dya_963

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGGGCGAGGACAACGACAAGGATGTGCTGGAATTTTTGCAGAACGTGAAGGCCAAAGACCTTATACGCGTGGAGGAAAATGTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ************************************************......................((((.....))))....................................................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V120 male body	M043 female body	M056 embryo	V058 head	V052 head
..............................................................ATACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	23	0	2	3.50	7	7	0	0	0	0
..............GACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	19	0	2	1.00	2	0	2	0	0	0
..............................................................ATACGCGTGGAGGAAAATGT.........................................................................................................................................................................	20	0	2	1.00	2	1	1	0	0	0
..........CAACGACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	23	0	2	1.00	2	2	0	0	0	0
........................................GAACGTGAAGGCCAAAGACCT..............................................................................................................................................................................................	21	0	2	1.00	2	2	0	0	0	0
.............................................................TATACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	24	0	2	1.00	2	1	1	0	0	0
................................................AGGCCAAAGACCTTATACGCGTGGAGG................................................................................................................................................................................	27	0	2	1.00	2	2	0	0	0	0
...................................TTGCAGAACGTGAAGGCCA.....................................................................................................................................................................................................	19	0	2	0.50	1	1	0	0	0	0
....................................................CAAAGACCTTATACGCGTGGA..................................................................................................................................................................................	21	0	2	0.50	1	0	1	0	0	0
AGGGCGAGGACAACGACAAG.......................................................................................................................................................................................................................................	20	0	2	0.50	1	1	0	0	0	0
..............................................................ATACGCGTGGAGGAAAATGTC........................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0
.........ACAACGACAAGGATGTGCTGGA............................................................................................................................................................................................................................	22	0	2	0.50	1	1	0	0	0	0
........GACAACGACAAGGATGTGCTGGAAC..........................................................................................................................................................................................................................	25	1	2	0.50	1	0	0	1	0	0
................................................AGGCCAAAGACCTTATACGCGTGGA..................................................................................................................................................................................	25	0	2	0.50	1	0	1	0	0	0
.............................................AGAAGGACAAAGACCTCATACG........................................................................................................................................................................................	22	3	2	0.50	1	0	0	0	1	0
.............CGACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	20	0	2	0.50	1	1	0	0	0	0
................................................AGGCCAAAGACCTTATACGCGTGGAG.................................................................................................................................................................................	26	0	2	0.50	1	1	0	0	0	0
..........CAACGACAAGGATGTGCTGGAATTT........................................................................................................................................................................................................................	25	0	2	0.50	1	0	1	0	0	0
........................................................GACCTTATACGCGTGGAGG................................................................................................................................................................................	19	0	2	0.50	1	1	0	0	0	0
..................................TTTGCAGAACGTGAAGGCCAAAGACCT..............................................................................................................................................................................................	27	0	2	0.50	1	0	1	0	0	0
...GCGAGGACAACGACAAGTATGTGCT...............................................................................................................................................................................................................................	25	1	2	0.50	1	1	0	0	0	0
............................................................TTATACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	25	0	2	0.50	1	1	0	0	0	0
..........CAACGACAAGGATGTGCTG..............................................................................................................................................................................................................................	19	0	2	0.50	1	1	0	0	0	0
................................................................ACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0
.......GGACAACGACAAGGATGTGCT...............................................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0
.............CGACAAGGATTTGCTGGAATT.........................................................................................................................................................................................................................	21	1	2	0.50	1	1	0	0	0	0
..........CAACGACAAGGATGTGCTGGAATT.........................................................................................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
..........AAACGACAAGGATGTGATG..............................................................................................................................................................................................................................	19	2	2	0.50	1	1	0	0	0	0
.........................................................ACCTTATACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	28	0	2	0.50	1	1	0	0	0	0
.................................................GGCCAAAGACCTTATACGCGTGGAGG................................................................................................................................................................................	26	0	2	0.50	1	0	1	0	0	0
........GACAACGACAAGGATGTGCTGGAATT.........................................................................................................................................................................................................................	26	0	2	0.50	1	1	0	0	0	0
..........CAACGACAAGGATGTGCTGG.............................................................................................................................................................................................................................	20	0	2	0.50	1	1	0	0	0	0
........................................GAACGTGAAGGCCAAAGAC................................................................................................................................................................................................	19	0	2	0.50	1	1	0	0	0	0
....................................TGCAGAACGTGAAGGCCAAA...................................................................................................................................................................................................	20	0	2	0.50	1	0	0	0	1	0
.............CGACAAGGATGTGCTGGAATTTTTGCAGA.................................................................................................................................................................................................................	29	0	2	0.50	1	1	0	0	0	0
...............................................................TACGCGTGGAGGAAAATGT.........................................................................................................................................................................	19	0	2	0.50	1	1	0	0	0	0
....................................................CAAAGACCTTATACGCGTGGAGGA...............................................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
...............................ATTTTTGCAGAACGTGAAGGC.......................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0
..............................................................ATACGCGTGGAGGAAAATG..........................................................................................................................................................................	19	0	2	0.50	1	0	0	1	0	0
.....GAGGACAACGACAAGGATGTGCT...............................................................................................................................................................................................................................	23	0	2	0.50	1	1	0	0	0	0
...........AACGACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	22	0	2	0.50	1	1	0	0	0	0
.................................TTTTGCAGAACGTGAAGGC.......................................................................................................................................................................................................	19	0	2	0.50	1	0	0	0	0	1
............ACGACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0
.......GTACAACGACAAGGAGGTGC................................................................................................................................................................................................................................	20	2	5	0.20	1	0	0	1	0	0
................................TTTTTACAGAACGTGGAGC........................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0

