGCC--------ACTTAGGT..........................................................................................................................................................................................................................................................................2111.0010010
..........................................AA-TG---------AAATG---AAAC------AC---------GCGCTATTGTCG..................................................................................................................................................................................................................................................................................................................2711.0011000
..........................................................ATG---AAAC------AC---------GCGCTATTGT....................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................1911.0010001
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2411.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGATGGTTTAATATG........2011.0010010
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2111.0010010
..................................................................AC------AC---------GCGCTATTGTCGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2411.0010010
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2711.0010010
.....................TCTTACAGAACAC-----CCAAA-TG---------AAATG---AA.................................................................................................................................................................................................................................................................................................................................................2711.0010100
........................................................................................................................................................CCGT-GGTGACGACGTCTTTAGTAA..................................................................................................................................................................................................................................2411.0011000
..........................................AA-TG---------AAATG---AAAC------AC---------GCGCTATTG.....................................................................................................................................................................................................................................................................................................................2411.0010010
..................................................................AC------AC---------GCGCTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2611.0010010
........................................................................................................................................................CCGT-GGTGACGACGTCTTTAGTAATCTG..............................................................................................................................................................................................................................2811.0010100
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2611.0010010
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2011.0010001
...........TTAGTCTCTGTCTTACAGAA....................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
droSim2
GA-CAGATAGTTTAGTCTCTGGCTTACAGAACAC-----CCAAA-AG---------AAATG---AAAC------AC---------GCGCTATTGTCGA----CCC---------AGGAGCC--------ACTTAGGTCTAAGCTATA---TGCCGT-GGTGACGACGTCTTTAGTAATCTGAGCGCAACAT-AT-------------AGAAA-----------ATTCCAGCTTTATA--ACT----------------T----------------------------------------------------GC-TTTCATTTCTAATCGCCT---TC-----TTTTTTTTCAGGCTGAACGCTCCAAGACCAAGGGCAAGGGATGGTTTAATATGCCCGCCACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................GTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................181176.0017626955410000000000000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................21177.007719421330000000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................22172.00724125510000000000000
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................20168.00684421300000000000000
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................19148.00483511110000000000000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................24137.00372017000000000000000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................25127.0027212210000100000000
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................23126.0026232100000000000000
.....GATAGTTTAGTCTCTGGCTTAC........................................................................................................................................................................................................................................................................................................................................................................................22119.001993700000000000000
....AGATAGTTTAGTCTCTGGCTT..........................................................................................................................................................................................................................................................................................................................................................................................21117.0017141000001000100000
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................21116.001642800000002000000
............TAGTCTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................20111.001182100000000000000
.............................................................................................................................................................GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................27111.001146100000000000000
...........TTAGTCTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2119.00970200000000000000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2218.00814300000000000000
.......................................................................................................................................GTCTAAGCTATA---TGCCGT-GGTGACGAC.............................................................................................................................................................................................................................................2718.00804130000000000000
.....GATAGTTTAGTCTCTGGCTT..........................................................................................................................................................................................................................................................................................................................................................................................2017.00750000001001000000
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2617.00750110000000000000
........................................................................................................................................................................CTTTAGTAATCTGAGCGCA........................................................................................................................................................................................................................1915.00510400000000000000
.........................................................................................................................................................CGT-GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................3015.00500000041000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2315.00540000010000000000
...................................................................C------AC---------GCGCTATTGTCGA----CCC---------AGG..............................................................................................................................................................................................................................................................................................2214.00400400000000000000
..................................................................AC------AC---------GCGCTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2614.00401210000000000000
..........................................................................................................................................................GT-GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2913.00310020000000000000
........................................................................................................................................................CCGT-GGTGACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................3213.00300000021000000000
.....................................................................................................................................................................CGTCTTTAGTAATCTGAG............................................................................................................................................................................................................................1813.00330000000000000000
...................................................................C------AC---------GCGCTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2513.00303000000000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAG............................................................................................................................................................................................................................2113.00320000010000000000
....AGATAGTTTAGTCTCTGGCTTA.........................................................................................................................................................................................................................................................................................................................................................................................2213.00300000002010000000
.....GATAGTTTAGTCTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2713.00320100000000000000
........................................................................................................................................................CCGT-GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................3113.00300000030000000000
......ATAGTTTAGTCTCTGGCTTAC........................................................................................................................................................................................................................................................................................................................................................................................2113.00321000000000000000
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2013.00310200000000000000
.........GTTTAGTCTCTGGCTTACAGAA....................................................................................................................................................................................................................................................................................................................................................................................2213.00301110000000000000
.......................................................................................................................................................................TCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................1813.00310010000001000000
....AGATAGTTTAGTCTCTGGCTTAC........................................................................................................................................................................................................................................................................................................................................................................................2313.00301200000000000000
...............................................................................................CGA----CCC---------AGGAGCC--------ACTTAG............................................................................................................................................................................................................................................................................1912.00200000000000200000
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2412.00211000000000000000
........................................................................................................................................................................CTTTAGTAATCTGAGCGC.........................................................................................................................................................................................................................1812.00200200000000000000
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2712.00211000000000000000
........................TACAGAACAC-----CCAAA-AG---------AAAT.......................................................................................................................................................................................................................................................................................................................................................2112.00200010000000100000
.....GATAGTTTAGTCTCTGGCTTA.........................................................................................................................................................................................................................................................................................................................................................................................2112.00211000000000000000
....AGATAGTTTAGTCTCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................2012.00211000000000000000
...........................................................................................................................................................T-GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2812.00200200000000000000
....AGATAGTTTAGTCTCTGGCTTT.........................................................................................................................................................................................................................................................................................................................................................................................2212.00220000000000000000
GA-CAGATAGTTTAGTCTCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000000000
.......TAGTTTAGTCTCTGGCTTAC........................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
.........................................................................................................................................................CGT-GGTGACGACGTCTTTA......................................................................................................................................................................................................................................1912.00200000000000200000
.................................................................AAC------AC---------GCGCTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2712.00202000000000000000
......ATAGTTTAGTCTCTGGCTTACAGAA....................................................................................................................................................................................................................................................................................................................................................................................2512.00200020000000000000
.....GATAGTTTAGTCTCTGGCTTACAGAA....................................................................................................................................................................................................................................................................................................................................................................................2612.00200020000000000000
.......TAGTTTAGTCTCTGGCTTACAGA.....................................................................................................................................................................................................................................................................................................................................................................................2312.00200000002000000000
.............................................................................................GTCGA----CCC---------AGGAGCC--------ACTTA.............................................................................................................................................................................................................................................................................2011.00110000000000000000
...................................................................C------AC---------GCGCTATTGTCGA----CC...........................................................................................................................................................................................................................................................................................................1811.00110000000000000000
....AGATAGTTTAGTCTCTGGCTTTT........................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.......TAGTTTAGTCTCTGGCTTACAG......................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...................................................................C------AC---------GCGCTATTGTCGA----CCC---------.................................................................................................................................................................................................................................................................................................1911.00100100000000000000
......................................................................................................................................................TGCCGT-GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2411.00100010000000000000
....................GGCTTACAGAACAC-----CCAAA-AG---------AAATG---A..................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.......TAGTTTAGTCTCTGGCTTACA.......................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
............TAGTCTCTGGCTTACAGAA....................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
.........................................................................................TATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................1811.00101000000000000000
................................................................................................GA----CCC---------AGGAGCC--------ACTTAG............................................................................................................................................................................................................................................................................1811.00100010000000000000
