dya_925

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGCGTCGATATTGCTAACAATATCAAATACTTTTCTCAAACTCTACTGAGTAAGTACTTTTAGAGGACATAGACTCCTTTTTATACCCGTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTAAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCACGATCAATAGCCGAGTCCATTTAGCCATGTCCGTCTGTCCGTCCGTCTGTCTCTCTGTATGA ************************************************((..((((((((.((.((..(((.........(((((((.((((((...))))))..))))))))))...)).)).))))))))...)).(((....((((....))))((..(((((.....)))))..))(((((....)))))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	V120 male body	M056 embryo
........................................ACTCGGCTGAGTAAGTGCTTTT.............................................................................................................................................................................................	22	3	4	0.25	1	1	0	0
...............................................................................................................ATACTAGATTCGTTAAAAAGT.......................................................................................................................	21	0	20	0.15	3	0	3	0
.................................................................................................................................................................................................................TTAGCCATGTCCGTCTGTCCGTCCGTC...............	27	0	7	0.14	1	0	0	1
............................................................................................................................TAAAAAGTATGTAACAGGCAGAAGG......................................................................................................	25	0	20	0.05	1	1	0	0
...................................................................................................................................................................................................................AGCCATGTCCGTCTGTCCGTC...................	21	0	20	0.05	1	0	1	0
...................................................................................................GAGTAAAAGGGTATACTAGATTCGTTA.............................................................................................................................	27	0	20	0.05	1	1	0	0

ACCGCAGCTATAACGATTGTTATAGTTTATGAAAAGAGTTTGAGATGACTCATTCATGAAAATCTCCTGTATCTGAGGAAAAATATGGGCAATGAGCATCTCATTTTCCCATATGATCTAAGCAATTTTTCATACATTGTCCGTCTTCCTTCGCAAAGGCTGGTATATTTCATATATATAAGAACTAGTGCTAGTTATCGGCTCAGGTAAATCGGTACAGGCAGACAGGCAGGCAGACAGAGAGACATACT ************************************************((..((((((((.((.((..(((.........(((((((.((((((...))))))..))))))))))...)).)).))))))))...)).(((....((((....))))((..(((((.....)))))..))(((((....)))))..)))************************************************	Read size	Hit Count	Total Norm	Total	M043 female body	M026 head	M056 embryo
.............................................................................................................................TTTTTCATACATTGTCCGTCTTCCTT....................................................................................................	26	20	0.15	3	2	0	1
..........................................................................................................TCCCATATGATCTAAGCAATT............................................................................................................................	21	20	0.05	1	1	0	0
..............................................................................................................................................................GCTGGTATATTTCATATA...........................................................................	18	20	0.05	1	0	1	0
............................................................................GGAAAAATATGGGCAATGAGCATCTC.....................................................................................................................................................	26	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droYak3	3R:3774194-3774444 -	dya_925	TGGCGTCGATATTGCTAAC----AATA------TCAAATAC---TT----TTCTC------AAACTCTA--------------------------------CTGAGTAAGT--ACTTTTAGAGG-----------------------------------------------------A----------------------------------CA--TAGACTCCTTTTTATACCCGTTACTCGT------AGAG-TAAAAGGGT----ATACTAGATTCGTTAAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCACGATCAATAGCCGAGTCCATTTAGCCATGTCCGTCTGTCCGTCCGTCT----GTCTCTCTGTA----TGA
droEre2	scaffold_4784:25040194-25040430 +		TTG-----ATAATACCAAC----A---------TTAAA-------------GAGC------AGATAAAA----------------------------------------------------------CTTTAAAAGTTCCTGAG--AGACTATTC---------------------------------------------TCAAATT--------------GAATAATTATACCCGTTACTCGT------AGAG-TAAAAGGGT----ATACTAGATTCGTTGAA-------AAGTATGTAATAGGCAGAAGAAAACGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGGCGAGTCGATCTGGCCAAGTCCGTTTGTCCGTCC--------GTCTGTTCGTA----TGA
droSec2	scaffold_55:52890-53108 +		TGAAATGGATACTATTTAG----ATTG------CC--------------------------AAACAT-A-------------TCTAGTTA--CTAAGCTG-GG-------------------------------TGTAC--------------------------------------A----------------------------------TA--TATATTAATTTTTATACTCG-------T------AG-----GAAGGGT----ATACTAGATTCTTTGAA-------AAGTATGTAACAGACAGAAGGAAGCGTTTCCGACTATATA-AGTATATATATTCTTGATCAGGACCAATAGCCGAATCGATCTGGCCATGTCCGACTGTCCG------------TCTGTTCGTA----TAA
droSim2	x:20110351-20110583 +		TCA-----TTATTTTTAAA----ATTA------TTTAAT---------GA----CTTTTACAAATATTTTCTAGCGTGTATAATA--------------------------------------------------------------------------------------TTGTGTACT--------------------------------------ACATCAATTTTATACCCCTTACTCGT------AGAG-TAAAAGGGT----ATACTAGATTTGTTGAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATTATTAGCCGAGTCGATCTAGCCATGTCAGTCTGTC----------------TGTCCGTT----TAA
dm3	chrX:21376856-21377071 +		CAGTA------TTTTTAAA----ATTA------TTTAAT---------GT----ACTTTACAAATATTTTCTAG--------------------------------------------------------------------------------------------------TGTGTACT--------------------------------------ACATAAATTTTATACCCGTTACTCGT------AGAG-TAAAAGGAT----ATACTAGATTCGTTGAA-------AAGTATATAACAGGCGTAAGGAAACGTTTCCGACTCTATAAAGTATATATATTCTTGATTAGGATCAATAGCCTAATCGATCTAGCCATGTCCGTCT--------------------GTTCGTA----TGA