TCCCGCTCCTGTTGCTGTTCCTACACGACCTTAAAAACGTCTTGCACTTCCGGTTTCTGGAATATGCGCACCTCCTTTTACAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ************************************************......................((((.....))))....................................................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body
..........................................TGGAGTTCCGGTTACTGGA..............................................................................................................................................................................................	19	3	17	0.06	1	1

Species	Coordinate	ID	Alignment
droYak3	3R:6971254-6971504 +	dya_963	AGGGCGAGGACAACGACAAGGATGTGCTGGAATTTTTGCAGAACGTGAAGGCCAAAGACCTTATACGCGTGGAGGAAAATGTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
droEre2	scaffold_4770:3606218-3606302 -		AGGGCGAGGACAACGACAAGGATGTGCTGCAGTTTTTGCAGCACGTGAAGGCCAAAGACCTTATACGAGTGGAGGAACATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_6:3442045-3442129 -		AGGGCGAGGACAACGACAAGGATGTGCTGAAGTTCTTGCAGAACGTGAAGGCCAAGGATCTTATTCGCGTGGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	3r:3264636-3264720 -		AGGGCGAGGACAACGACAAGGATGTGCTAGAGTTCTTGCTGAACGCGAAGGCCAAGGATCTTATTCGCGTGGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3R:3346413-3346497 -		AGGGCGAGGACAACGACAAGGATGTGCTGGAGTTCTTGCAGAACGTAAAGGCCAAGGATCTTATTCGCGTGGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409760:246968-247052 -		AGGGGGAGGATAACGACAAGGATGTACTGGAATTCCTGCAGAATGTAAAGGCAAGAGATCTGATTAGGGTCGAGGAAAATGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302155:1252584-1252668 +		AGGGCGAGGACAACGACAAGGATGTGCTGGAGTTCCTGCAGGCCGTGAAGGCCAAGGATCTCATACGCGTCGAGGAAAATGTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415875:519386-519470 -		AGGGCGAGGACAACGACAAGGATGTGTTGGAGTTCCTGCAGAACGTGAAGGCTAAAGATCTCATACGGGTCGAGGAGAATGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491104:1006571-1006655 +		AGGGCGAGGACAACGACAAGGATGTGCTGGAGTTCCTGCAGACCGTCAAGGCCAGGGATCTCATACGGGTCGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000773324:11433-11517 +		AGGGCGAGGACAACGACAAGGATGTGCTGGAGTTCCTGCAGACCGTTAAGGCCAAAGATCTCATACGAGTCGAAGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454063:288513-288597 +		AGGGTGAGAATAACGACAAGGATGTTCTGGAATTCCTGCAGACCGTGAAGGCCAAAGATCTCATTCGGGTGGAGGAACATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302706:112508-112592 -		AGGGGGAGGATAATGACAAGGATGTGCTGGATTTTCTGCAAACTGTGAAGGCCAAGGACCTCATCCGGGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13340:3117481-3117565 -		AGGGAGAGGACAATGACAAGGATGTACTGGAATTTTTACAGAACGTCAAAGCCAAGGATCTCATTCGCGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396712:1233056-1233140 +		AGGGCGAGGACAATGACAAGGATGTACTGGAATTTTTGCAAAACATAAAAGCCAAGGATCTCATTCGCGTCGAGGAGAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	2:26739987-26740071 -		AGGGCGAGGACAAAGACAAGGATGTGCTGGAGTTTTTGCAGAATGTAAAGGCCAAAGATCTGATACGTGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_6:2057906-2057990 -		AGGGCGAGGACAAAGACAAGGATGTGCTGGAGTTTTTGCAGAATGTAAAGGCCAAAGATCTGATACGTGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004902:7233937-7234021 -		AGGGAGAGAATAATGACAAGGATGTCTTGAGTTTTTTGCACAACATCAAGGCCAAAGACTTGATACGTGTAGAGGAACACGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12855:6244119-6244203 -		AGGGCGAGAACAATGAGAAGGATGTGCTGCATTTTCTGCAAGCAGCACCAGCCAGGGATCTGATACGCGTGGAGAAGCATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:6585834-6585918 -		AGGGCGAGGACAACGAGAAGGATGTGCTACAGTTTCTGCAGACAGTGCGTGCCAGGGACCTGATACGCGTGGAGGAGCAGGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14906:7831039-7831123 +		AAGGCGAGAACAATGAAAAGGATGTGTTGCAGTTTTTGCAAACTGTGAAGGCCAGAGATCTGCTAAGATTGGAGGACAAAGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

