ID:

dya_955

 Coordinate:

3R:6535745-6535895 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.0 -27.7 -27.6

Flybase annnotation

CDS [Dyak\GE24954-cds]; exon [dyak_GLEANR_8602:2]; intron [Dyak\GE24954-in]

Repeatable elements

NameClassFamilyStrand
Hoyak2DNAhAT-Ac+
DNAREP1_DMRCHelitron-
mature
  1. 3L:15061040-15061065 +
  2. 3L:23259969-23259994 +
  3. 3L:23401785-23401810 +
  4. 2L:20553676-20553701 +
  5. 2L:21541777-21541802 +
  6. 2R:27402-27427 +
  7. 2R:981436-981461 +
  8. 3R:218922-218947 +
  9. 3R:2236394-2236419 +
  10. 3R:6680415-6680440 +
  11. 3R:13369853-13369878 +
  12. v2_chrUn_2894:3489-3514 +
  13. v2_chrUn_3609:673-698 +
  14. v2_chrUn_6995:71871-71896 +
  15. v2_chr2L_random_028:1469352-1469377 +
  16. v2_chr3L_random_353:3806-3831 +
  17. v2_chr3h_random_002:142196-142221 +
  18. v2_chrUn_127:43977-44002 +
  19. v2_chrUn_221:262-287 +
  20. v2_chrUn_640:2665-2690 +
  21. 3L:21863429-21863454 -
  22. 2L:15012366-15012391 -
  23. 2L:20319040-20319065 -
  24. 2L:20631154-20631179 -
  25. 2R:339667-339692 -
  26. X:21769572-21769597 -
  27. dya_955  3R:6535832-6535857 -
  28. 3R:7514002-7514027 -
  29. v2_chrUn_1261:202-227 -
  30. v2_chrUn_4246:3500-3525 -
  31. v2_chrUn_6889:1542-1567 -
  32. v2_chrUn_6889:7644-7669 -
  33. v2_chr2L_random_010:382965-382990 -
  34. v2_chr2L_random_019:61302-61327 -
  35. v2_chr2L_random_028:290215-290240 -
  36. v2_chrUn_001:377506-377531 -
  37. v2_chrUn_002:410161-410186 -
  38. v2_chrUn_029:6283-6308 -
  39. v2_chrUn_428:30137-30162 -
  40. v2_chrUn_771:2623-2648 -
  41. 3L:14916216-14916241 +
  42. 3L:20367987-20368012 +
  43. 3L:21552586-21552611 +
  44. 2R:2654746-2654771 +
  45. 2R:4342296-4342321 +
  46. 2R:10350918-10350943 +
  47. 3R:508265-508290 +
  48. v2_chrUn_1092:3201-3226 +
  49. v2_chrUn_2138:918-943 +
  50. v2_chrUn_4632:87-112 +
  51. v2_chrUn_6950:2437-2462 +
  52. v2_chr2L_random_002:111555-111580 +
  53. v2_chr2L_random_010:623839-623864 +
  54. v2_chr2L_random_010:722029-722054 +
  55. v2_chr2h_random_026:339359-339384 +
  56. v2_chrX_random_041:216309-216334 +
  57. v2_chr3R_random_571:1704-1729 +
  58. v2_chrUn_004:502018-502043 +
  59. v2_chrUn_534:70408-70433 +
  60. v2_chrUn_563:1671-1696 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTTCTGCCACGCCCGCTATAACGCCTACAAACCGCCAAAAACTGTGTTTAAGACTCTCCTTTTCCCTTCCACTAGCTGAGTAACGGGTATCAGATAGTCGGGGAACTCGACTATAGCGTTCTCTCTTGTTTTTAATTTGTAAACATTATATGAATGCCAATTTATCACCATATTAAAAGCATTCTCTATCCGGTTTTCAGAAGTACCAAAATTATTAATCCACAGGTGCGTTGCGATGCCAATGGCTACT
**************************************************..........................(((((...((((((....(((((((((...))))))))).((((((.....(((((.........)))))......)))))).............................))))))...)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M056
embryo
 M043
female body
 V046
embryo
.................................................TAAGACTCTCCTTTTCCCTTCCACTAGC.............................................................................................................................................................................. 28 0 20 0.25 5 5 0 0
........................................................................................TATCAGATAGTCGGGGAACTCGACTA......................................................................................................................................... 26 0 20 0.10 2 0 0 2
...............................................TTTAAGACTCTCCTTTTCCCC....................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0
...............................................TTTTAGACTCTCCTTTTCCCTTCCACT................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0
..........................TACAAACCGCCAAAAACTGTGTA.......................................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0
...............................................TTTAAGACTCTCCTTTTCCCTTCC.................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0
.................................................TAAGACTCTCCTTTTCCCTTCCACTAT............................................................................................................................................................................... 27 1 20 0.05 1 0 1 0
.................................................TAAGACTCTCCTTTTCCCTTCCACG................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0

Anti-sense strand reads

GCAAGACGGTGCGGGCGATATTGCGGATGTTTGGCGGTTTTTGACACAAATTCTGAGAGGAAAAGGGAAGGTGATCGACTCATTGCCCATAGTCTATCAGCCCCTTGAGCTGATATCGCAAGAGAGAACAAAAATTAAACATTTGTAATATACTTACGGTTAAATAGTGGTATAATTTTCGTAAGAGATAGGCCAAAAGTCTTCATGGTTTTAATAATTAGGTGTCCACGCAACGCTACGGTTACCGATGA
**************************************************..........................(((((...((((((....(((((((((...))))))))).((((((.....(((((.........)))))......)))))).............................))))))...)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 V058
head
.........................................................................................................................................................................................................................CTAGGTGTCCACGCAAAACTA............. 21 3 2 0.50 1 0 1 0
..AAGACGGTGCGGGCGATATTG.................................................................................................................................................................................................................................... 21 0 4 0.25 1 1 0 0
..........................................................GGAAAAGGGAAGGTGATCGACTCAT........................................................................................................................................................................ 25 0 20 0.25 5 2 3 0
...............................................................AGGGAAGGTGATCGACTCAT........................................................................................................................................................................ 20 0 20 0.25 5 5 0 0
..........................................................................................AGTCTATCAGCCCCTTGAGCTGATA........................................................................................................................................ 25 0 20 0.20 4 4 0 0
................................................................GGGAAGGTGATCGACTCATTGCCCA.................................................................................................................................................................. 25 0 20 0.20 4 4 0 0
......................................................GAGAGGAAAAGGGAAGGTGATCGACT........................................................................................................................................................................... 26 0 20 0.15 3 1 2 0