droEug1	scf7180000409472:667769-668010 -		GGTTT-CGATAATCG--AAA---AATT------TGAAAT------------TCGCG------AAATTTG--------------------------------AAGAGTCACCTTACTTTTTGAAC-----------------------------------------------------ACA------------------------------CC-TCGTACATTTATTTTTATACCCGTTACTAGT------GGAG-TAAGAGGGT----ATACTAGATTCATTGA--------AAGTATGTAACAGCTAGAAGGAAGCCTTTCCGACCCTATAAAGTATAAATATTCTTGATCAGGATCAATAGCGTAGTCGATTAAGCCATGTCCGTCTGTCCG------------TCTGTCCGTA----TGA
droBia1	scf7180000301512:22489-22726 -		ATT----------TCTAAG----AATATCAACAT-AAATAG---TT---------------------------------------T---------ATTTCTATAAATTT------------------------------------------ATTC---------------------------------------------TTACAATAAA--TA--TATTCTTCTTTTTATACCCGTTACTCGT------ACAG-TAAAAGAGT----ATACTAGATTCGTCGGA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCTCATAAAGTATATATGTTTTTGATCAGAATCACTAGCTGAGTCGATCTAGCCATAGCCGTCTGTCTGTCTGT------GACTGTCCGTA----TGA
droTak1	scf7180000415434:3057-3303 -		TATTA---------CTATT----AATA------TGTAATAT---TT-------AC--------------------------------------TCAGCTA-ATAAATCACT------------CACACCTTTAATGTATTTA--------------------------------------------------------------------------AGTGCTAATAGTTATACCCGTTACTCGT------AGAG-TAAAAAGGT----ATATTAGATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCTGTCTGTCC----GTCTGTCCGTCTGTATGA
droEle1	scf7180000491240:1440233-1440475 +		GAAAA-------TGTTAACAAA-AAGA------AAAGGTAC---TT----TAATT------AAATATTA--------------------------------A--------------------------------------T-------------------------------GGAAAACTCCA--TTCAAATTCAGAACA----------AA-T--TAGTTTTATTTTTATACCCT-----TGC------A-------GAGGGT----ATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCT----GTCCGTCCGTC----TGT
droRho1	scf7180000774239:633-868 +		TGCGA----TTTTCTTGAA----AATA------GTAAAAAC---TT----TTT--------------------------------A---------ATTTGTGTATATCT------------------------------------------AT--------------------ATGCACA------------------------------GC-T--TATACTTATTTTTATACCCGTTACTCGT------AGAG-TAAAAGGGT----ATATTGTATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCTTCT--------GTCTGTCCGTA----TGA
droFic1	scf7180000449914:25032-25281 +		GTTAA----TATTGCTTAT----AAAA------TATTGTGCTTATTAAAA----ATTTTACAGATATCTTCTAAAAAATAGCTTC--------------------------------------------------------------------------------------AGGTAAACT--------------------------------------GAATCGTTTTTATACCCT-----TGC------AGAG-CAAAAGGGT----ATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACCATCTGAATCGAAATATGTATGTACGTCTGTCCGTCTGTCC----GTCTGTCCGTC----TGT
droKik1	scf7180000301730:6667-6889 -		ATT----------GCAAACA---AATA------TGAAATGTATCCTGAAA----CATTAAGAAATATATTATAAC------------------------------------------------------------------------------------------------------A----------------------------------TA--TAACATTCTTATTATACCCT-----TG---------------CAGGGT----ATTATAATTTCAGTCAG-------AAGTTTGAAACGCAGTGAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCC----GTCTGTCTGTT----TCT
droAna3	scaffold_13417:2500526-2500763 -		CGTAA---ATACTTTTCACAA----GA------TCAAATAA---T---CG----TTTTC--AAAAAT-G-------------TTCAAT----------------------------------------------CGTT--TGAGT----------------------------ATGAATT------------------------------GC-T--GATATACATTTTTATACCCT-----TGC------A-------GAGGGT----ATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCCCCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCC----GTCTGTCCGTC----TGT
droBip1	scf7180000395882:23680-23918 -		ATA--------TTTTTAACA---ATTA------TTTTAT---------AT----ATTTTTTAAACTAGTACTAG----------------------------------------------------------------------------------------------TACCAGTGCACTGCA--CTATGGTC-------------------CA--GAACCCGTTTTTTATACCCT-----TGC------A-------GAGGGT----ATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCC----GTCTGTCCGTC----TGT
dp5	Unknown_group_27:18054-18312 -		GACAA-------CGCTGAAA---ATCT------T----TAT---TT-----TCCCC-----AAATTAAAG-TAAGAAA---------------TAGGCTA-AG------------------AGA-----------------------------------------------------ACCCCA--A-AT-------------------AG--TG--AGGCCTTTTTTTTATACCCGATACTCAA----AATGAG-TATTGGGGT----ATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATGTATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCC----GTCTGTCCGTC----TGT
droPer2	scaffold_396:6742-6995 -		GCATA--GATATTAATA----------------C-ATATA-----T--AC----AT-------------------------------------------ATGTACATCT------------------------------------------AACCCTGTTGGACGCAAT-------AACTACA--C--------------A-----------TA--T-AACTCATTTTTATACCCGATACTCAA----AATGAG-TATTGGGGT----ATATTAGATTTGTGGTAAAAGTGTATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCC----GTCTGTCCGTC----TGT
droWil2	scf2_1100000004968:1782621-1782868 +		TTG-----GTATTGGTATT----GATA------TGAGATAT---TT--GGATCGC------AGATAATA--------------------------------G------------------------------------------------------------------TAACTGCGTACT---CATTACCG--------------------------TTCGTTGTTTTTATACCATACACCCAT------AGGG-TGAAATGGT----ATATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGAATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCGGTCCGTCCGTCCGTCTGTCCGTA----TGA
droVir3	scaffold_12799:456701-456957 +		GAT-------ATTTCTAACGAGTCTTA------TAAAACAT---AT-------------------------------------TCTATTATAC-----------------------------------------GTTT--TGATTCAGAATTTCT---------------------------------------------TTAAAAT----------AAATATTTTTTTTAACCCATTAAAAA-------TGGG-TATAAGGGTAAGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATACATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCC---CGTCCGTATGTA----TGA
droMoj3	scaffold_6408:46572-46818 +		ATT----------ATTAAG----CATA------AGATATAA---TT----TTCGCT------TTATCTC--------------------------------ATAAATTGAT--CAAT--------------------------------------------------------TTCAACT------------------------------A-TA--TATATTTCTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGT----ATAATGGTTTTGT-GAA-------AAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGATGACGAGCTGAGTCGATATAGCCCTGTCCGTCCCTCCGTCCGTCC----GTCCGTCCGTA----TGA
droGri2	scaffold_14906:3046476-3046722 +		GTTTA----TGTATCTCACAA--GCTA------CGAAATAT---TT-------------------------------------TCAGCAAAGCTATTTTGAG--------------------------------CATT--T--------------------------------ATATATT---TAAA--------------------------T--TAGCCTGTTTTTTATATTTT-------G---AGATTCT-TATAAGGCT----ATATTGGAGTTTTGGAA-------AAGTACGTAACAGGCTGGAGGAAGCTTCTCCAAC-CTATAAATTATATTTATTCTTGATCAGAATAAACAGCTTAATCGATTTAGCCATGTACGTATGTTTGTCCGTCGTTCCGACCGTCTGAA----TGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