.........................................................................................................................................................CGT-GGTGACGACGTCTTTAGTAATCTGAG............................................................................................................................................................................................................................2911.00100000010000000000
..................................................................AC------AC---------GCGCTATTGTCGA----CC...........................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.....................GCTTACAGAACAC-----CCAAA-AG---------AA.........................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
GA-CAGATAGTTTAGTCTCTGGCTTAC........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000100000000000
.................................................................AAC------AC---------GCGCTATTGTCGA----CCC---------AGG..............................................................................................................................................................................................................................................................................................2411.00101000000000000000
.......................................................................................GCTATTGTCGA----CCC---------AGGAGC...........................................................................................................................................................................................................................................................................................2011.00110000000000000000
..................................................................AC------AC---------GCGCTATTGTCGA----CCC---------AGGAG............................................................................................................................................................................................................................................................................................2511.00101000000000000000
..........................................................................AC---------GCGCTATTGTCGA----CCC---------AG...............................................................................................................................................................................................................................................................................................2011.00110000000000000000
.....................GCTTACAGAACAC-----CCAAA-AG---------AAATG---AA.................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...................................................................C------AC---------GCGCTATTGTCGA----CCC---------AGGAGCC--------..................................................................................................................................................................................................................................................................................2611.00101000000000000000
......ATAGTTTAGTCTCTGGCTTACA.......................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2611.00100100000000000000
........................................................................................................C---------AGGAGCC--------ACTTAGGTCTAAGC....................................................................................................................................................................................................................................................................2211.00100000000000100000
...................................................................C------AC---------GCGCTATTGTCGA----CCC---------AGGA.............................................................................................................................................................................................................................................................................................2311.00100010000000000000
.........................................................................................................................................................CGT-GGTGACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................3111.00100000010000000000
..................................................................AC------AC---------GCGCTATTGTCGA----CCC---------AGGAGG...........................................................................................................................................................................................................................................................................................2611.00101000000000000000
.......TAGTTTAGTCTCTGGCTTA.........................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.A-CAGATAGTTTAGTCTCTG..............................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.....................................................................................................................................AGGTCTAAGCTATA---TGCCGT-GGTGACGAC.............................................................................................................................................................................................................................................2911.00100010000000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2211.00100100000000000000
...................................................................................................................GGAGCC--------ACTTAGGTCTAAGCT...................................................................................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................................................................CTAAGCTATA---TGCCGT-GGTGACGAC.............................................................................................................................................................................................................................................2511.00100010000000000000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAGCGC.........................................................................................................................................................................................................................2611.00101000000000000000
..........TTTAGTCTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
............TAGTCTCTGGCTTACAGAACAC-----C...........................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.............................AACAC-----CCAAA-AG---------AAATG---AAAC------A........................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.........GTTTAGTCTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
......................................................................................................................................................................GTCTTTAGTAATCTGAGCGA.........................................................................................................................................................................................................................2011.00100100000000000000
......ATAGTTTAGTCTCTGGCTTACAGAACAC-----C...........................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
...............................................................................................................................................TATA---TGCCGT-GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2811.00100010000000000000
............................................................G---AAAC------AC---------GCGCTATTGTCGA----C............................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...........................................A-AG---------AAATG---AAAC------AC---------GCGCT.........................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2111.00101000000000000000
.........................................................................................TATTGTCGA----CCC---------AGGAGCC--------..................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................................................................................................................................................................TTTAGTAATCTGAGCGCAAC......................................................................................................................................................................................................................2011.00110000000000000000
..........TTTAGTCTCTGGCTTACA.......................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.......................................................................................................................................GTCTAAGCTATA---TGCCGT-GGTG..................................................................................................................................................................................................................................................2211.00100010000000000000
........................................................................................................................C--------ACTTAGGTCTAAGCTATA---TGCCGT-GGT...................................................................................................................................................................................................................................................2811.00100010000000000000
...............................................................................................................................................TATA---TGCCGT-GGTGACGAC.............................................................................................................................................................................................................................................1911.00101000000000000000
....................................................................................................................................................................ACGTCTTTAGTAATCTGA.............................................................................................................................................................................................................................1811.00100100000000000000
...........................................................................C---------GCGCTATTGTCGA----CCC---------AGGAGCC--------..................................................................................................................................................................................................................................................................................2411.00100100000000000000
.......................................................................................GCTATTGTCGA----CCC---------AGGAGCC--------ACTT..............................................................................................................................................................................................................................................................................2511.00100010000000000000
.......TAGTTTAGTCTCTGGCTTACAGAAC...................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
......ATAGTTTAGTCTCTGGCTTAA........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................AG---------AAATG---AAAC------AC---------GCGCT.........................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.......................................................................................................................................GTCTAAGCTATA---TGCCGT-GAC...................................................................................................................................................................................................................................................2111.00100100000000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGA.............................................................................................................................................................................................................................2011.00110000000000000000
.....GATAGTTTAGTCTCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
....................................................................................................................................................................ACGTCTTTAGTAATCTGAG............................................................................................................................................................................................................................1911.00101000000000000000
.........GTTTAGTCTCTGGCTTA.........................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..............................................G---------AAATG---AAAC------AC---------GCGCTATTGTCGA----.............................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.....GATAGTTTAGTCTCTGGC............................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
................................................................................................................................................ATA---TGCCGT-GGTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2711.00100010000000000000
.........GTTTAGTCTCTGGCTTACAGAACAC-----CC..........................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.........GTTTAGTCTCTGGCTTAC........................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAG............................................................................................................................................................................................................................2311.00110000000000000000
....................GGCTTACAGAACAC-----CCAAA-......................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
dm3
GA-CAGATAGTTTAGTCTCTGGTTTACAGAACAC-----CCAAATGG---------AAATG---AAAC------AC---------GCGCTTTTGTCGA----CCC---------AGGAGCC--------AGTTAGGTCTAAGCTGTT---TGTCAT-GGTGACGACGTCTTTAGTAATCTGAGCGCAACAT-AT-------------TGGAA-----------ATTTCAGACC-CTA--CCT----------------T----------------------------------------------------GC-TTTTATTTTTAATCGCCT---TC------CTTTTTTCAGGCTGAACGCTCAAAGACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................22145.00450000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205000000000000000010002000000000000000100000000000000000000000100000000000000000002100411000000000000000001000000000000110000000000000000000000001110000001000010010001002000001010210001300200
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................23144.00440000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000003000203000000000000000000000000000000100000000000000000000100001011200300000000000301002100000001801121000000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................25139.00390000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000100003000000000000002000111000000000000000000000000000000000000000000000000001000001101000010000000000001000010011000720023000100
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................20137.00370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120001000000000000000000000000000000000000000000000010000001002615900200200000000000000001000000000000000000000000000000000000000000000000000000001001000000000000000001000000000000000000000000
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................20136.00360000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000206000000000000000000000000000000000000000000000000000100000001000510000000000110001100004000100000000000000000000000000000100000000110000000010000000000000001010000000000000000001000100100000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................24133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000010000000000000050000000000000010000000000100000000020000000000000000001000100000000000000000000000100000000010000000001000000000010000010100100121010100001000000010001200000001000
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................26126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000200000000000000000100100000001000200000000000000000000000010000000000000000000010000000020000000010110000000000000000000000000600211000000
.........................................................................................................................................................CAT-GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................30125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000001000010510010000000000000000000000000012100000000040100001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................21125.00250000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000009000000000000000000001000000000000000000000000000000000000001000100030000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000100000100000000010200000000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................21119.00190000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000200000000000000000000000000000000000000000000000000010000000000400000000200000000002001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100101000
......ATAGTTTAGTCTCTGGTTTACAGAA....................................................................................................................................................................................................................................................................................................................................................................................25118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000200000000000001000000000000000000000000000010002000005000000000000000000000000000000000000000000000000000000000000000000300000000100000000000000000100000000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................22118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000001000000000000000000000000000000000010000000000000010000000000000000020220000000000100000000000002000000000000000000100000000000010000000000000000000100000001000000000000000000000000000000000
......................................................................................................................................................................GTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................18117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000500200000000000001000000000000000000002000000000000000000000000000000000000000000000000011000000001010000000000000000000000000000
...............................................................................................CGA----CCC---------AGGAGCC--------AGTTAGGT..........................................................................................................................................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000001000000000000000004400000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................23116.00160000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000002000422000000000000000000000000000000000000000000000000000000001000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................19115.00150000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000010000000000100010000000000000000100000000000010000100000001000000000000000000000000000000000000000001010000000000200000001000
.............................................................................................................................................................GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................27114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000003001013000000000000000000000000000000000000000000000000000000000000000000000000000120000100000000001000000000