...........................................................................................................................................................................................................................ACGTGTCCACGCGACGCTGC............ 20 3 9 0.11 1 1 0 0
...........................................................GAAAAGGGAAGGTGATCGACTCAT........................................................................................................................................................................ 24 0 20 0.10 2 2 0 0
........................................................................................................................................................................................GAGCTAGACCAAAAGTTTTC............................................... 20 3 18 0.06 1 0 0 1
............................................................................................................................................................................................................................CGTGTCCACGCGACGCTGC............ 19 3 20 0.05 1 1 0 0
.........................GATGTTTGGCGGTTTTTGACACAAAT........................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0
............................................................AAAAGGGAAGGTGATCGACTCATT....................................................................................................................................................................... 24 0 20 0.05 1 1 0 0
........................................................GAGGAAAAGGGAAGGTGATCGAC............................................................................................................................................................................ 23 0 20 0.05 1 1 0 0
..............................................................AAGGGAAGGTGATCGACTCATTGCCCA.................................................................................................................................................................. 27 0 20 0.05 1 0 1 0
.........................................................AGGAAAAGGGAAGGTGATCGACT........................................................................................................................................................................... 23 0 20 0.05 1 0 1 0
..........................................................................TCGACTCATTGCCCATAGTCTATC......................................................................................................................................................... 24 0 20 0.05 1 1 0 0
....................................................CTGAGAGGAAAAGGGAAGGTGAT................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0
................GATATTGCGGATGTTTGGCGGTTT................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0
.............................................................AAAGGGAAGGTGATCGACTCATTGC..................................................................................................................................................................... 25 0 20 0.05 1 0 1 0
.....................................................TGAGAGGAAAAGGGAAGGTGATCGACT........................................................................................................................................................................... 27 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3R:6535695-6535945 - dya_955 CGTTCTGCCA--CGCCC--GCTATAACG--------------------------------------------------------CCTACAAACCGC-CAAAAACTGTGTTTAAG-----------AC------------------------------------------------------------------------TCTCCTTTTCCCTTCC-----------------------ACTA----GCTGA-GTAACGGGTATCAGATAGTCGGGG-AACT--CGAC-TATAGCGTTCTCTCTTGTTTTTAATTTGT------AAACA-----TTATATGA--------------------------------ATGCCAATTTATCACCATATTAAAAGCATTC---------------------------------------------------------------------------------------TCTATCCGGTTTTCAGAA-GTACCAAAATTATTAATCCACAGGTGCGTTGCGATGCCA------------ATGGC-----------------------------TACT
droEre2 scaffold_4690:18728731-18728979 - CTTTTTGCCA--CGCCC--ACTCTAACG--------------------------------------------------------CCCACAAACTGC-CCAAAATGC-ACTTAAA-----------AC-AAATTTTTTT---TGTTTTTTTTCATTTTAAT-----------------------------------AGTTTTTCCCCACTTTTTCC-----------------------ACTG----GCTGA-GTAAGGGGTATCTGATAGTCCGGG-AAGT--CGAC-TATAGCATACTATCTTGTTTTATATCTGT------CTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCC-GGATGACATAAAT-AT-TTTGTATACCACAATGAAATCATTTTTTAACTCTTGTGTTCCGATGTACTA
droSec2 scaffold_39:327494-327741 + CTTTTTTCCA--CACCT--TG---------GAATAATTTTTAAATTGT----------------------------------------------T-----------------------------------------------------TCTCATTTTATTCCCGAATATCTATCGATATCCCAGAAAAATGAAAAAATT------TGGCATTCAC-----------------------GCCA----GCTGAGGTATCGGTTAACTGATAGTCAGGG-AACT--CGAC-TATAGCATTCTCTCTTTTTTATTCTTTGATTTGATAAATA-----TTGTG-------------------------------------TCACTTT------CATTTTAGATACGTTCTATGTTCTTTTTGA-------------A----------------------------------------------------------------------------A-TATCCTAAATTATGCATCCAA----------------------------------------------------------------AAGT
droSim2 node_102570:6195-6436 + TTTTTTTTTA--TATA----------------------------------------------------------AT------------------------------------------------------------------------TTTTATTTTATTCCCTAATATATATCGATAAGCCAGAAAAATGATGAAATTTTGCGTTGGCATATCC-----------------------AACA----GCTGA-GTAATGAGTATCTGATAATAGGGG-AACT--CGAC-TATAATATTCTCTCTTGCTTTTTTTT-AT------AAATA-----TG-------------------------------------------------------------------------------------TATTTTTTTAAC------TTATTAAAAAATACGTTTTTTATTACTAGTTGTGACTACCAAAGACATTA-TAATAATAA----------------------------------GATGCGTA-------------------------------------------------------ACGA
dm3 chr2R:2835860-2836115 - CTTTTTGCCA--CGTCC--ACTCTAACG--------------------------------------------------------TTCTAAACCTTT-CCA----------------------------------------------------ATTTTTC-----TATATCTATCAATATCCCAGAAAAATTATGAAATTTCGCGTTCGCATTCAC-----------------------ACTA----GCTGA-GAAACGGGTATCTGATAGTCAGGG-AACA--CGAC-TTTAGAATTCTATCTTGTTTTTCATTTCT------AAACAAAATACTAGACGCATGTCTATAGTTCCTA-----------------------------ACCCCATTT---------------------GATATATTTTCCCGAG------TTTTGACAGACGGCAATTTTGTTTAC-----------------------------------------------------------------------------------------------------------------------------------CTGC
droEug1 scf7180000408760:5587-5764 + ATCC-AGCCA--CGCCC--ACTCTAACG--------------------------------------------------------CCCACAAACCGC-AAAACAC-----------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCGTCTATAATAATATTAT-GAAT--CGAC-TATAGCGTTTCCTCTTGTTATTATTT-GAATTAAACACTA-----TTGATAAGA-------------------------------AATCCAATTGAT------TTT---GGTTTTT---------------------------------------------------------------------------------------CCTATTTGGTTTTTAGCACGAACCGATCTTAT-------------------------------------------------------------------------TAA