TGGCGTCGATATTGCTAAC----AATA------TCAAATAC---TT----TTCTC------AAACTCTA--------------------------------CTGAGTAAGT--ACTTTTAGAGG-----------------------------------------------------A----------------------------------CA--TAGACTCCTTTTTATACCCGTTACTCGT------AGAG-TAAAAGGGT----ATACTAGATTCGTTAAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCACGATCAATAGCCGAGTCCATTTAGCCATGTCCGTCTGTCCGTCCGTCT----GTCTCTCTGTA----TGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................ATACTAGATTCGTTAAA-------AAGT...............................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TTAGCCATGTCCGTCTGTCCGTCCGTC.......................	27	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAAA-------AAGTATGTAACAGGCAGAAGG..............................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................AGCCATGTCCGTCTGTCCGTC...........................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................GAG-TAAAAGGGT----ATACTAGATTCGTTA............................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TTG-----ATAATACCAAC----A---------TTAAA-------------GAGC------AGATAAAA----------------------------------------------------------CTTTAAAAGTTCCTGAG--AGACTATTC---------------------------------------------TCAAATT--------------GAATAATTATACCCGTTACTCGT------AGAG-TAAAAGGGT----ATACTAGATTCGTTGAA-------AAGTATGTAATAGGCAGAAGAAAACGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGGCGAGTCGATCTGGCCAAGTCCGTTTGTCCGTCC--------GTCTGTTCGTA----TGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................AAAAGGGT----ATACTAGATTCGT..............................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0	0
...................................................................................................................................................................................................................................................T------AGAG-TAAAAGGGT----ATACTAGATTC................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................TATACCCGTTACTCGT------AGAG-T.......................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................AACGTTTCCGACCATATAAAGT.......................................................................................	22	20	0.05	1	0	0	0	0	0	1	0

droSec2

TGAAATGGATACTATTTAG----ATTG------CC--------------------------AAACAT-A-------------TCTAGTTA--CTAAGCTG-GG-------------------------------TGTAC--------------------------------------A----------------------------------TA--TATATTAATTTTTATACTCG-------T------AG-----GAAGGGT----ATACTAGATTCTTTGAA-------AAGTATGTAACAGACAGAAGGAAGCGTTTCCGACTATATA-AGTATATATATTCTTGATCAGGACCAATAGCCGAATCGATCTGGCCATGTCCGACTGTCCG------------TCTGTTCGTA----TAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................ATACTAGATTCTTTGAA-------AAGT...............................................................................................................................	21	8	0.25	2	0	1	0	1
..............................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGACCAT...............................................................	26	5	0.20	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................AGACAGAAGGAAGCGTTTCCG...................................................................................................	21	6	0.17	1	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGA...................................................................	22	20	0.05	1	1	0	0	0

droSim2

TCA-----TTATTTTTAAA----ATTA------TTTAAT---------GA----CTTTTACAAATATTTTCTAGCGTGTATAATA--------------------------------------------------------------------------------------TTGTGTACT--------------------------------------ACATCAATTTTATACCCCTTACTCGT------AGAG-TAAAAGGGT----ATACTAGATTTGTTGAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATTATTAGCCGAGTCGATCTAGCCATGTCAGTCTGTC----------------TGTCCGTT----TAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTT.......................................................................................................	25	20	15.60	312	0	0	2	5	0	0	4	0	29	65	49	0	147	11	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGA.............................................................................................................	24	20	14.50	290	0	0	0	0	0	0	40	38	32	3	10	0	158	9	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAA............................................................................................................	25	18	11.61	209	0	0	0	0	0	0	13	34	27	3	6	0	125	1	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAAG...........................................................................................................	26	16	7.63	122	0	0	0	0	0	0	2	3	5	1	1	0	106	4	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGT........................................................................................................	24	20	6.30	126	0	0	6	1	0	0	5	26	27	35	20	1	0	5	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-TAAAAGGG................................................................................................................................................................	28	7	4.86	34	0	0	0	4	0	0	8	3	10	5	4	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAAGC..........................................................................................................	27	16	4.56	73	0	0	0	2	0	0	0	1	0	0	4	0	62	4	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGG..............................................................................................................	23	20	3.10	62	0	0	0	0	0	0	3	13	5	1	2	1	36	1	0	0	0