AGGGCGAGGACAACGACAAGGATGTGCTGGAATTTTTGCAGAACGTGAAGGCCAAAGACCTTATACGCGTGGAGGAAAATGTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................ATACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	23	2	3.50	7	0	0	0	0	0	0	7	0	0	0	0
..............GACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................ATACGCGTGGAGGAAAATGT.........................................................................................................................................................................	20	2	1.00	2	0	1	0	0	0	0	1	0	0	0	0
..........CAACGACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	23	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................GAACGTGAAGGCCAAAGACCT..............................................................................................................................................................................................	21	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................................TATACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	24	2	1.00	2	0	1	0	0	0	0	1	0	0	0	0
................................................AGGCCAAAGACCTTATACGCGTGGAGG................................................................................................................................................................................	27	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................TTGCAGAACGTGAAGGCCA.....................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
....................................................CAAAGACCTTATACGCGTGGA..................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
AGGGCGAGGACAACGACAAG.......................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................ATACGCGTGGAGGAAAATGTC........................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........ACAACGACAAGGATGTGCTGGA............................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
........GACAACGACAAGGATGTGCTGGAAC..........................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
................................................AGGCCAAAGACCTTATACGCGTGGA..................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............CGACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................................................AGGCCAAAGACCTTATACGCGTGGAG.................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........CAACGACAAGGATGTGCTGGAATTT........................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................GACCTTATACGCGTGGAGG................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..................................TTTGCAGAACGTGAAGGCCAAAGACCT..............................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
............................................................TTATACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........CAACGACAAGGATGTGCTG..............................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
................................................................ACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.......GGACAACGACAAGGATGTGCT...............................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........CAACGACAAGGATGTGCTGGAATT.........................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................ACCTTATACGCGTGGAGGAAAATGTCCT......................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................................................GGCCAAAGACCTTATACGCGTGGAGG................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........GACAACGACAAGGATGTGCTGGAATT.........................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........CAACGACAAGGATGTGCTGG.............................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
........................................GAACGTGAAGGCCAAAGAC................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
....................................TGCAGAACGTGAAGGCCAAA...................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0
.............CGACAAGGATGTGCTGGAATTTTTGCAGA.................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................TACGCGTGGAGGAAAATGT.........................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
....................................................CAAAGACCTTATACGCGTGGAGGA...............................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...............................ATTTTTGCAGAACGTGAAGGC.......................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................ATACGCGTGGAGGAAAATG..........................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.....GAGGACAACGACAAGGATGTGCT...............................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........AACGACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................................TTTTGCAGAACGTGAAGGC.......................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0
............ACGACAAGGATGTGCTGGAAT..........................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AGGGCGAGGACAACGACAAGGATGTGCTGCAGTTTTTGCAGCACGTGAAGGCCAAAGACCTTATACGAGTGGAGGAACATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................AGGCCAAAGACCTTATACGAGTGGAG.................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	2	1	0
..........CAACGACAAGGATGTGCTGC.............................................................................................................................................................................................................................	20	1	3.00	3	1	0	0	2	0	0	0
...........AACGACAAGGATGTGCTGC.............................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	1	1	1	0
........GACAACGACAAGGATGTGCTGC.............................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	1	0	0	0
..............................AGTTTTTGCAGCACGTGAAGGC.......................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	1	1	0
..........................................ACGTGAAGGCCAAAGACCT..............................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0
..........CAACGACAAGGATGTGCT...............................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
....................................TGCAGCACGTGAAGGCCAAAGACCTTA............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
........................................................GACCTTATACGAGTGGAG.................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
....CGAGGACAACGACAAGGATGTGCTGC.............................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...............................GTTTTTGCAGCACGTGAAGGC.......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
....................................................CAAAGACCTTATACGAGTGGAGGA...............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
........................................................GACCTTATACGAGTGGAGGAACATGTC........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...............................GTTTTTGCAGCACGTGAAGGCCAAAGA.................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....GAGGACAACGACAAGGATGT..................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................TATACGAGTGGAGGAACATGTC........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............................GTTTTTGCAGCACGTGAAGGCCAAAG..................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
...........AACGACAAGGATGTGCTGCA............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........................................CACGTGAAGGCCAAAGACCT..............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........GACAACGACAAGGATGTGCT...............................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
....CGAGGACAACGACAAGGATGTG.................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
............................GCAGTTTTTGCAGCACGTGAA..........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.................................................GGCCAAAGACCTTATACGAGTGGA..................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
............................GCAGTTTTTGCAGCACGTGAAGGCCAAA...................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
.........ACAACGACAAGGATGTGCTGCA............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.......................................AGCACGTGAAGGCCAAAGACCTT.............................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
............ACGACAAGGATGTGCTGC.............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............................AGTTTTTGCAGCACGTGAA..........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.......GGACAACGACAAGGATGTGCTGCA............................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0