..................................................................................................................AGGAGCC--------AGTTAGGTCTAAGC....................................................................................................................................................................................................................................................................21113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000000050000000000100000000000000000000000000000000000000000000000001000000000000000000001000000010000000000000000000000000
..............................................................................................................................................................GTGACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................27113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000100000000000000000000000000000000100001000000000000000010000000210000000
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................24113.00130000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030010000000000000000001000000000000000000000000001000000000000000000000000000000000000000111000000000000000000000000010100000
.............................................................................................................................................................................GTAATCTGAGCGCAACAT-AT-------------TGG.................................................................................................................................................................................................23113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000101000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000001000000100000000101000100010000000100000000
...............................................................................................CGA----CCC---------AGGAGCC--------AGTTAG............................................................................................................................................................................................................................................................................19111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000020000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000001101000000000000000000000000000
...........................................................................................................................................................T-GGTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................28111.00110000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010012100000
.............................................................................................................................................................................GTAATCTGAGCGCAACAT-AT-------------TG..................................................................................................................................................................................................22110.00100000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100010000000000000000000002010000000000000000010000000000000000000000
...............................................................................................CGA----CCC---------AGGAGCC--------AGTTA.............................................................................................................................................................................................................................................................................18110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011000000000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000010000010010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000
...........................................................TG---AAAC------AC---------GCGCTTTTGTCGA----C............................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ATGG---------AAATG---AAAC------AC---------GCGCTTTTGTCG..................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......TAGTTTAGTCTCTGGTTTACAGAA....................................................................................................................................................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000200000020000001000000000000000000000
..........................................................................................................................................TAAGCTGTT---TGTCAT-GGTGAC................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................AT-GGTGACGACGTCTTTAGTAATCTG..............................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000400001000
..................................................................................................................AGGAGCC--------AGTTAGGTCTAAGCTGT.................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000000000000000000000000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAGCG..........................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000200000
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droEug1
GT-CAGATAACTAAGTAACTAGCCTACACAATAT-----CATCTTAA---------ATGTT---ATGA------AA---------GAACTGTGGTCTA-------------------AATT--------AATTATGTCTGAGAAAGT---TGCCAT-ATTGACGACGACTTTAGTAATCTGAAAACAAGA---------------T-GGGCA-----------ACTTCAGCAT------------------TTATACTTT----------------------------------------------------A-TTCCTTTCTTAATCGTCT-----------TAATTTTTAGGCTAAAAGCTCCAAAACTAAGGGAGGAGATTGGGCTTACTTTCCTGCCTCSizeHit CountTotal NormTotal
No Reads
droBia1
GA-CTGACAACTTAGGCCATGGCTTACAGAACAC-----AAACCTCA---------AAATG---AAGC------AC---------AGTGGATTGTCGA----CGC---------AGGATCC--------ACTTAGGTCTGGG----T---TGCC---ATTGACGACGTCTTTAGTAATCTGACAGCATGA-----------------CGGCA-----------ACTCCAGCTG------------------ACGTTTTTA----------------------------------------------------A-GTCCTTTTCTAATCCTA----T-----CTTATATCTCAGGCTGAACGCGCCAAATCCAAGGGCAAGGGCTGGTATGATTTGCCCGCGACSizeHit CountTotal NormTotal
No Reads
droTak1
AA-CTGGTAATTTAGGCTATGGCTTACAAAACAT-----TACCATCA---------AAATG---AAGC------AA------------ATATTGTCGA----CCC---------AGGAGAC--------ACTTAGGTCTGAGCTAGT---TGCCCC-ATTGACGACGTCTTTAGTAATCTGAGAAAAATA---------------T-AGATA-----------TAACCAGCTA------------------TTGTATTTA---------------------------------------------------AT-TTCCTTTTCTAATCGCCT---TT-----CTGTTTTTCAGGTTGAACGCGCTCGAACCAAAGGAAAAGGTTGGTTTGATTTGCCCGCCACSizeHit CountTotal NormTotal
No Reads
droEle1
GA-CAGATAAATTTTGCTCTGGCATACAGATAAT-----TTACCAAA-----------A-T---AAGC------TA---------AGACTATTGTCAAAACGCCA---------AGGAGCT--------GCTTAGGCCTGAGCTATT---TGCCAA-ATTGACGACGTCTTTAGTAATCTGAGAACAGGA---------------C-CGTCA-----------TTTTCAGCTC------------------ACTTGTTCTATTTCCG---------------------------------------------------GATTCTAATCCTGT---T-------TGTTTTTCAGACTGAACGCGCAAAAACCAAGGGGAGCGGATGGTTTCATTTGCCCGCCACSizeHit CountTotal NormTotal
No Reads
droRho1
GA-CAGATAATTTTGGCTCTGGCTTACAGATCTTAA---TCAAA-AG---------CAAAG---AAAC------AA---------TA-GT-ATGTCGGTACACCT---------AG-------------GCCTAGGCCTGAGCTAGT---TGCCGT-ATTGACGACGTCTTTAGTAATCTGAAAGCAGAA---------------A-ACCCA-----------TCCCCAGCTG------------------ACAGATTCT---------------------------------------------------AT-TTTCTTTTCTAATCGTCT---T-------CATTTTTCAGGCTGAACGCGGTAAAACCAAGGGGAGCGGCTGGTTTAATTTGCCCGCCACSizeHit CountTotal NormTotal
No Reads
droFic1
GA-AAGATAATTAAGGCCATGGCTTACAGACCAA-----CAAC---A---------AAATG---AAAC------AG---------CGACTGTTATCCGTCCACTT-----ACCCCAGAGCTATGTGTATATTTACTTCTGAATCAGG---TGCCAC-ATTGACGACTTCTTTAGTAATCTGAAAGAATTT---------------CA-GACA--------TTT---------T-TTTAAT--TACATTCT-TTGTAA--------TTTTTAACAAT------------------------------------------------ACA----TTTCT-----TATTTTTTTCAGACTGAACGCGCCAAAACCGCGGGATCTGGCTGGTTTGATTTGTCCGCAACSizeHit CountTotal NormTotal
No Reads
droKik1
GA-CAGACTCCTTAAACTCGGGCTTACAAAACTT-----TTACATACATATGTATATAATGAAA----CCA---TA---------AAGCTAAAGTCGA----CAA-----GAGCAGGAGGT--------GCTTAGGCCTAAGCTGCA---TGTTTTATTTGATGACGTCTTTAGTAATCTGATAGTATGAT-GTTGC---CCTTT-A-GTT--------AAGAAATCTTGTTT-GTA--ACTTAGA------CAATT--------T------------------------------------------------TTATATTTTGAAACTTT----T-----TAAATTTTTCAGTTGGAACGCAAAAAAAACATGGGTTCAGGTTGGTTTAATCTGCCGGCCACSizeHit CountTotal NormTotal
No Reads
droAna3
AA-CAGGTAGTTTAGGCA-TGGCATACAATGTC-------T---------------------------AGTTAA--TAGACTACAG------TGAGGG----CTT--------TAAGAGCA--------GATGAGACTTGACA---T---AGCCGC-ATTGACGACGTCTTTAGTAACCTGATACCTTGT--------------------TAAATTGTCA---ATACATATTT------------------AATTATATA----------------------------------------------------A-TTTTTAATGTACTCATAT---TT-----ATCAATTTTAGGTAAAACGTACAAAGAGCATGGGAAGTAGTTGGTTTGATCTGCCAGCTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................GACGACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................24126.00262010221
.............................................................................................................................................................ATTGACGACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................27126.00265100614
.................................................................................................................................................................ACGACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................23121.00211000119
...................................................................................................................................................................GACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................21121.00211200117
...............................................................................................................................................................TGACGACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................25116.00162000014
.....................................................................................................................................................................CGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................19114.00141000112
..................................................................................................................................................................CGACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................22112.00120000111
....................................................................................................................................................................ACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................20111.00110100010
..............................................................................................................................................................TTGACGACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................26110.0010110008
......................................................................................................................................................................GTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................1817.007000007
...........................................................................................................................................................C-ATTGACGACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................2815.005100004
........AGTTTAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................2213.003110001
......GTAGTTTAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................2413.003210000
................................................................................CTACAG------TGAGGG----CTT--------TAAGAGCA--------..................................................................................................................................................................................................................................................................................2313.003000003
..............................................................................GACTACAG------TGAGGG----CTT--------TAAGAGC...........................................................................................................................................................................................................................................................................................2413.003020010
.......TAGTTTAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................2313.003000003
......................................................................................................................................GACTTGACA---T---AGCCGC-ATTGACGACGT...........................................................................................................................................................................................................................................2713.003020010
.........GTTTAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................2112.002010001
......................................................................................................................................GACTTGACA---T---AGCCGC-ATTGACGAC.............................................................................................................................................................................................................................................2512.002020000
.................................................................................................G----CTT--------TAAGAGCA--------GATGAGACTTGACA---T---.............................................................................................................................................................................................................................................................2712.002000002
.........................................................................A--TAGACTACAG------TGAGGG----CTT--------TAAGAGC...........................................................................................................................................................................................................................................................................................2712.002000011
............TAGGCA-TGGCATACAATGT...................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
....................................................................................AG------TGAGGG----CTT--------TAAGAGCA--------..................................................................................................................................................................................................................................................................................1912.002000002
.....................................................................GTTAA--TAGACTACAG------TGAGG..................................................................................................................................................................................................................................................................................................................2012.002020000
........AGTTTAGGCA-TGGCATACAATGT...................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
.............................................................................AGACTACAG------TGAGGG----CTT--------TAAGAGC...........................................................................................................................................................................................................................................................................................2512.002010010
....AGGTAGTTTAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
.....................................................................GTTAA--TAGACTACAG------TGAGGG----CT...........................................................................................................................................................................................................................................................................................................2312.002100010
.....GGTAGTTTAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................2512.002000002
......................................................................................................................................GACTTGACA---T---AGCCGC-ATT...................................................................................................................................................................................................................................................1912.002011000
.............................................................................................................................................................ATTGACGACGTCTTTAGTAACCTGA.............................................................................................................................................................................................................................2511.001010000
........................................................................................................T--------TAAGAGCA--------GATGAGACTTGACA---T---.............................................................................................................................................................................................................................................................2411.001001000
........................................................................................................................A--------GATGAGACTTGACA---T---AGC..........................................................................................................................................................................................................................................................1911.001010000
..........TTTAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................GTAACCTGATACCTTGT--------------------TAAATTGT.........................................................................................................................................................................................2511.001100000
..............................................................................................................................................A---T---AGCCGC-ATTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2611.001010000
.A-CAGGTAGTTTAGGCA-TGGC............................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.........................................................................................................................................................CGC-ATTGACGACGTCTTTAGC....................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................GC-ATTGACGACGTCTTTAGTAACCTGATA...........................................................................................................................................................................................................................2911.001010000
..............................................................................GACTACAG------TGAGGG----CTT--------TAAGAGCA--------..................................................................................................................................................................................................................................................................................2511.001010000