....................................................................................................................................................................................................................................................................................TTTGTTGAA-------AAGTATGTAACAGGTA...................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCG.........................................................................................................	23	20	2.65	53	0	0	0	0	20	0	0	0	2	6	6	0	19	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TTAGCCGAGTCGATCTAGCCATGTCA......................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTATTAGCCGAGTCGATCTAGCCA...........................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTTGTTGAA-------AAGTATGTAACAGGTAGA.................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTTGTTGAA-------AAGTATGTAACAGGTAGAA................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTTGTTGAA-------AAGTATGTAACAGGTAGAAG...............................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-TAAAAGG.................................................................................................................................................................	27	7	1.57	11	0	0	0	0	0	0	2	1	5	2	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATTATTAGCCGAGT......................................................	28	2	1.50	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAAGCG.........................................................................................................	28	14	1.14	16	0	0	0	0	0	0	0	0	1	0	0	0	14	1	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-TAAA....................................................................................................................................................................	24	8	1.13	9	0	0	0	1	0	0	1	0	6	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAAT...........................................................................................................	26	20	1.10	22	0	0	0	0	0	0	1	2	0	0	0	0	16	3	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCAGT....................................	25	4	1.00	4	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGT.............................................................................................................	24	20	1.00	20	0	0	0	0	0	0	0	0	0	1	0	0	18	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TATTAGCCGAGTCGATCTAGCCATGT........................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCAGTCTGTC----------------...............	28	3	1.00	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCAGTCTGTC----------------TGTCCGT........	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTATTAGCCGAGTCGATCTAGCCATGT........................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTTGTTGAA-------AAGTATGTAACAGGT....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCAGTCTGTC----------------TGTCCGTT----...	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GGGT----ATACTAGATTTGTTGAA-------AAGTA..............................................................................................................................	26	8	1.00	8	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGATTA................................................................	25	5	1.00	5	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTC.......................................	24	20	0.95	19	0	0	0	0	0	0	3	3	0	3	10	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGATT.................................................................	24	6	0.83	5	0	0	1	0	0	0	0	2	1	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGAA-------AAGTATGTAACAGGTAGAAGGA.............................................................................................................	26	14	0.71	10	0	0	0	0	0	0	3	3	2	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTT.......................................................................................................	23	20	0.70	14	0	0	0	0	0	0	0	0	0	0	0	0	11	3	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCAGTCTGT................................	24	3	0.67	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCAGTCT..................................	25	3	0.67	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCAGTCTG.................................	26	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCAGTCTGT................................	27	3	0.67	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAAGT..........................................................................................................	27	20	0.60	12	0	0	0	0	0	0	0	0	1	0	0	0	4	7	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAG...............................................................................................................	22	20	0.60	12	0	0	0	0	0	0	0	0	1	0	3	0	8	0	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-TAAAAG..................................................................................................................................................................	26	7	0.57	4	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................TACCCCTTACTCGT------AGAG-TAAAAGGG................................................................................................................................................................	26	7	0.57	4	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCAGT....................................	27	4	0.50	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGC..........................................................................................................	22	20	0.50	10	0	0	1	0	0	0	0	0	1	3	0	1	3	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATTATTAGC...........................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTATTAGCCGAGT......................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTTTATACCCCTTACTCGT------AGAG-TAAA....................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CAGGATTATTAGCCGAGTCGATC.................................................	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCAG.....................................	26	4	0.50	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGAT..................................................................	23	20	0.50	10	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTT......................................................................................................	24	20	0.50	10	0	0	0	0	0	0	0	0	1	0	0	0	7	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCAG.....................................	24	4	0.50	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAG...........................................................................................................	21	20	0.40	8	0	0	0	0	0	0	0	0	0	4	1	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTC.......................................	22	20	0.40	8	0	0	0	0	0	0	0	6	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTTT......................................................................................................	26	20	0.40	8	0	0	0	2	0	0	0	2	0	2	0	0	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTTTC.....................................................................................................	27	18	0.39	7	0	0	0	0	0	0	1	2	0	0	1	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTC.....................................................................................................	25	18	0.39	7	0	0	0	0	0	0	0	0	0	0	1	0	5	1	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-TAAAA...................................................................................................................................................................	