droSec2

AGGGCGAGGACAACGACAAGGATGTGCTGAAGTTCTTGCAGAACGTGAAGGCCAAGGATCTTATTCGCGTGGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........AACGACAAGGATGTGCTGAAGTT.........................................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0
..................................CTTGCAGAACGTGAAGGCCAAGGATC...............................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
....................................TGCAGAACGTGAAGGCCAAGG..................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...........................................................CTTATTCGCGTGGAGGAAAATGTC........................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..................................................GCCAAGGATCTTATTCGCGTGGAGG................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
................................................AGGCCAAGGATCTTATTCGCGTGGA..................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.....................................................AAGGATCTTATTCGCGTGGAGG................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
....................GATGTGCTGAAGTTCTTGCAGAACGTG............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
.........................................................ATCTTATTCGCGTGGAGG................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..........CAACGACAAGGATGTGCTGAA............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..............................................................ATTCGCGTGGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	23	1	1.00	1	0	1	0	0
.........ACAACGACAAGGATGTGCTGAAGTT.........................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
...........AACGACAAGGATGTGCTGAAGTTCT.......................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
............ACGACAAGGATGTGCTGAAG...........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
....CGAGGACAACGACAAGGAT....................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
..............................................................ATTCGCGTGGAGGAAAATGT.........................................................................................................................................................................	20	1	1.00	1	0	1	0	0
..................................CTTGCAGAACGTGAAGGCC......................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
........GACAACGACAAGGATGTGCTGAAGTTCT.......................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.........................GCTGAAGTTCTTGCAGAA................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
......................................................AGGATCTTATTCGCGTGGA..................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..........................................ACGTGAAGGCCAAGGATCTTATTCGC.......................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..............GACAAGGATGTGCTGAAGTTCT.......................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
................................TTCTTGCAGAACGTGAAGGCCAA....................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
............ACGACAAGGATGTGCTGAA............................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...................................................................CGTGGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	18	1	1.00	1	0	0	1	0
....................................................CAAGGATCTTATTCGCGTGGAGGAAAAT...........................................................................................................................................................................	28	1	1.00	1	0	1	0	0
..................................CTTGCAGAACGTGAAGGCCAAGG..................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
...........................................CGTGAAGGCCAAGGATCTT.............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
...........................................CGTGAAGGCCAAGGATCTTATTCGC.......................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
...............................................................TTCGCGTGGAGGAAAATGTCC.......................................................................................................................................................................	21	1	1.00	1	1	0	0	0