..............................................................................................................................................................................TAACCTGATACCTTGT--------------------TAAATTG..........................................................................................................................................................................................2311.001100000
.................................................................................................G----CTT--------TAAGAGCA--------GATGAGACTTGAC.....................................................................................................................................................................................................................................................................2511.001000001
............................................................................................................................................................................AGTAACCTGATACCTTGT--------------------TA...............................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................AAACGTACAAAGAGCATGGGAAGTA......................2511.001000010
..............................................................................................................................................A---T---AGCCGC-ATTGACGACGTCTTTAGC....................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................A---T---AGCCGC-ATTGACGACGTCT.........................................................................................................................................................................................................................................2111.001100000
....................................................................................................................GAGCA--------GATGAGACTTGACA---T---AGC..........................................................................................................................................................................................................................................................2311.001010000
................................C-------T---------------------------AGTTAA--TAGACTACAG------TGAGGG----CTT--------..................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................................................................................................AGCCGC-ATTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2411.001010000
........................................................................................................T--------TAAGAGCA--------GATGAGACTTGACA---T---AGCC.........................................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................................AGCCGC-ATTGACGACGTCTTTAGTAAC.................................................................................................................................................................................................................................2711.001010000
......GTAGTTTAGGCA-TGGCATACAATGT...................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................CGACGTCTTTAGTAACCTGATACC.........................................................................................................................................................................................................................2411.001010000
..............................................................................................................................................A---T---AGCCGC-ATTGACGACGC...........................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................GACTTGACA---T---AGCCGC-ATTGAC................................................................................................................................................................................................................................................2211.001010000
.......................ATACAATGTC-------T---------------------------AGTTAA--T......................................................................................................................................................................................................................................................................................................................................1811.001001000
...................TGGCATACAATGTC-------T---------------------------AGTTAA--TAGA...................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................GTTAA--TAGACTACAG------TGAGGG----C............................................................................................................................................................................................................................................................................................................2211.001010000
........................................................................................................T--------TAAGAGCA--------GATGAGACTTGACA---T---AGC..........................................................................................................................................................................................................................................................2711.001000010
.......................................................................................................................................................GCCGC-ATTGACGACGTCT.........................................................................................................................................................................................................................................1811.001100000
...CAGGTAGTTTAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........TTTAGGCA-TGGCATACAATGT...................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................AGACTACAG------TGAGGG----CTT--------..................................................................................................................................................................................................................................................................................................1811.001001000
.............................................................................................................................................................................GTAACCTGATACCTTGT--------------------TAAATT...........................................................................................................................................................................................2311.001100000
.......................................................................................................................................................GCCGC-ATTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2311.001010000
.................................................................................TACAG------TGAGGG----CTT--------TAAGAGCA--------GATGAA............................................................................................................................................................................................................................................................................2811.001100000
.............................TGTC-------T---------------------------AGTTAA--TAGACTACAG------TGAGGG----C............................................................................................................................................................................................................................................................................................................2811.001010000
...............................................................................ACTACAG------TGAGGG----CTT--------TAAGAGCA--------G.................................................................................................................................................................................................................................................................................2511.001000010
....................................................................AGTTAA--TAGACTACAG------TGAGGG----CT...........................................................................................................................................................................................................................................................................................................2411.001000010
......GTAGTTTAGGCA-TGGCATAC........................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............TAGGCA-TGGCATACAATG....................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
................................................................................CTACAG------TGAGGG----CTT--------TAA...............................................................................................................................................................................................................................................................................................1811.001000001
...........TTAGGCA-TGGCATACAATGT...................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....................................................................................................................AGCA--------GATGAGACTTGACA---T---A............................................................................................................................................................................................................................................................2011.001000010
.......................................................................................................TT--------TAAGAGCA--------GATGAGACTT........................................................................................................................................................................................................................................................................2011.001000001
...............................................................................................GGG----CTT--------TAAGAGCA--------GATGAGACTTGAC.....................................................................................................................................................................................................................................................................2711.001010000
.....................................................................................................................AGCA--------GATGAGACTTGACA---T---AGC..........................................................................................................................................................................................................................................................2211.001010000
........................................................................................................................................................CCGC-ATTGACGACGTCTTTA......................................................................................................................................................................................................................................2011.001010000
.............................................................................AGACTACAG------TGAGGG----CTT--------TAAGAGCA--------..................................................................................................................................................................................................................................................................................2611.001010000
................................................................................CTACAG------TGAGGG----CTT--------TAAGAGCA--------GAT...............................................................................................................................................................................................................................................................................2611.001000001
.............................................................................................................................................................................GTAACCTGATACCTTGT--------------------TAAATTG..........................................................................................................................................................................................2411.001100000
.........................................................................................................................................................CGC-ATTGACGACGTCTTC.......................................................................................................................................................................................................................................1811.001010000
................................................................................CTACAG------TGAGGG----CTT--------TAAGAGCA--------GATG..............................................................................................................................................................................................................................................................................2711.001100000
..............................................................................GACTACAG------TGAGGG----CTT--------TAAGAGCA--------GA................................................................................................................................................................................................................................................................................2711.001000001
droBip1
AA-CAGGTTGTTTAGGCT-TGGCATACAACGT-------CT---------------------------AGTTA--------------------ATAGA----CCA-----CTACATGAGCA--------GCTGAGGTTTGACA---C---AGCCGC-ATTGACGACGTCTTTAGTAATCTGATATCTAGT--------------------TAAATTCACT---GCA---CATCTATA--TCA-----------TTATTT------CA---------------------------------------------T-TTTTACAGTAAACCATTT-TTT-----TTTTAATTTTAGGTAATTCGAACGAAGTCCAAGGGAAGTGGTTGGTTTGATCTTCCCGCAACSizeHit CountTotal NormTotal
No Reads
dp5
GG-CAGACAGTTTAGAGCTGGGCTAATATTCTTT-----CC------------ATATAATGAAA----CGCTAA--A--------AAGTTATTGTCGA----CCC-----ACACAGCAGTT--------GCTAAGGCTTGAGCTAGA---AGCCAC-ATTGACGACGTCTTTAGTAATCTGATAGACCAG---------------TA-GTT--------CAAA---------T-ATGAAG--TACGTATA-GCATAT--------CATATACTAAA------------------------------------------------AAA----C---T-------CATTTTTTAGGCGGAACGTGCAAAAACTAAAGGCAGCGGATGGTTCGATCTGCCAGCCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................GACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................21110.00100810010000
......................................................................................................................................................................GTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................1815.0050010200002
....................................................................................................................................................................ACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2015.0051200100001
..........................................................................................ATTGTCGA----CCC-----ACACAGCAGTT--------..................................................................................................................................................................................................................................................................................2212.0020010100000
.............................................................................................................................................GCTAGA---AGCCAC-ATTGACGAC.............................................................................................................................................................................................................................................2112.0020020000000
..........................................................................................................................................................AC-ATTGACGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2912.0020011000000
.............................................................................................................................................................ATTGACGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2712.0020000001001
...................GGGCTAATATTCTTT-----CC------------ATAT..........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................ATTGTCGA----CCC-----ACACAGCAGT...........................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................GCTAGA---AGCCAC-ATTGACGACGT...........................................................................................................................................................................................................................................2311.0010010000000
...................................................................................................................................................................GACGTCTTTAGTAATCTGATAA..........................................................................................................................................................................................................................2211.0010100000000
................GCTGGGCTAATATTCTTT-----C...........................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...............................................................................................CGA----CCC-----ACACAGCAGTT--------GCTA..............................................................................................................................................................................................................................................................................2111.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................TTTTAGGCGGAACGTGCAAAA...................................2111.0010100000000
.................................................................................................................................GCTAAGGCTTGAGCTAGA---AGC..........................................................................................................................................................................................................................................................2111.0010010000000
.......CAGTTTAGAGCTGGGCTAATA.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
............................................................................A--------AAGTTATTGTCGA----CCC-----ACACAGC..............................................................................................................................................................................................................................................................................................2411.0010000100000
......................................................................................................................................................................GTCTTTAGTAATCTGATAG..........................................................................................................................................................................................................................1911.0010010000000