25	8	0.38	3	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAAGCGT........................................................................................................	29	14	0.36	5	0	0	0	0	0	0	0	0	1	0	0	0	1	3	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCAGTCTGTC----------------...............	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-TAAAAGGGT----A..........................................................................................................................................................	30	6	0.33	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCAGTCTGTC----------------...............	24	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TAAAAGGGT----ATACTAGATTTGTTGAA-------...................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GGGT----ATACTAGATTTGTTGAA-------A..................................................................................................................................	22	13	0.31	4	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAAGCGTT.......................................................................................................	30	14	0.29	4	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TACCCCTTACTCGT------AGAG-TAAAAGG.................................................................................................................................................................	25	7	0.29	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-TAAAAGGGT----...........................................................................................................................................................	29	7	0.29	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGAG-TAAAAGGGT----ATACTAGATTTGT..............................................................................................................................................	26	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAG...............................................................................................................	17	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...................................................................................................................................................................................................................................................T------AGAG-TAAAAGGGT----ATACTAGATTTGT..............................................................................................................................................	27	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAA-------AAGTATGTAACAGGTAGAAGGA.............................................................................................................	25	16	0.25	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
................................................................................................................................................................................................................................................TCGT------AGAG-TAAAAGGGT----ATACT......................................................................................................................................................	22	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCAGTC...................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCAGTC...................................	28	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TTAGCCGAGTCGATCTAGCCATGTC.......................................	25	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GGTAGAAGGAAGCGTT.......................................................................................................	16	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGATCAGGA...................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GGGT----ATACTAGATTTGTTGAA-------AAG................................................................................................................................	24	10	0.20	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGG..............................................................................................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATG.........................................	22	20	0.20	4	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACTCGT------AGAG-TAAAAGGG................................................................................................................................................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GTAGAAGGAAGCGTT.......................................................................................................	15	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAAGA..........................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0
........................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAGCGTT.......................................................................................................	24	20	0.20	4	0	0	0	1	0	0	0	0	0	0	1	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTCC....................................................................................................	26	16	0.19	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