droSim2

AGGGCGAGGACAACGACAAGGATGTGCTAGAGTTCTTGCTGAACGCGAAGGCCAAGGATCTTATTCGCGTGGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................GATGTGCTAGAGTTCTTGCTGAACGC.............................................................................................................................................................................................................	26	1	8.00	8	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTGCTGAACGCGAAGGCCAAGG..................................................................................................................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGCTAGAGTTCTTGCTGAACGC.............................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................CAAGGATGTGCTAGAGTTC........................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAGGATGTGCTAGAGTTC........................................................................................................................................................................................................................	18	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CAACGACAAGGATGTGCTAGAGTT.........................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CAACGACAAGGATGTGCTAGAGT..........................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CAACGACAAGGATGTGCTAGAGTTCT.......................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AACGACAAGGATGTGCTAGAGTTCT.......................................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GGCCAAGGATCTTATTCGCGG.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ATTCGCGTGGAGGAAAATGTC........................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AACGACAAGGATGTGCTAGAGTTCTTGCT...................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACAACGACAAGGATGTGCT...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GAACGCGAAGGCCAAGGATC...............................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAGGATGTGCTAGAGTTCTT......................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTGCTAGAGTTCTTGCTGAACGC.............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CAACGACAAGGATGTGCTAGA............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTGCTGAACGCGAAGGCCAAGGATCG..............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GACAACGACAAGGATGTGCTAGAGTTCT.......................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TGCTGAACGCGAAGGCCAAGGATC...............................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAGGACAACGACAAGGAT....................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTGCTGAACGCGAAGGCC......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GACAAGGATGTGCTAGAGTT.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACAAGGATGTGCTAGAGTTCT.......................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACGACAAGGATGTGCTAGAGTTCT.......................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTGCTGAACGCGAAGGCC......................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GGCGAGGACAACGACAAGGATG...................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTGCTAGAGTTCTTGCTGAACGCGAAG.........................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACGACAAGGATGTGCTAGA............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AACGACAAGGATGTGCTAGAGTT.........................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTGCTGAACGCGAAGGCCA.....................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GACAACGACAAGGATGTGCTAGAGTTCTT......................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GATCTTATTCGCGTGGAGGAAAAT...........................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........GACAACGACAAGGATGTGCTAGA............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AGGCCAAGGATCTTATTCGC.......................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GACAAGGATGTGCTAGAGTTCT.......................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CGAGGACAACGACAAGGATGT..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....CGAGGACAACGACAAGGATGTGG................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTGCTGAACGCGAAGGCCAAGGATCTT.............................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CAACGACAAGGATGTGCTAGAGTTCTT......................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AAGGATGTGCTAGAGTTCT.......................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGTGCTAGAGTTCTTGCTGAACGC.............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TGCTGAACGCGAAGGCCAAGG..................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAGGACAACGACAAGGATG...................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GACAAGGATGTGCTAGAGT..........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTGCTGAACGCGAAGGCCAAGGAT................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........GACAACGACAAGGATGTGCTAGAGTT.........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACAACGACAAGGATGTGCTAGAGTTC........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