.............................................................................................GTCGA----CCC-----ACACAGCAGT...........................................................................................................................................................................................................................................................................................1811.0010100000000
......................................................................................AGTTATTGTCGA----CCC-----ACACAGCA.............................................................................................................................................................................................................................................................................................2311.0010010000000
......ACAGTTTAGAGCTGGGCTAATATTCTTC-----............................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
...............................................................................................CGA----CCC-----ACACAGCAGTT--------GCTAAGGCT.........................................................................................................................................................................................................................................................................2611.0010010000000
...............................................................................................................CACAGCAGTT--------GCTAAGGCTTGA......................................................................................................................................................................................................................................................................2211.0010000100000
....................................................................CGCTAA--A--------AAGTTATTGTCGA----CC...........................................................................................................................................................................................................................................................................................................2211.0010010000000
..............................CTTT-----CC------------ATATAATGAAA----CGC............................................................................................................................................................................................................................................................................................................................................2011.0010000000010
.............................................................................................................................................GCTAGA---AGCCAC-ATTGACGACG............................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................GTAATCTGATAGACCAG---------------TA-GTT--------........................................................................................................................................................................................2211.0010100000000
......ACAGTTTAGAGCTGGGCTAATATTC....................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.................................................................................................................CAGCAGTT--------GCTAAGGCTTGAGCT...................................................................................................................................................................................................................................................................2311.0010000100000
.........................................................................................TATTGTCGA----CCC-----ACACAGCAGTT--------..................................................................................................................................................................................................................................................................................2311.0010010000000
.....................................................................................................................................................................CGTCTTTAGTAATCTGATAG..........................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................CGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................1911.0010000100000
..............................................................................................................................................CTAGA---AGCCAC-ATTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2911.0010010000000
droPer2
GG-CAGACAGTTTAGAGCTGGGCTAATATTCTTT-----CC------------ATATAATGAAA----CGCTAA--A--------AAGTTATTGTCGA----CCC-----ACACAGCAGTT--------GCTAAGGCTTGAGCTAGA---AGCCAC-ATTGACGACGTCTTTAGTAATCTGATAGACCAG---------------TA-GTT--------CAAA---------T-ATGAAG--TACGTATA-GTATAT--------CATATACTAAA------------------------------------------------AAA----C---T-------CATTTTTTAGGCGGAACGTGCAAAAACTAAAGGCAGCGGATGGTTCGATCTGCCAGCCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................GTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................181506.0050649916000
...................................................................................................................................................................GACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................21124.00242400000
.....................................................................................................................................................................CGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................19110.0010802000
....................................................................................................................................................................ACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................20110.00101000000
.............................................................................................................................................................ATTGACGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2718.008710000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2217.007600100
..............................................................AA----CGCTAA--A--------AAGTTATTGTCGA----CCC-----.....................................................................................................................................................................................................................................................................................................2513.003300000
.....................................................................................................................................................................CGTCTTTAGTAATCTGATAG..........................................................................................................................................................................................................................2013.003201000
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2313.003300000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2413.003010101
..............................................................................................................................................CTAGA---AGCCAC-ATTGACGACGT...........................................................................................................................................................................................................................................2213.003120000
..............................................................................................................................................CTAGA---AGCCAC-ATTGACGAC.............................................................................................................................................................................................................................................2012.002200000
..........................................................................................ATTGTCGA----CCC-----ACACAGCA.............................................................................................................................................................................................................................................................................................1912.002002000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2512.002200000
.............................................................................................................................................GCTAGA---AGCCAC-ATTGACGAC.............................................................................................................................................................................................................................................2112.002002000
..........................................................................................ATTGTCGA----CCC-----ACACAGCAGT...........................................................................................................................................................................................................................................................................................2112.002200000
.......................................................................................................................................................................TCTTTAGTAATCTGATAG..........................................................................................................................................................................................................................1812.002200000
........................................................................AA--A--------AAGTTATTGTCGA----CC...........................................................................................................................................................................................................................................................................................................1812.002200000
...............................................................A----CGCTAA--A--------AAGTTATTGTCGA----CC...........................................................................................................................................................................................................................................................................................................2312.002200000
..........................................................................................................................................................AC-ATTGACGACGTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................2912.002200000
..........................................................................................................................................................................TTAGTAATCTGATAGACC.......................................................................................................................................................................................................................1812.002200000
...............................................................A----CGCTAA--A--------AAGTTATTGTCGA----CCC-----.....................................................................................................................................................................................................................................................................................................2412.002200000
..........................................................................................ATTGTCGA----CCC-----ACACAGCAGTT--------..................................................................................................................................................................................................................................................................................2211.001001000
......................................................................................................................................................................GTCTTTAGTAATCTGATAG..........................................................................................................................................................................................................................1911.001001000
.....................................................................GCTAA--A--------AAGTTATTGTCGA----CC...........................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................A--A--------AAGTTATTGTCGA----CCC-----ACACAGCAG............................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................GTCTTTAGTAATCTGATG...........................................................................................................................................................................................................................1811.001100000
.............................................................................................................................................................................GTAATCTGATAGACCAG---------------TA-GTT--------........................................................................................................................................................................................2211.001010000
...............................................................................................CGA----CCC-----ACACAGCAGTT--------GCT...............................................................................................................................................................................................................................................................................2011.001001000
......................................................................................................................................................AGCCAC-ATTGACGACGTCTTTA......................................................................................................................................................................................................................................2211.001001000
....................................................................CGCTAA--A--------AAGTTATTGTCGA----CCC-----.....................................................................................................................................................................................................................................................................................................2311.001100000
........AGTTTAGAGCTGGGCTAATATTC....................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
..............................................................................................TCGA----CCC-----ACACAGCAGTT--------GCTA..............................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................TATTGTCGA----CCC-----ACACAGCAGTT--------G.................................................................................................................................................................................................................................................................................2411.001100000
.....................................................................GCTAA--A--------AAGTTATTGTCGA----CCC-----.....................................................................................................................................................................................................................................................................................................2211.001100000
......................................................................................................................GTT--------GCTAAGGCTTGAGCTAGA---.............................................................................................................................................................................................................................................................2111.001000001
.........................................................................................TATTGTCGA----CCC-----ACACAGCA.............................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................GCTAGA---AGCCAC-ATTGACGACGT...........................................................................................................................................................................................................................................2311.001001000
......................................................................................................................................................................GTCTTTAGTAATCTGATAGA.........................................................................................................................................................................................................................2011.001100000
....................................................................CGCTAA--A--------AAGTTATTGTCGA----CC...........................................................................................................................................................................................................................................................................................................2211.001100000
droWil2
CAGTAAATAATTTAGGCCACGGCTGACAAATCTTAATCTCC------------CTCTATTG---AAAC------AT---------AAGTTATAGTCCA----CCCAA--TACACAGCAATT--------GCCGAGGCCTGACTAAGTTTAGGGCAA-TTTGACGACGTCTTTAGTAATCTGATTTCAAGT--------------------AA------------------------------------------------------------AAAAAAATTTAATTAGTAAAAAAAAATTATCCCAATTGTTT-ATTGATTGTTTATTATAT---TT----TTATACTTTCAGATTGAACGTGCCAAGACAAAAGGCAGCGGTTGGTTCGATTTGCCTGCCACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................GACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................21110.001032410
..................................................................................................................................................................CGACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2218.00811213
................................................................................................................................................................GACGACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2415.00521002
....................................................................................................................................................................ACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2014.00420002
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2514.00410003
........AATTTAGGCCACGGCTGACA.......................................................................................................................................................................................................................................................................................................................................................................................2013.00301020
.............................................................................................................................................................TTTGACGACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2713.00300003
...........................................................................................................................................................A-TTTGACGACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2813.00310200