.......................................................................................................................................................................................................................................................................................GTTGAA-------AAGTATGTAACAGGTAGAAGG..............................................................................................................	27	11	0.18	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTACTCGT------AGAG-TAAAA...................................................................................................................................................................	18	12	0.17	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTTGAA-------AAGTATGTAACAGGTAGAA................................................................................................................	25	18	0.17	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................A-------AAGTATGTAACAGGTAGAAGGAAGC..........................................................................................................	26	19	0.16	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCG...................................................................................................	25	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................TCGT------AGAG-TAAAAGGGT----ATACTAG....................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGT....................................................................................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTC.......................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AGGTAGAAGGAAGCGTT.......................................................................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAAGCGTT.......................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
............................................................................................................................................................................................................................................TTACTCGT------AGAG-TAAAAGGG................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAAGCGT........................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATG.........................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ACAGGTAGAAGGAAGCGTT.......................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TACTCGT------AGAG-TAAAAGGG................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ACAGGTAGAAGGAAGC..........................................................................................................	16	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTC.....................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAA-------AAGTATGTAACAGGTAGAAGGAA............................................................................................................	26	15	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................GAG-TAAAAGGGT----ATACTAGATTTGT..............................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------A............................................................................................................................................................................	17	16	0.13	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................ATACTAGATTTGTTGAA-------AAGT...............................................................................................................................	21	17	0.12	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCC....................................................................................................	24	18	0.11	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................TTATACCCCTTACTCGT------AGAG-TAAAC...................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGAG-TAAAAGGGT----ATACTAGATTT................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................AG-TAAAAGGGT----ATACTAGATTTGT..............................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TACTCGT------AGAG-TAAAAGGGT----ATACTAG....................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGA.............................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGT........................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGT........................................	23	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACTCGT------AGAG-TAAAAGG.................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TAGAAGGAAGCGTTT......................................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAA............................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTT......................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................GT------AGAG-TAAAAGGGT----ATACTAGA...................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TACTCGT------AGAG-TAAAAGGGT----ATA........................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-TA......................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCA......................................	18	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATG.........................................	18	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGA...................................................................	19	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................A-------AAGTATGTAACAGGTAGAAG...............................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TACCCCTTACTCGT------AGAG-TAAAAGGC................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGT..............................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................................................................................................................................................TATACCCCTTACTCGT------AGAG-T.......................................................................................................................................................................	21	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTTGAA-------AAGTATGTAACAGGTAGAAGGA.............................................................................................................	28	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AGGTAGAAGGAAGCGTTTCCGACCATA.............................................................................................	27	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCGA..................................................................................