droBia1 scf7180000302428:856363-856570 - CGT---GCCA--CGCCG--GT----------AGGTGGC---------------GTTATC-------CTTTGGTCAT------------------------------------------------------------------------TATCCTTTTG----------------------------------------------------CTCCC-----------------------TTAA----ACTGA-GTAACGGGTATCTGATAGTCGAGG-CACT--CGAC-TATAGCGTTCTCTCTTGTTTTAATTT-AC------AATCA-----TTTC------------------------------------ATTTATAGG--------TAATAAAAG--------------------------------C------AT------------------------------------------------------ATTAGGGCTTAAGAT-GTTC----ATCATTAAAGCT-AGGTGCCCTAAGA-GACA------------ATGGC-----------------------------AGCT
droTak1 scf7180000415943:14926-15139 + TTTTTTTA----ATC--------------TGTCCATTCGTTAAAAAGTTACGGAGGATCAAAGTTTTTATCTTCATCTT----------------------------------------------------------------------------------------------------------------------------CTTCGCACTCCC-----------------------TTCA----GCTGA-GTAACGGGTATCTGATAGTCGGGG-CACC--CGAC-TATAGCGTTCTCTCTTGTTTTTATAATGC------AAAA----AACTGATCAGCAAACTATTATTATTAGTTAGTTTTC---------------------------------------------------------------------------------------------------------------AAACGTATTATTAGTTTTCA----------------------------------AACG--TTGA------------------------------------------------------GAT
droEle1 scf7180000486264:10211-10412 + TTCT----TG--TGTTT--ACTATGCTG--------------------------------------------------------TTCGACAGATGG-CG------------------GCACCTAAACTTTGATTGTTT---TG-----------TAGG--------------------------GTAAAT---------ACTTAATTTGAATTTT-----------------------GTTG----GCTGA-GTTACGGGTATTTAATTGACAGGA-GACT--CGAC-TATAGCGTTCTCTCTTGTTTTTTATTA-AA-----AGTTA-----TTAAAGAA--------------------------------ATTTTAGGTTCCCAATGTCAACAAGACATTA---------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------ATAT
droRho1 scf7180000764554:1167-1401 + ATTTTTCA------AAT-----------CGGACCATTCGTTAAAAAGTTATGCGTGATCAAAGTTTCTATCTCCATCTC----------------------------------------------------------------------------------------------------------------------------CCTCGCACTCCC-----------------------TTTA----CCTGA-GTAACAGGTATCTGATAGTCGGGG-CACC--CGAC-TATAGCGTTCTCTCTTGTTAATATTTA-AA-----ACGTT-----TTA-------------------------TTTCAAGGACCGATAT-------------------AACCATTT------C-------------TTCTCGAGTTTTTCTAAGTGAACAGATTGATTTATTTT-----------------------------------------------------------------GTT-GGATGCCATA----------------------AGC-----------------------------TAGT
droFic1 scf7180000454115:865698-865811 - TTT---GCCA--CTCCC--ACTTTTACG--------------------------------------------------------CCCACCAGCCTTGT---------------GGCCGT------------------G---TT-----------------------------------------------------------------CAGGCTC-----------------------CATA----TCTAA-GTAACGGGTATCTGGTAGTCGGTG-CTCC--CAAC-TATAGCGTTCTCTCTTGCTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302682:1553037-1553136 + AAGC----TG--TATTT----------------------------------------------------------------------------------------------GAG-----------TCTTTGTTTAATGTTTTG-------------TA------------------------------------------------------ATA-----------------------GAGC----CTTGA-GTGCCGGGTATCTCATATTCGGGG-CACT--CGAC-AATGGCGTTCTTTCTTTGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12943:1058308-1058417 + CCGT----GG--CAGCC-----------AAAAGTATGC---------------------------------------------------------------------------------AACAAAACTTAATTTTATA---AT-----------TATG------------------------------------------------------ATA-----------------------GTTT----TTTGT-GTACCCGGTATCATATAGTCGAGA-AACT--CGAC-TATAATTCCCTT--TTTTTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396356:52682-52870 - CCTA----CATACTCCTGAAGTTTAAAC--------------------------------------------------------TTAAAAG-GTTAGT---------------TAAAGT------------------T---TG-----------------------------------------------------------------CA--TGA-----------------------AAGA----GATGA-GTACCAGGTATAATATAGTCGGGA-AGCT--CGAT-TATATCCGCCGATTCGTTTTTTAAATTTT------ATAAT-----TTATATGT--------------------------------TTATAATTT-------------------------------------------------------------------------------TACTAATTAGTATTATCGAAAATGAAT-TTGTAATCA----------------------------------AATT--TT-------------------------------------------------------TAGA
dp5 Unknown_group_623:16742-16901 + TGACGT-CCA--CGCGC--TTA------------------------------------CTAATTTTCTATCTCTCTCTCATACACTCTT---CGTAGT---------------GAATGT------------------G---TG-----------------------------------------------------------------C--GCTCTCTGGCGAAGAAACTGACTGAGTATCGGATAGAAAT-------------GTAGAGTCGCGG-CCCTAGCGACTTACAACGTTCCCCCTTGTTTTAAATTTGT------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_123:83310-83389 - ACTG----A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGATTATCGGATAGAAAT-------------GTAGAGTCGCGG-CCCTAGCGACTTACAACGTTCCCCCTTGTTTTAAATTTGT------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004585:2966754-2966845 + G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGAA-AATA--CCAA-CAAATCGTTTTCTTTTGTTTTTCCTTTTT------ATTCT-----ATATATGT--------------------------------ATGTATATA--------TAATACAGA--------------------------------A------------------------------------------------------------------------------ATATTGCAATTAT-------------------------------------------------------------------------TTT
droVir3 scaffold_12822:2401277-2401352 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGGGAGCTCC--CGAC-TATAACCTCTTTTCTTGTTTTTCATTTAT------TTATG-----CAA-------------------------ATCGAA-----------------------------------------------------------------------------------------------------------------------------------------------GTTCTGAAAATA--------------------------------------------------------------------------TTA
droMoj3 scaffold_6328:129220-129375 + TTA----CCA--CGTCC--CCTT---CG--------------------------------------------------------CCCCCAATTTGT-AAAAAACGC-------------------------------------------------------------------------------------------------ATTTCA-----------------------AGTACTATCAGATAAGAGG-GTTCAGGGTATCTTCTAGT--------CT--CGAC-TGGAGCCTTCTTACTTGTTTTCAGTTA-AT-----ATTTG-----TTA-------------------------GCTTTAAAGCT-GTAT-------------------AGT--------------------------------T------------------------------------------------------------------------------ATATCGCT-----------------------------------------------------------------------------ATAT