.....................................................................................................................................................................CGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................1913.00311001
..............................................................................................................................................................TTGACGACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2613.00300111
......................................................................................................................................................................GTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................1813.00300030
...................................................................................................................GCAATT--------GCCGAGGCCTGACTA...................................................................................................................................................................................................................................................................2112.00202000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGATTT..........................................................................................................................................................................................................................2312.00201100
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2312.00201001
................................................................................................CA----CCCAA--TACACAGCAATT--------GCCGAGGCCT........................................................................................................................................................................................................................................................................2911.00101000
...........................................................................................................................................GACTAAGTTTAGGGCAA-TTTGACGACGT...........................................................................................................................................................................................................................................2811.00100100
........................................................................................................................T--------GCCGAGGCCTGACTAAGTTTAGGG..........................................................................................................................................................................................................................................................2511.00100100
.................................................................................................................................................GTTTAGGGCAA-TTTGACGAC.............................................................................................................................................................................................................................................2011.00101000
...........................................................................................................................................GACTAAGTTTAGGGCAA-TTTGAC................................................................................................................................................................................................................................................2311.00100010
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2511.00110000
........................................................................................................................................................GCAA-TTTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2211.00100100
......ATAATTTAGGCCACGGCTGACAAAT....................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
...........................................................................................................................................GACTAAGTTTAGGGCAA-TTTGACGAC.............................................................................................................................................................................................................................................2611.00100100
...................................................................................................................................................TTAGGGCAA-TTTGACGACGTCT.........................................................................................................................................................................................................................................2211.00100100
......................................................................................................................................................................GTCTTTAGTAATCTGATA...........................................................................................................................................................................................................................1811.00110000
..........................................................................................................................................................AA-TTTGACGACGTCTTTAGTAATCTGATT...........................................................................................................................................................................................................................2911.00101000
........AATTTAGGCCACGGCTGACAAAT....................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
........AATTTAGGCCACGGCTGACAAATC...................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
....................GGCTGACAAATCTTAATCTCC------------CTC...........................................................................................................................................................................................................................................................................................................................................................2411.00101000
........................................................................................................................................................................................................................................................................................................................................................TACTTTCAGATTGAACGTGCC......................................2111.00100010
......................................................................................................................................................GGGCAA-TTTGACGACGTCTT........................................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................TTTAGGGCAA-TTTGACGACGT...........................................................................................................................................................................................................................................2111.00100010
................CCACGGCTGACAAATCTTAATC.............................................................................................................................................................................................................................................................................................................................................................................2211.00110000
droVir3
GA-CAAATGATTTAGGCTTGGGCGTACAATCTTT-A---TT------------TTTTATTG---AAAC------A----------GTGCTATTGTCGC----CCA-AAACACACAGCAGTA--------GCTGAGGCA-GGTTTTGT---TGCCAC-ATTGACGACGTCTTTAGTAATCTGAGTGCTCAT-CCATGCCAA-----AT-ATT--------T---------GTAT-TTAAAA--TACG---A-GCTTTC--------C----------------------------------------------------ATGTATAAACAAAT---TT----GTATACGTACAGGCCGAGCGAGCAAAGACGAAGGGCAGCGGCTGGTTTGATTTGCCGGCTACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................CCAC-ATTGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................321210.0021000000000000000000000000000000000000000001112000261733111715139100000
.......................................................................................................................................................GCCAC-ATTGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................33143.00430000000000000000000000000000000000000000003201031123120131820000
...............................................................................................CGC----CCA-AAACACACAGCAGT...........................................................................................................................................................................................................................................................................................20131.00310013000000001001002201100000100000300100000000000000000000001040
........................................................................................................................................................CCAC-ATTGACGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................31126.00260000000000000000000000000000000000000000000000000000001312100000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................25124.00244230000000000000001000000000000000000000000000000000000000010130
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................26124.0024007000000000000010000000000000010000000000000000000000000006090
........................................................................................................................................................CCAC-ATTGACGACGTCTTTAGTAATCTGAG............................................................................................................................................................................................................................3019.009000000000000000000000000000000000000000000000000000000010800000
......................................................................................................................................................................GTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2019.009003200000000000000000000001000000000000000000000000000000003000
.........................................................................................................................................................CAC-ATTGACGACGTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................3318.008000000000000000000000000000000000000000000000021100011000020000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2318.008104000000000000000000000000000000000001000000000000000000001010
......................................................................................................................................................................GTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................1917.007001000000000000100000000002000000000000000000000000000010000101
........GATTTAGGCTTGGGCGTACAATC....................................................................................................................................................................................................................................................................................................................................................................................2317.007101000000100000000000000000000000000000000000000000000000000040
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2516.006201000000000000000000000000000000010000000000000000000000000020
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2216.006003000000000000100000000000000000000000000000000000000000001010
.............................................................................................GTCGC----CCA-AAACACACAGCAGT...........................................................................................................................................................................................................................................................................................2216.006006000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2216.006101000000000000000000000000000000000000000000000000000000000220
.......................................................................................................................................................GCCAC-ATTGACGACGTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................3516.006000000000000000000000000000000000000000000000100001210000010000
........GATTTAGGCTTGGGCGTACAAT.....................................................................................................................................................................................................................................................................................................................................................................................2215.005001000000000000000000000000000000000000000000000000000000001030
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2015.005410000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2715.005012000000000000000000000000000000000000000000000000000000000020
........................................................................................................................................................................CTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................1715.005000000000000000000000000000000000000000000000000000000000000005
........................................................................................................................................................CCAC-ATTGACGACGTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................3415.005000000000000000000000000000000000000000000010000000000000040000
..........................................................................................ATTGTCGC----CCA-AAACACACAGCAGT...........................................................................................................................................................................................................................................................................................2515.005001000000000000100000000000001000100000000000000000000000000010
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2715.005000200000000000000000000000000000000000000000000000000000003000
...............................................................................................CGC----CCA-AAACACACAGCAGTA--------..................................................................................................................................................................................................................................................................................2115.005002000000000000010000000000002000000000000000000000000000000000
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2014.004100000000000000000000001000000010000000000000000000000000000010
.............................................................................................................................................................ATTGACGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2714.004100000000000000000000000000000000000000000000000000000000000030
............................................................................................TGTCGC----CCA-AAACACACAGCAGT...........................................................................................................................................................................................................................................................................................2314.004003000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2114.004000010000000000000000000000000000010000100000000000000000000100
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2414.004003000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2413.003001000000000000000000000000000000000000000000000000000000100010
..................................................................................................................................................T---TGCCAC-ATTGACGACGTCTT........................................................................................................................................................................................................................................2112.002000000001000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................GTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................1812.002001000000000000000000000000000000000000000000000000000000000001
............................................................................................TGTCGC----CCA-AAACACACAGCAGTA--------..................................................................................................................................................................................................................................................................................2412.002001000000000000000000100000000000000000000000000000000000000000
.........ATTTAGGCTTGGGCGTACAATC....................................................................................................................................................................................................................................................................................................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TTTAGTAATCTGAGTG..........................................................................................................................................................................................................................1612.002000000000000000000000000000000000000000000000001000001000000000
.............................................................................................................................................................................GTAATCTGAGTGCTCAT-CCATGCCA............................................................................................................................................................................................................2512.002001000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................C-ATTGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000020
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2012.002001000000000000000000000000000000000000000000000000000000000010
.....AATGATTTAGGCTTGGGC............................................................................................................................................................................................................................................................................................................................................................................................1812.002100100000000000000000000000000000000000000000000000000000000000
.A-CAAATGATTTAGGCTTGGGC............................................................................................................................................................................................................................................................................................................................................................................................2112.002110000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GACGACGTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