AGGGCGAGGACAACGACAAGGATGTGCTGGAGTTCTTGCAGAACGTAAAGGCCAAGGATCTTATTCGCGTGGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................GCCAAGGATCTTATTCGCGTGGAG.................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................GCGTGGAGGAAAATGTCC.......................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................TCTTATTCGCGTGGAGGA...............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........AACGACAAGGATGTGCTGGA............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AACGACAAGGATGTGCTGGAG...........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGGGCGAGGACAACGACA.........................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AGGACAACGACAAGGATGGC.................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

AGGGGGAGGATAACGACAAGGATGTACTGGAATTCCTGCAGAATGTAAAGGCAAGAGATCTGATTAGGGTCGAGGAAAATGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGGCGAGGACAACGACAAGGATGTGCTGGAGTTCCTGCAGGCCGTGAAGGCCAAGGATCTCATACGCGTCGAGGAAAATGTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGGCGAGGACAACGACAAGGATGTGTTGGAGTTCCTGCAGAACGTGAAGGCTAAAGATCTCATACGGGTCGAGGAGAATGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGGCGAGGACAACGACAAGGATGTGCTGGAGTTCCTGCAGACCGTCAAGGCCAGGGATCTCATACGGGTCGAGGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGGGCGAGGACAACGACAAGGATGTGCTGGAGTTCCTGCAGACCGTTAAGGCCAAAGATCTCATACGAGTCGAAGAAAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGGGTGAGAATAACGACAAGGATGTTCTGGAATTCCTGCAGACCGTGAAGGCCAAAGATCTCATTCGGGTGGAGGAACATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGGGGAGGATAATGACAAGGATGTGCTGGATTTTCTGCAAACTGTGAAGGCCAAGGACCTCATCCGGGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGGGAGAGGACAATGACAAGGATGTACTGGAATTTTTACAGAACGTCAAAGCCAAGGATCTCATTCGCGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................CATTCGCGTCGAGGAGAAT...........................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
........GACAATGACAAGGATGTACT...............................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	1	0
.....................................................AAGGATCTCATTCGCGTCGAGGAGAAT...........................................................................................................................................................................	27	1	2.00	2	0	0	0	0	2	0
............................................GTCAAAGCCAAGGATCTCATTCGCGTC....................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	2	0
........GACAATGACAAGGATGTA.................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
....................................TACAGAACGTCAAAGCCAAGGAT................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................AAGGATCTCATTCGCGTCGAGGAGA.............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..............................AATTTTTACAGAACGTCAA..........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.................................................................CGCGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	20	1	1.00	1	1	0	0	0	0	0
......................................................AGGATCTCATTCGCGTCGAGGA...............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
............................................GTCAAAGCCAAGGATCTCATTCGC.......................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................ATTTTTACAGAACGTCAAAGCCAAGGATC...............................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.......GGACAATGACAAGGATGTACTGGA............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.................................................AGCCAAGGATCTCATTCGCGTC....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................ATTTTTACAGAACGTCAAAGCCAAGGAT................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........................ACTGGAATTTTTACAGAACGTC............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..............GACAAGGATGTACTGGAATT.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
......AGGACAATGACAAGGATGT..................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....GAGGACAATGACAAGGATGT..................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
....................GATGTACTGGAATTTTTACAGAACGT.............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
....AGAGGACAATGACAAGGA.....................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................CAAGGATGTACTGGAATTTTTACAGAA................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
........................................................GATCTCATTCGCGTCGAGGAGAAT...........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...........................................................CTCATTCGCGTCGAGGAGA.............................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
................................................AAGCCAAGGATCTCATTCGCGT.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..............GACAAGGATGTACTGGAATTTTTAC....................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................AAAGCCAAGGATCTCATTCGCGTC....................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.............................GAATTTTTACAGAACGTCAA..........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
............................................GTCAAAGCCAAGGATCTCATTCGCGT.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
............................................GTCAAAGCCAAGGATCTC.............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................CAAAGCCAAGGATCTCATTCGCGTC....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
........GACAATGACAAGGATGTACTG..............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............GACAAGGATGTACTGGAATTTTTACAGA.................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................ACGTCAAAGCCAAGGATCTCATT..........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................TCAAAGCCAAGGATCTCATTCGC.......................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............................................GTCAAAGCCAAGGATCTCATTCG........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................TTCGCGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	22	1	1.00	1	1	0	0	0	0	0
...................................TTACAGAACGTCAAAGCCAAG...................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................GAATTTTTACAGAACGTCAAAG........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
........GACAATGACAAGGATGTACTGG.............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
............................................GTCAAAGCCAAGGATCTCATT..........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................TTACAGAACGTCAAAGCCAAGGATCT..............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
...............................ATTTTTACAGAACGTCAAAGCC......................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.........................ACTGGAATTTTTACAGAACGTCAAAGC.......................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
............ATGACAAGGATGTACTGG.............................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................GATCTCATTCGCGTCGAGGAGAATGTT........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.....................................................AAGGATCTCATTCGCGTCGA..................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........AATGACAAGGATGTACTGGA............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...GAGAGGACAATGACAAGGATGTA.................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..........................................................TCTCATTCGCGTCGAGGAGA.............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...................................TTACAGAACGTCAAAGCCAAGG..................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droBip1