droGri2 scaffold_15203:2142800-2142892 + AAATTTGCAA--ATAAG--ACTATTAT------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT-----------------------AACA----GCTGG-GTTAAGGATATATCGAAGTCGAGCTCACT--CGAC-TACAGCATTCTTGCTTGTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CGTTCTGCCA--CGCCC--GCTATAACG--------------------------------------------------------CCTACAAACCGC-CAAAAACTGTGTTTAAG-----------AC------------------------------------------------------------------------TCTCCTTTTCCCTTCC-----------------------ACTA----GCTGA-GTAACGGGTATCAGATAGTCGGGG-AACT--CGAC-TATAGCGTTCTCTCTTGTTTTTAATTTGT------AAACA-----TTATATGA--------------------------------ATGCCAATTTATCACCATATTAAAAGCATTC---------------------------------------------------------------------------------------TCTATCCGGTTTTCAGAA-GTACCAAAATTATTAATCCACAGGTGCGTTGCGATGCCA------------ATGGC-----------------------------TACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................TAAG-----------AC------------------------------------------------------------------------TCTCCTTTTCCCTTCC-----------------------ACTA----GC...............................................................................................................................................................................................................................................................................................................................................................28200.25500500000000
....................................................................................................................................................................................................................................................................TATCAGATAGTCGGGG-AACT--CGAC-TA.....................................................................................................................................................................................................................................................................................................................26200.10200020000000
............................................................................................................TTTAAG-----------AC------------------------------------------------------------------------TCTCCTTTTCCCC...................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100000000
......................................................................................TACAAACCGC-CAAAAACTGTGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
............................................................................................................TTTAAG-----------AC------------------------------------------------------------------------TCTCCTTTTCCCTTCC-----------------------.........................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
..............................................................................................................TAAG-----------AC------------------------------------------------------------------------TCTCCTTTTCCCTTCC-----------------------ACTA----T................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
..............................................................................................................TAAG-----------AC------------------------------------------------------------------------TCTCCTTTTCCCTTCC-----------------------ACG......................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
droEre2
CTTTTTGCCA--CGCCC--ACTCTAACG--------------------------------------------------------CCCACAAACTGC-CCAAAATGC-ACTTAAA-----------AC-AAATTTTTTT---TGTTTTTTTTCATTTTAAT-----------------------------------AGTTTTTCCCCACTTTTTCC-----------------------ACTG----GCTGA-GTAAGGGGTATCTGATAGTCCGGG-AAGT--CGAC-TATAGCATACTATCTTGTTTTATATCTGT------CTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCC-GGATGACATAAAT-AT-TTTGTATACCACAATGAAATCATTTTTTAACTCTTGTGTTCCGATGTACTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCATTTTTTAACTCTTGTGTTCC.........2711.0011000000
droSec2
CTTTTTTCCA--CACCT--TG---------GAATAATTTTTAAATTGT----------------------------------------------T-----------------------------------------------------TCTCATTTTATTCCCGAATATCTATCGATATCCCAGAAAAATGAAAAAATT------TGGCATTCAC-----------------------GCCA----GCTGAGGTATCGGTTAACTGATAGTCAGGG-AACT--CGAC-TATAGCATTCTCTCTTTTTTATTCTTTGATTTGATAAATA-----TTGTG-------------------------------------TCACTTT------CATTTTAGATACGTTCTATGTTCTTTTTGA-------------A----------------------------------------------------------------------------A-TATCCTAAATTATGCATCCAA----------------------------------------------------------------AAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................GG-AACT--CGAC-TATAGCATTCTCTC.........................................................................................................................................................................................................................................................................................................24200.0511000
droSim2
TTTTTTTTTA--TATA----------------------------------------------------------AT------------------------------------------------------------------------TTTTATTTTATTCCCTAATATATATCGATAAGCCAGAAAAATGATGAAATTTTGCGTTGGCATATCC-----------------------AACA----GCTGA-GTAATGAGTATCTGATAATAGGGG-AACT--CGAC-TATAATATTCTCTCTTGCTTTTTTTT-AT------AAATA-----TG-------------------------------------------------------------------------------------TATTTTTTTAAC------TTATTAAAAAATACGTTTTTTATTACTAGTTGTGACTACCAAAGACATTA-TAATAATAA----------------------------------GATGCGTA-------------------------------------------------------ACGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAA----------------------------------GATGCGTA-------------------------------------------------------ACG.1641.25500000000005000000
...........................................................................................................................................................................................................................................................................TAATAGGGG-AACT--CGAC-TATAATATT..............................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAA----------------------------------GATGCGTA-------------------------------------------------------AC..1540.75300000000003000000
.............................................................................................................................................................................................TGATGAAATTTTGCGTTGGCATA...................................................................................................................................................................................................................................................................................................................................................................................................2330.33100000010000000000