..............................................................................................TCGC----CCA-AAACACACAGCAGT...........................................................................................................................................................................................................................................................................................2112.002001000000000001000000000000000000000000000000000000000000000000
...............................................................................................CGC----CCA-AAACACACAGCAGC...........................................................................................................................................................................................................................................................................................2012.002000100000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................TGCCAC-ATTGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................3412.002000000000000000000000000000000000000000000000000000000002000000
.......................................................................................................................................................GCCAC-ATTGACGACGTCTTT.......................................................................................................................................................................................................................................2012.002000100000000001000000000000000000000000000000000000000000000000
.................................................................AAC------A----------GTGCTATTGTCGC----C............................................................................................................................................................................................................................................................................................................1812.002000000020000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................GCCAC-ATTGACGACGTCTTTAGTAATCTGAG............................................................................................................................................................................................................................3112.002000000000000000000000000000000000000000000000000000000010100000
................................................................................................GC----CCA-AAACACACAGCAGT...........................................................................................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
...........................................................TG---AAAC------A----------GTGCTATTGTCGC----CC...........................................................................................................................................................................................................................................................................................................2212.002001000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2112.002001000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2312.002020000000000000000000000000000000000000000000000000000000000000
......ATGATTTAGGCTTGGGCGTACAATC....................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................CGC----CCA-AAACACACAGCA.............................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................C-ATTGACGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GCTGAGGCA-GGTTTTGT---TGCC.........................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.......................................................TTATTG---AAAC------A----------GTGCTATTGTCGC----CCA-A........................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AGCAGTA--------GCTGAGGCA-GGTTTT..................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
........GATTTAGGCTTGGGCGTACAATCC...................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
.........................................................ATTG---AAAC------A----------GTGCTATTGT....................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
GA-CAAATGATTTAGGCTTGGGC............................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................GTA--------GCTGAGGCA-GGTTTT..................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................GTCGC----CCA-AAACACACAGCAGTA--------..................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGTGT.........................................................................................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
...........................................................TG---AAAC------A----------GTGCTATTGTC...................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................GTTTTGT---TGCCAC-ATTGACGAC.............................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.........................................................ATTG---AAAC------A----------GTGCTATTGTCG..................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................ACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATTGTCGC----CCA-AAACACACAGCAGTA--------..................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................GTCGC----CCA-AAACACACAGCA.............................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TTTAGTAATCTGAGTGCAA.......................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................TAATCTGAGTGCTCAT-CCATGCCA............................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
......................................................TTTATTG---AAAC------A----------GTGCTAT.......................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................GCCAC-ATTGACGACGTCTTTAGT....................................................................................................................................................................................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GAGCAAAGACGAAGGGCA.........................1811.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................AGCGAGCAAAGACGAAGGGC..........................2011.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................TTGACGACGTCTTTAGT....................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................CTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................1811.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................CGACGTCTTTAGTAATCTGAGG...........................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ATTGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................................ATTG---AAAC------A----------GTGCTATTGTCGC----C............................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CTTTAGTAATCTGAGTGCA........................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................AC-ATTGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................CTGAGGCA-GGTTTTGT---TGCCAC-......................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..........................................................TTG---AAAC------A----------GTGCTATTGT....................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................GCCAC-ATTGACGACGTCTTTAGTAATCTGAGTGCTC.......................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................................................TTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTGACGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GTAATCTGAGTGCTCAT-CCATGTTT............................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.....AATGATTTAGGCTTGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000001000000000000000000000000000000000000000000
.........................................................ATTG---AAAC------A----------GTGCTATTGTCGC----CCA-.........................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................GTAATCTGAGTGCTCAT-CCATGTT.............................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTGACGACGTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GCA-GGTTTTGT---TGCCAC-ATTGACGACGTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................4711.001000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................TGACGACGTCTTTAGTAAT.................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................A--------GCTGAGGCA-GGTTTTGT---TGCC.........................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................................................GCCAC-ATTGACGACGTCTTTA......................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................ATCTGAGTGCTCAT-CCATGCC.............................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................TTTATTG---AAAC------A----------GTGCTATTGT....................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CCAC-ATTGACGACGTCTTTA......................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................A----------GTGCTATTGTCGC----CCA-AAAC.....................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........GATTTAGGCTTGGGCGTAC........................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.................................................................AAC------A----------GTGCTATTGTCGC----CCG-.........................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
..........TTTAGGCTTGGGCGTACAATCT...................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......ATGATTTAGGCTTGGGCGTACA.......................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTGACGACGTCTTTAGTAATCTGAGC...........................................................................................................................................................................................................................2611.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................A--------GCTGAGGCA-GGTTTTGT---.............................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
...................................................................C------A----------GTGCTATTGTCGC----CCA-.........................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGTGCTT.......................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................TTGGGCGTACAATCTTT-A---TT------------T.............................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
..........TTTAGGCTTGGGCGTACAATC....................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000010000000
...............................................................................................CGC----CCA-AAACACACAGCAG............................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGTGA.........................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................TGACGACGTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................GTAATCTGAGTGCTCAT-CCATT...............................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................AAC------A----------GTGCTATTGTCGC----CC...........................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................GCCAC-ATTGACGACGTCTT........................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TTAGTAATCTGAGTGCT........................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................A--------GCTGAGGCA-GGTTTTGT---TG...........................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........GATTTAGGCTTGGGCGTACAATCT...................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
...........................................................TG---AAAC------A----------GTGCTATTGTCGC----C............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.......................................TT------------TTTTATTG---AAAC------A----------GTGCT.........................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................GCCAC-ATTGACGACGTCTTTAGTAATCTGAGTGAA........................................................................................................................................................................................................................3511.001000000000000000000000000000000000000000000000000000000000010000
.............................................................................................GTCGC----CCA-AAACACACAGC..............................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
.....AATGATTTAGGCTTGGGCGTACAATC....................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGTGCA........................................................................................................................................................................................................................2411.001000000000000000000000000000000000000010000000000000000000000000
..................TGGGCGTACAATCTTT-A---TT------------TTTT..........................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................CAGCAGTA--------GCTGAGGCA-GGTT....................................................................................................................................................................................................................................................................2111.001000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GCTGAGGCA-GGTTTTGT---TGC..........................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................T---TGCCAC-ATTGACGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................3511.001000000000000000000000000000000000000000000000000000000001000000
............................................................G---AAAC------A----------GTGCTATTGTCGC----.............................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................ATTGTCGC----CCA-AAACACACAGCA.............................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000100000000000000000000000000000
........................................................TATTG---AAAC------A----------GTGCTATTGTCGC----CCA-.........................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................TCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................2011.001000000100000000000000000000000000000000000000000000000000000000
........GATTTAGGCTTGGGC............................................................................................................................................................................................................................................................................................................................................................................................1520.501000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................CAT-CCATGCCAA-----AT-ATT--------C---------C.............................................................................................................................................................................1940.251001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GTAATCTGAGTGCTCAT-TTT.................................................................................................................................................................................................................20140.142001000000000000000100000000000000000000000000000000000000000000
droMoj3
GG-CAGATGATTTAGGCGTGGGCGCACAATTTTA-A---CT------------AATCAATG---AAAC------ATA--------GTGCTATTGTCGC----CCCAA--AACACAGCAGTG--------GCCAAGGCA-GACGTTGT---TGCCAC-ATTGATGACGTCTTTAGTAATCTGAGTGCTGCTG-CT-------C-CT-A-GTAA-----------ATGAATGCACCAAA--TTA-----------TGATTT------CGTC--------------------------------------------------TACAGAAACGTAC---TT---GGTTTAATTACAGGCGGAACGTGCTAAGACGAAGGGCAGCGGCTGGTTTGATTTGCCGGCAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................ATGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................24124.002414000010
................................................................................................................................................................GATGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................25111.0011101009
.................................................................................................................CAGCAGTG--------GCCAAGGCA-GACG....................................................................................................................................................................................................................................................................2119.009020070
..................................................................................................................................................................TGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2317.007500002
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2217.007600001
.............................................................................................................................................................ATTGATGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2816.006200004
..............................................................................................................................................................TTGATGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2715.005200003
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2015.005400001
....................................................................................................................................................................ACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2113.003300000
........................................................................................................................................................................CTTTAGTAATCTGAGTGCA........................................................................................................................................................................................................................1913.003300000
......................................................................................................................................................................GTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................1913.003200001
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................2413.003200001
...............................................................................................................................................................TGATGACGTCTTTAGTAATCTGAGTG..........................................................................................................................................................................................................................2613.003000003
.......................................................................................................................................................GCCAC-ATTGATGACGTCTTTAGTA...................................................................................................................................................................................................................................2413.003200001
.................................................................................................................................................................ATGACGTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2513.003000003