AGGGCGAGGACAATGACAAGGATGTACTGGAATTTTTGCAAAACATAAAAGCCAAGGATCTCATTCGCGTCGAGGAGAATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGGGCGAGGACAAAGACAAGGATGTGCTGGAGTTTTTGCAGAATGTAAAGGCCAAAGATCTGATACGTGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................CTGATACGTGTCGAGGAG..............................................................................................................................................................................	18	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.....................................................AAAGATCTGATACGTGTCGAGGAG..............................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................CTGATACGTGTCGAGGAGA.............................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.................................................GGCCAAAGATCTGATACGT.......................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.....................................................AAAGATCTGATACGTGTCGA..................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................GGCCAAAGATCTGATACGTGT.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................CAAAGATCTGATACGTGTCGAGGA...............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........ACAAAGACAAGGATGTGCTGG.............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GATGTGCTGGAGTTTTTGC....................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
AGGGCGAGGACAAAGACAAGG......................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................GTGCTGGAGTTTTTGCAGAATGTAAA..........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GACAAGGATGTGCTGGAGT..........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................AAGGATGTGCTGGAGTTTTTGC....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................GAGTTTTTGCAGAATGTAAAGGC.......................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............AGACAAGGATGTGCTGGA............................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................TTTTGCAGAATGTAAAGGCC......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................ATACGTGTCGAGGAGAATGT.........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................GATCTGATACGTGTCGAGGAGA.............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................AAGATCTGATACGTGTCGAGGAGAAT...........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................GTGCTGGAGTTTTTGCAG..................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................TGCTGGAGTTTTTGCAGAATGTAAAG.........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................AGATCTGATACGTGTCGAGGAGA.............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................AAAGATCTGATACGTGTCGAGG................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................GGAGTTTTTGCAGAATGTAAA..........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
AGGGCGAGGACAAAGACAAG.......................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................GGCCAAAGATCTGATACGTGTCGAGGA...............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................CTGATACGTGTCGAGGAGAATG..........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................GATACGTGTCGAGGAGAAT...........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................GGCCAAAGATCTGATACGTGTCGA..................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................ATCTGATACGTGTCGAGGAG..............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............AGACAAGGATGTGCTGGAGT..........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................ATGTGCTGGAGTTTTTGCAGAATGT.............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................TGCAGAATGTAAAGGCCAAAG..................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GTTTTTGCAGAATGTAAAGGCC......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGGGCGAGGACAAAGACAAGGATGTGCTGGAGTTTTTGCAGAATGTAAAGGCCAAAGATCTGATACGTGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................GATACGTGTCGAGGAGAAT...........................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3
........................................................GATCTGATACGTGTCGAGGAG..............................................................................................................................................................................	21	1	3.00	3	0	1	0	0	0	2
..........................................................TCTGATACGTGTCGAGGAG..............................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0
.........................................................ATCTGATACGTGTCGAGGAGAATGTTC.......................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..............GACAAGGATGTGCTGGAGT..........................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
..........................................ATGTAAAGGCCAAAGATCTGATAC.........................................................................................................................................................................................	24	1	2.00	2	1	1	0	0	0	0
............AAGACAAGGATGTGCTGGAGTTTTTGC....................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...........AAAGACAAGGATGTGCTG..............................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
........................................GAATGTAAAGGCCAAAGATCTGATACGT.......................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...........................................................CTGATACGTGTCGAGGAGAAT...........................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..GGCGAGGACAAAGACAAGGATGTGCTG..............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..............GACAAGGATGTGCTGGAGTTT........................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.................................................GGCCAAAGATCTGATACGTGTCGAGGA...............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................................................GATACGTGTCGAGGAGAATGTT........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............GACAAGGATGTGCTGGAGTTTTTGC....................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
............................................................TGATACGTGTCGAGGAGAATGTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	25	1	1.00	1	0	1	0	0	0	0
..............GACAAGGATGTGCTGGAG...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
..............................................AAAGGCCAAAGATCTGATACGTGT.....................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................AGTTTTTGCAGAATGTAAA..........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................AAAGGCCAAAGATCTGATACGTGG.....................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................CAAGGATGTGCTGGAGTTTTTG.....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droWil2