........................................................................................................................................................................................................................................................TGA-GTAATGAGTATCTGATAATAGGGG-AA................................................................................................................................................................................................................................................................................................................................2930.33100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCAAAGACATTA-TAATAATAA----------------------------------GA.................................................................2630.33100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAAGACATTA-TAATAATAA----------------------------------GA.................................................................2530.33100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGTTGTGACTACCAAAGACATTA-..............................................................................................................2730.33100000000010000000
........................................................................................................................................................................................................................................................TGA-GTAATGAGTATCTGATAATAGGGG-A.................................................................................................................................................................................................................................................................................................................................2830.33100000001000000000
.............................................................................................................................................................................................TGATGAAATTTTGCGTTGGC......................................................................................................................................................................................................................................................................................................................................................................................................2030.33100000001000000000
..................................................................................................................................................................................AGCCAGAAAAATGATGAAATTTTGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................2730.33100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAA----------------------------------GATGCGTA-------------------------------------------------------A...1530.33100000000100000000
..........................................................................................................................................................................................AAATGATGAAATTTTGCGTTGGCATA...................................................................................................................................................................................................................................................................................................................................................................................................2630.33100000000010000000
.....................................................................................................................................................................................CAGAAAAATGATGAAATT................................................................................................................................................................................................................................................................................................................................................................................................................18200.30600000000006000000
......................................................................................................................................................................................AGAAAAATGATGAAATT................................................................................................................................................................................................................................................................................................................................................................................................................17200.25500000000005000000
....................................................................................................................................................................................CCAGAAAAATGATGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................18200.20400000000004000000
.........................................................................................................................................................................................................................................................GA-GTAATGAGTATCTGA............................................................................................................................................................................................................................................................................................................................................1760.17100000000001000000
...........................................................................................................................................................................................AATGATGAAATTTTGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................1880.13100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAA----------------------------------GATGCGTA-------------------------------------------------------ACGC18200.10200002000000000000
dm3
CTTTTTGCCA--CGTCC--ACTCTAACG--------------------------------------------------------TTCTAAACCTTT-CCA----------------------------------------------------ATTTTTC-----TATATCTATCAATATCCCAGAAAAATTATGAAATTTCGCGTTCGCATTCAC-----------------------ACTA----GCTGA-GAAACGGGTATCTGATAGTCAGGG-AACA--CGAC-TTTAGAATTCTATCTTGTTTTTCATTTCT------AAACAAAATACTAGACGCATGTCTATAGTTCCTA-----------------------------ACCCCATTT---------------------GATATATTTTCCCGAG------TTTTGACAGACGGCAATTTTGTTTAC-----------------------------------------------------------------------------------------------------------------------------------CTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...............................................................................................................................................................................................................................................................ACGGGTATCTGATAGTCAGGG-..................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ATTTCGCGTTCGCATTCAC-----------------------ACTA----GC...............................................................................................................................................................................................................................................................................................................................................................25200.2040000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000200000000000000000000000000000000000