........................................................................................................................................................................CTTTAGTAATCTGAGTGCTG.......................................................................................................................................................................................................................2012.002100100
..........................................................................................ATTGTCGC----CCCAA--AACACAGCAGT...........................................................................................................................................................................................................................................................................................2412.002200000
........................................................................................................................................................................CTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................1912.002100001
........................................................................................................................................................CCAC-ATTGATGACGTCTTTAGTA...................................................................................................................................................................................................................................2312.002200000
...................................................................................................................GCAGTG--------GCCAAGGCA-GACG....................................................................................................................................................................................................................................................................1912.002000011
..............................................................................................................................................GTTGT---TGCCAC-ATTGATGACGTC..........................................................................................................................................................................................................................................2312.002001001
.............................................................................................GTCGC----CCCAA--AACACAGCAGT...........................................................................................................................................................................................................................................................................................2112.002100001
.................................................................................................................................................................ATGACGTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................2612.002100001
..........................................................................ATA--------GTGCTATTGTCGC----CCCAA--......................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................C------ATA--------GTGCTATTGTCGC----C............................................................................................................................................................................................................................................................................................................1811.001000010
.....GATGATTTAGGCGTGGGC............................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................GTGGGCGCACAATTTTA-A---CT------------AATCAATG---...................................................................................................................................................................................................................................................................................................................................................2811.001000001
..........................................................................ATA--------GTGCTATTGTCGC----CCC..........................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................GTCTTTAGTAATCTGAGTGCTG.......................................................................................................................................................................................................................2211.001000001
........................................................................................................................................................CCAC-ATTGATGACGTCTTTAGTAATC................................................................................................................................................................................................................................2611.001100000
..................................................................................................................AGCAGTG--------GCCAAGGCA-GACG....................................................................................................................................................................................................................................................................2011.001000010
...................GGGCGCACAATTTTA-A---CT------------AATC..........................................................................................................................................................................................................................................................................................................................................................2211.001000001
............................................................G---AAAC------ATA--------GTGCTATTGTCGC----C............................................................................................................................................................................................................................................................................................................2211.001000010
.................................................................................................................................................................ATGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2311.001000001
.............................TTTTA-A---CT------------AATCAATG---AAAC------.........................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................GTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2311.001000001
..........................................................................ATA--------GTGCTATTGTCGC----CCCA.........................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................GCCAAGGCA-GACGTTGT---TGCC.........................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................GTTGT---TGCCAC-ATTGATGACGTCTTTA......................................................................................................................................................................................................................................2711.001000001
....................................................................................................................................AAGGCA-GACGTTGT---TGCCAC-ATTGATG...............................................................................................................................................................................................................................................2711.001100000
...................................................................................................................................................................GACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2111.001100000
.......TGATTTAGGCGTGGGCGCACAATTT...................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...................................................................................................................GCAGTG--------GCCAAGGCA-GACGT...................................................................................................................................................................................................................................................................2011.001000010
.........................................................AATG---AAAC------ATA--------GTGCTATTGTCGC----C............................................................................................................................................................................................................................................................................................................2511.001010000
............................................................G---AAAC------ATA--------GTGCTATTGTCGC----.............................................................................................................................................................................................................................................................................................................2111.001000010
.......TGATTTAGGCGTGGGCGCACAATTTTA-................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.....................................................................................................................................................................CGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................1911.001000100
.............................................................................................................................................................ATTGATGACGTCTTTAGTAATCTGAGT...........................................................................................................................................................................................................................2711.001100000
............................................................................................TGTCGC----CCCAA--AACACAGCAGT...........................................................................................................................................................................................................................................................................................2211.001001000
................CGTGGGCGCACAATTTTA-A---CT------------A.............................................................................................................................................................................................................................................................................................................................................................2211.001000001
..................................................................................................................................CCAAGGCA-GACGTTGT---TGCCAC-ATTG..................................................................................................................................................................................................................................................2611.001000001
.................................................................................................................CAGCAGTG--------GCCAAGGCA-GAT.....................................................................................................................................................................................................................................................................2011.001000010
........................................T------------AATCAATG---AAAC------ATA--------GTGCT.........................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................CAC-ATTGATGACGTCTTTAGTAA..................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................TCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................1911.001100000
.................................................................................................................CAGCAGTG--------GCCAAGGCA-GAC.....................................................................................................................................................................................................................................................................2011.001000010
........................................................................................................................................................CCAC-ATTGATGACGTCTTTAGTAAT.................................................................................................................................................................................................................................2511.001000001
.............................................................................................GTCGC----CCCAA--AACACAGCAGTG--------..................................................................................................................................................................................................................................................................................2211.001100000
.........................................................................................................................................................CAC-ATTGATGACGTCTTTAGTAATC................................................................................................................................................................................................................................2511.001100000
........GATTTAGGCGTGGGCGCACAAT.....................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
........GATTTAGGCGTGGGCGCACAATT....................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................GCCAC-ATTGATGACGTCTTTAG.....................................................................................................................................................................................................................................2211.001000001
.......................................................................................................................................................GCCAC-ATTGATGACGTCTT........................................................................................................................................................................................................................................1911.001000001
................................................................................................................................................................GATGACGTCTTTAGTAATCTGAGTGCT........................................................................................................................................................................................................................2711.001000001
.........................................................................................................................................................................................................................................................................................................................................................................TGCTAAGACGAAGGGCAGCGGCTG..................2411.001100000
...........TTAGGCGTGGGCGCACAATTTTA-A---CT------------..............................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................GTGGGCGCACAATTTTA-A---CT------------A.............................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................................................................................................................................................CCAC-ATTGATGACGTCTTTAGT....................................................................................................................................................................................................................................2211.001100000
......................................................................................................................................................................GTCTTTAGTAATCTGAGTGC.........................................................................................................................................................................................................................2011.001100000
.........................................................AATG---AAAC------ATA--------GTGCTATTGTCGC----.............................................................................................................................................................................................................................................................................................................2411.001000010
droGri2
GC-CAAATAATTTAGGCGTGGGCTCACAATTATC-----TTATT-TT---------AAATGAAA----CGCT--AG---------GTGCTATTGTCGC----CCC-A--TGCACAGTAGTT--------ATCGAGGCAGGTGT-TGT---TGCCAC-ATTGACGACGTCTTTAGTAATCTGAGTGCTCAA-CTATGCTAA-----TT---------ATCT-------------------T--TATATATATGTATATC-------CAAATATAAAA-----------------------------------------------GAATCTTA----T-----TATTAATTACAGTCTGAACGCAGCAAGACGAAGGGCAGCGGCTGGTTTGATTTGCCAGCAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................CGC----CCC-A--TGCACAGTAGTT--------..................................................................................................................................................................................................................................................................................1911.00110
..............................................................................................................GCACAGTAGTT--------ATCGAGG...........................................................................................................................................................................................................................................................................1811.00110
....................................................................................................................TAGTT--------ATCGAGGCAGGTGT-T..................................................................................................................................................................................................................................................................2011.00101
......................................................................................................................GTT--------ATCGAGGCAGGTGT-TGT---TG...........................................................................................................................................................................................................................................................2211.00101
.....AATAATTTAGGCGTGGGCTCACA.......................................................................................................................................................................................................................................................................................................................................................................................2311.00101
..........................................................................................................A--TGCACAGTAGTT--------ATCGAGGCA.........................................................................................................................................................................................................................................................................2211.00110

Generated: 05/17/2015 at 11:48 PM