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGAA-------AAGTATGTAACAGGTAGAAGGAAGC..........................................................................................................	29	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGAA-------AAGTATGTAACAGGTAGAAGGAAG...........................................................................................................	28	12	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGTAGAAGGA.............................................................................................................	27	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTACTCGT------AGAG-TAAA....................................................................................................................................................................	17	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTACTCGT------AGAG-TA......................................................................................................................................................................	15	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTTGAA-------AAGTATGTAACAGGTAGAAG...............................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................T----ATACTAGATTTGTTGAA-------AAGTA..............................................................................................................................	23	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GGTAGAAGGAAGCGTTTCCGAC.................................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGTAGAAG...............................................................................................................	25	16	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AAAGGGT----ATACTAGATTTGT..............................................................................................................................................	20	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTTCCGT..................................................................................................	26	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAA-------AAGTATGTAACAGGTAGAAGG..............................................................................................................	24	17	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATT.................................................................	18	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................T------AGAG-TAAAAGGGT----ATACTAGATTTT...............................................................................................................................................	26	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGAAGCGTTTC.....................................................................................................	26	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGA........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACCATATAAA.........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGGAAGCGTTA......................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGT..........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGAG-TAAAAGGGT----ATACTAGATT.................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGT........................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGC........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TTCCGACCATATAAAGT.......................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GTAACAGGTAGAAGGAAGCGTTT......................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCCGACCATATAAAGTATATATATTCT............................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GT------AGAG-TAAAAGGGT----ATACTAGATT.................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGAG............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTTGAA-------AAGTATGTAACAGGTAGA.................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ACAGGTAGAAGGAAGCGTTTC.....................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GTAGAAGGAAGCGTTTCCGACC................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCA...........................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATG.........................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGTA...................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTA......................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTTC......................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TTTCCGACCATATAAAGTATATATA................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGT........................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCC............................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AACAGGTAGAAGGAAGCGTTTCC....................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................A-------AAGTATGTAACAGGTAGAAGG..............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATGT........................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGG........................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGT........................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGGAAGC..........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CGT------AGAG-TAAAAGGGT----ATACTAGATT.................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GTAACAGGTAGAAGGAAGCGTT.......................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AACAGGTAGAAGGAAGCGT........................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAA................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................T----ATACTAGATTTGTTGAA-------...................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TTCCGACCATATAAAG........................................................................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGTATGTAACAGGTAGAAGGAAGC..........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAA............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT..........................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGCGTC.......................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCAT..........................