.................................................................................................................................................................................................................................................A----GCTGA-GAAACGGGTATCTGATAG.........................................................................................................................................................................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TTTCGCGTTCGCATTCAC-----------------------ACTA----GCT..............................................................................................................................................................................................................................................................................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTCAC-----------------------ACTA----GCTGA-GAAACGGGT..................................................................................................................................................................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................ATGAAATTTCGCGTTCGCATT...................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TTTCGCGTTCGCATTCAC-----------------------ACTA----GCTGA-G..........................................................................................................................................................................................................................................................................................................................................................28200.2040000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CAATATCCCAGAAAAATTATGAAATT................................................................................................................................................................................................................................................................................................................................................................................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TCCCAGAAAAATTATGAAATTTCGT............................................................................................................................................................................................................................................................................................................................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TGA-GAAACGGGTATCTGATAG.........................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ACTA----GCTGA-GAAACGGGTATCTGAT...........................................................................................................................................................................................................................................................................................................................................2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTCAC-----------------------ACTA----GCTGA-GAAACGG....................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCGCATTCAC-----------------------ACTA----GCTGA-GA.........................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TATGAAATTTCGCGTTCGCATTCAC-----------------------.........................................................................................................................................................................................................................................................................................................................................................................25190.1630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTTTTGCCA--CGTCC--ACTCTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AAAATTATGAAATTTCGCGTTCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...................................................................................................................................................................................................AATTTCGCGTTCGCATTCAC-----------------------A........................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................TTCGCATTCAC-----------------------ACTA----GCTGA-G..........................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000010000000000000000000000000000
...........................................................................................................................................................................................................GTTCGCATTCAC-----------------------ACTA----GCTGA-...........................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AC-----------------------ACTA----GCTGA-GAAACGGG...................................................................................................................................................................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................TCTATCAATATCCCAGAAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TATCTGATAGTCAGGG-AAC...............................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CAC-----------------------ACTA----GCTGA-GAAACGGGC..................................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ATCTGATAGTCAGGG-AAC...............................................................................................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................C-----------------------ACTA----GCTGA-GAAACGGGT..................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTCAC-----------------------ACTA----GCTGA-GAAACGGGC..................................................................................................................................................................................................................................................................................................................................................2380.