AGGGAGAGAATAATGACAAGGATGTCTTGAGTTTTTTGCACAACATCAAGGCCAAAGACTTGATACGTGTAGAGGAACACGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................GATACGTGTAGAGGAACAC...........................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.............................................................GATACGTGTAGAGGAACACGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	24	1	1.00	1	0	0	1	0	0
................................................AGGCCAAAGACTTGATACGG.......................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
.................................................GGCCAAAGACTTGATACGTGT.....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.............................................................GATACGTGTAGAGGAACACGT.........................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...........................................CATCAAGGCCAAAGACTT..............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.......GAATAATGACAAGGATGT..................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.........ATAATGACAAGGATGTCTTGAGT...........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............................................................TGATACGTGTAGAGGAACA............................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..........................................................CTTGATACGTGTAGAGGAA..............................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.............................................................GATACGTGTAGAGGAACACGTCT.......................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0

droVir3

AGGGCGAGAACAATGAGAAGGATGTGCTGCATTTTCTGCAAGCAGCACCAGCCAGGGATCTGATACGCGTGGAGAAGCATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........AATGAGAAGGATGTGCTGC.............................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................ATCTGATACGCGTGGAGAAGCATGT.........................................................................................................................................................................	25	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
.......GAACAATGAGAAGGATGT..................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATGAGAAGGATGTGCTGCAA...........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCATTTTCTGCAAGCAGCACC..........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......AGAACAATGAGAAGGATGTGCT...............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CTGCAAGCAGCACCAGCCAGGGATCTG.............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ATTTTCTGCAAGCAGCACCAGCCA.....................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GATACGCGTGGAGAAGCATGT.........................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCATTTTCTGCAAGCAGCACCAGCCA.....................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ACCAGCCAGGGATCTGATACGCGTG....................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AACAATGAGAAGGATGTGCTGCA............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAACAATGAGAAGGATGTGCTGC.............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TGATACGCGTGGAGAAGCATGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CGAGAACAATGAGAAGGATGTGCTG..............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AGCCAGGGATCTGATACGCGTG....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAACAATGAGAAGGATGTGCTG..............................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AGAACAATGAGAAGGATGTGCTGC.............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......GAACAATGAGAAGGATGTGCT...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TTCTGCAAGCAGCACCAGCCAGG...................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAGAACAATGAGAAGGATGTGCTGCAT...........................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACAATGAGAAGGATGTGCTGC.............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ACCAGCCAGGGATCTGATACGCGT.....................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGGGCGAGGACAACGAGAAGGATGTGCTACAGTTTCTGCAGACAGTGCGTGCCAGGGACCTGATACGCGTGGAGGAGCAGGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................AGGGACCTGATACGCGTGG...................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..GGCGAGGACAACGAGAAGGAT....................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................AGGGACCTGATACGCGTGGAGGAGCA............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.........................GCTACAGTTTCTGCAGACAGTGCGTGCC......................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................GTTTCTGCAGACAGTGCGT.........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.........................GCTACAGTTTCTGCAGACAGTGCGT.........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........GACAACGAGAAGGATGTG.................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droGri2

AAGGCGAGAACAATGAAAAGGATGTGTTGCAGTTTTTGCAAACTGTGAAGGCCAGAGATCTGCTAAGATTGGAGGACAAAGTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_963

3R:6971304-6971454 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.1	-2.9	-2.4