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................TCGCATTCAC-----------------------ACTA----GCTGA-GAAACGGA...................................................................................................................................................................................................................................................................................................................................................2780.1310000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................C-----------------------ACTA----GCTGA-GAAACGGG...................................................................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................TGA-GAAACGGGTATCTGATA..........................................................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................ACGGGTATCTGATAGTCAGG....................................................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TTATGAAATTTCGCGTTCGC......................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GAAAAATTATGAAATTTCGCGTTCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCGCATTCAC-----------------------ACTA----GCTGA-...........................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................CCCAGAAAAATTATGAAATTTCGCGTTC........................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................CCCAGAAAAATTATGAAATTTCGT............................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AATTTCGCGTTCGCATTCAC-----------------------ACTA----GC...............................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................TTATGAAATTTCGCGTTCGCATT...................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................CTA----GCTGA-GAAACGGGT..................................................................................................................................................................................................................................................................................................................................................17100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAATTATGAAATTTCGCGTTCGCATT...................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AAAATTATGAAATTTCGCGTTCGCATT...................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTCGCGTTCGCATTCAC-----------------------ACTA----.................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................CGCGTTCGCATTCAC-----------------------ACTA----GCTGA-...........................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................ATTATGAAATTTCGCGTTCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................CCAGAAAAATTATGAAATTTCGCGTT.........................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATTATGAAATTTCGCGTTCGCATT...................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................TATCCCAGAAAAATTATGAAATT................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
........................................................................................................................................................................................................CGCGTTCGCATTCAC-----------------------ACTA----GCT..............................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................CTAACG--------------------------------------------------------TTCTAAACCTCG-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TATGAAATTTCGCGTTCGCATTCAC-----------------------ACT......................................................................................................................................................................................................................................................................................................................................................................28120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
ATCC-AGCCA--CGCCC--ACTCTAACG--------------------------------------------------------CCCACAAACCGC-AAAACAC-----------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCGTCTATAATAATATTAT-GAAT--CGAC-TATAGCGTTTCCTCTTGTTATTATTT-GAATTAAACACTA-----TTGATAAGA-------------------------------AATCCAATTGAT------TTT---GGTTTTT---------------------------------------------------------------------------------------CCTATTTGGTTTTTAGCACGAACCGATCTTAT-------------------------------------------------------------------------TAASizeHit CountTotal NormTotal
No Reads
droBia1
CGT---GCCA--CGCCG--GT----------AGGTGGC---------------GTTATC-------CTTTGGTCAT------------------------------------------------------------------------TATCCTTTTG----------------------------------------------------CTCCC-----------------------TTAA----ACTGA-GTAACGGGTATCTGATAGTCGAGG-CACT--CGAC-TATAGCGTTCTCTCTTGTTTTAATTT-AC------AATCA-----TTTC------------------------------------ATTTATAGG--------TAATAAAAG--------------------------------C------AT------------------------------------------------------ATTAGGGCTTAAGAT-GTTC----ATCATTAAAGCT-AGGTGCCCTAAGA-GACA------------ATGGC-----------------------------AGCTSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTTTTA----ATC--------------TGTCCATTCGTTAAAAAGTTACGGAGGATCAAAGTTTTTATCTTCATCTT----------------------------------------------------------------------------------------------------------------------------CTTCGCACTCCC-----------------------TTCA----GCTGA-GTAACGGGTATCTGATAGTCGGGG-CACC--CGAC-TATAGCGTTCTCTCTTGTTTTTATAATGC------AAAA----AACTGATCAGCAAACTATTATTATTAGTTAGTTTTC---------------------------------------------------------------------------------------------------------------AAACGTATTATTAGTTTTCA----------------------------------AACG--TTGA------------------------------------------------------GATSizeHit CountTotal NormTotal
No Reads
droEle1
TTCT----TG--TGTTT--ACTATGCTG--------------------------------------------------------TTCGACAGATGG-CG------------------GCACCTAAACTTTGATTGTTT---TG-----------TAGG--------------------------GTAAAT---------ACTTAATTTGAATTTT-----------------------GTTG----GCTGA-GTTACGGGTATTTAATTGACAGGA-GACT--CGAC-TATAGCGTTCTCTCTTGTTTTTTATTA-AA-----AGTTA-----TTAAAGAA--------------------------------ATTTTAGGTTCCCAATGTCAACAAGACATTA---------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------ATATSizeHit CountTotal NormTotal
No Reads
droRho1
ATTTTTCA------AAT-----------CGGACCATTCGTTAAAAAGTTATGCGTGATCAAAGTTTCTATCTCCATCTC----------------------------------------------------------------------------------------------------------------------------CCTCGCACTCCC-----------------------TTTA----CCTGA-GTAACAGGTATCTGATAGTCGGGG-CACC--CGAC-TATAGCGTTCTCTCTTGTTAATATTTA-AA-----ACGTT-----TTA-------------------------TTTCAAGGACCGATAT-------------------AACCATTT------C-------------TTCTCGAGTTTTTCTAAGTGAACAGATTGATTTATTTT-----------------------------------------------------------------GTT-GGATGCCATA----------------------AGC-----------------------------TAGTSizeHit CountTotal NormTotal
No Reads
droFic1
TTT---GCCA--CTCCC--ACTTTTACG--------------------------------------------------------CCCACCAGCCTTGT---------------GGCCGT------------------G---TT-----------------------------------------------------------------CAGGCTC-----------------------CATA----TCTAA-GTAACGGGTATCTGGTAGTCGGTG-CTCC--CAAC-TATAGCGTTCTCTCTTGCTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGC----TG--TATTT----------------------------------------------------------------------------------------------GAG-----------TCTTTGTTTAATGTTTTG-------------TA------------------------------------------------------ATA-----------------------GAGC----CTTGA-GTGCCGGGTATCTCATATTCGGGG-CACT--CGAC-AATGGCGTTCTTTCTTTGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCGT----GG--CAGCC-----------AAAAGTATGC---------------------------------------------------------------------------------AACAAAACTTAATTTTATA---AT-----------TATG------------------------------------------------------ATA-----------------------GTTT----TTTGT-GTACCCGGTATCATATAGTCGAGA-AACT--CGAC-TATAATTCCCTT--TTTTTTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CCTA----CATACTCCTGAAGTTTAAAC--------------------------------------------------------TTAAAAG-GTTAGT---------------TAAAGT------------------T---TG-----------------------------------------------------------------CA--TGA-----------------------AAGA----GATGA-GTACCAGGTATAATATAGTCGGGA-AGCT--CGAT-TATATCCGCCGATTCGTTTTTTAAATTTT------ATAAT-----TTATATGT--------------------------------TTATAATTT-------------------------------------------------------------------------------TACTAATTAGTATTATCGAAAATGAAT-TTGTAATCA----------------------------------AATT--TT-------------------------------------------------------TAGASizeHit CountTotal NormTotal
No Reads
dp5
TGACGT-CCA--CGCGC--TTA------------------------------------CTAATTTTCTATCTCTCTCTCATACACTCTT---CGTAGT---------------GAATGT------------------G---TG-----------------------------------------------------------------C--GCTCTCTGGCGAAGAAACTGACTGAGTATCGGATAGAAAT-------------GTAGAGTCGCGG-CCCTAGCGACTTACAACGTTCCCCCTTGTTTTAAATTTGT------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................TGACTGAGTATCGGATAGAAAT-------------G..............................................................................................................................................................................................................................................................................................................................................2312.0020200000000
..............................................................................................................................................................................................................................................................................TCGCGG-CCCTAGCGACTTACAACGT...............................................................................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................ATCGGATAGAAAT-------------GTAGAGTCGC.....................................................................................................................................................................................................................................................................................................................................2311.0010000000010
.....................................................................................................................................................................................................................................TGACTGAGTATCGGATAGAAAT-------------GT.............................................................................................................................................................................................................................................................................................................................................2411.0010000001000
droPer2
ACTG----A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGATTATCGGATAGAAAT-------------GTAGAGTCGCGG-CCCTAGCGACTTACAACGTTCCCCCTTGTTTTAAATTTGT------AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................TCGGATAGAAAT-------------GTAGAGTCGCGG-CCC...............................................................................................................................................................................................................................................................................................................................2711.001100000
droWil2
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGAA-AATA--CCAA-CAAATCGTTTTCTTTTGTTTTTCCTTTTT------ATTCT-----ATATATGT--------------------------------ATGTATATA--------TAATACAGA--------------------------------A------------------------------------------------------------------------------ATATTGCAATTAT-------------------------------------------------------------------------TTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGGGAGCTCC--CGAC-TATAACCTCTTTTCTTGTTTTTCATTTAT------TTATG-----CAA-------------------------ATCGAA-----------------------------------------------------------------------------------------------------------------------------------------------GTTCTGAAAATA--------------------------------------------------------------------------TTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTA----CCA--CGTCC--CCTT---CG--------------------------------------------------------CCCCCAATTTGT-AAAAAACGC-------------------------------------------------------------------------------------------------ATTTCA-----------------------AGTACTATCAGATAAGAGG-GTTCAGGGTATCTTCTAGT--------CT--CGAC-TGGAGCCTTCTTACTTGTTTTCAGTTA-AT-----ATTTG-----TTA-------------------------GCTTTAAAGCT-GTAT-------------------AGT--------------------------------T------------------------------------------------------------------------------ATATCGCT-----------------------------------------------------------------------------ATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................TCA-----------------------AGTACTATCAGATAAGAGG-G..........................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................CT--CGAC-TGGAGCCTTCTTACTTGTT....................................................................................................................................................................................................................................................................................................25200.95191900000
droGri2
AAATTTGCAA--ATAAG--ACTATTAT------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT-----------------------AACA----GCTGG-GTTAAGGATATATCGAAGTCGAGCTCACT--CGAC-TACAGCATTCTTGCTTGTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:49 PM