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................A-------AAGTATGTAACAGGTAGAAGGA.............................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGT........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATG.........................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGTATGTAACAGGTAGAAGGAAGCGT........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................TACTCGT------AGAG-TAAA....................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGT........................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGTC.......................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGGTAGAA................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGTT.............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGT........................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGTAGAAGGC.............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGGAAGCGTTTCA....................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

dm3

CAGTA------TTTTTAAA----ATTA------TTTAAT---------GT----ACTTTACAAATATTTTCTAG--------------------------------------------------------------------------------------------------TGTGTACT--------------------------------------ACATAAATTTTATACCCGTTACTCGT------AGAG-TAAAAGGAT----ATACTAGATTCGTTGAA-------AAGTATATAACAGGCGTAAGGAAACGTTTCCGACTCTATAAAGTATATATATTCTTGATTAGGATCAATAGCCTAATCGATCTAGCCATGTCCGTCT--------------------GTTCGTA----TGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATATAACAGGCG...................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TAATCGATCTAGCCATGTCCGTCT--------------------G.............	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCG.....................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TACTAGATTCGTTGAA-------AAGT...............................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TACCCGTTACTCGT------AGAG-TA......................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTTTATACCCGTTACTCGT------AGAG-TA......................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TATACCCGTTACTCGT------AGAG-TAAAAGG.................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................ATACCCGTTACTCGT------AGAG-........................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

GGTTT-CGATAATCG--AAA---AATT------TGAAAT------------TCGCG------AAATTTG--------------------------------AAGAGTCACCTTACTTTTTGAAC-----------------------------------------------------ACA------------------------------CC-TCGTACATTTATTTTTATACCCGTTACTAGT------GGAG-TAAGAGGGT----ATACTAGATTCATTGA--------AAGTATGTAACAGCTAGAAGGAAGCCTTTCCGACCCTATAAAGTATAAATATTCTTGATCAGGATCAATAGCGTAGTCGATTAAGCCATGTCCGTCTGTCCG------------TCTGTCCGTA----TGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATT----------TCTAAG----AATATCAACAT-AAATAG---TT---------------------------------------T---------ATTTCTATAAATTT------------------------------------------ATTC---------------------------------------------TTACAATAAA--TA--TATTCTTCTTTTTATACCCGTTACTCGT------ACAG-TAAAAGAGT----ATACTAGATTCGTCGGA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCTCATAAAGTATATATGTTTTTGATCAGAATCACTAGCTGAGTCGATCTAGCCATAGCCGTCTGTCTGTCTGT------GACTGTCCGTA----TGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATTA---------CTATT----AATA------TGTAATAT---TT-------AC--------------------------------------TCAGCTA-ATAAATCACT------------CACACCTTTAATGTATTTA--------------------------------------------------------------------------AGTGCTAATAGTTATACCCGTTACTCGT------AGAG-TAAAAAGGT----ATATTAGATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCTGTCTGTCC----GTCTGTCCGTCTGTATGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAAAA-------TGTTAACAAA-AAGA------AAAGGTAC---TT----TAATT------AAATATTA--------------------------------A--------------------------------------T-------------------------------GGAAAACTCCA--TTCAAATTCAGAACA----------AA-T--TAGTTTTATTTTTATACCCT-----TGC------A-------GAGGGT----ATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCT----GTCCGTCCGTC----TGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCGA----TTTTCTTGAA----AATA------GTAAAAAC---TT----TTT--------------------------------A---------ATTTGTGTATATCT------------------------------------------AT--------------------ATGCACA------------------------------GC-T--TATACTTATTTTTATACCCGTTACTCGT------AGAG-TAAAAGGGT----ATATTGTATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCTTCT--------GTCTGTCCGTA----TGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTTAA----TATTGCTTAT----AAAA------TATTGTGCTTATTAAAA----ATTTTACAGATATCTTCTAAAAAATAGCTTC--------------------------------------------------------------------------------------AGGTAAACT--------------------------------------GAATCGTTTTTATACCCT-----TGC------AGAG-CAAAAGGGT----ATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACCATCTGAATCGAAATATGTATGTACGTCTGTCCGTCTGTCC----GTCTGTCCGTC----TGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATT----------GCAAACA---AATA------TGAAATGTATCCTGAAA----CATTAAGAAATATATTATAAC------------------------------------------------------------------------------------------------------A----------------------------------TA--TAACATTCTTATTATACCCT-----TG---------------CAGGGT----ATTATAATTTCAGTCAG-------AAGTTTGAAACGCAGTGAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCC----GTCTGTCTGTT----TCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGTAA---ATACTTTTCACAA----GA------TCAAATAA---T---CG----TTTTC--AAAAAT-G-------------TTCAAT----------------------------------------------CGTT--TGAGT----------------------------ATGAATT------------------------------GC-T--GATATACATTTTTATACCCT-----TGC------A-------GAGGGT----ATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCCCCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCC----GTCTGTCCGTC----TGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................................................................GATATGAGCATGTCCGTCTGT................................	21	20	0.25	5	0	0	0	0	5	0
...........................................................................................................................................................................................................................................................................................................CAACGCAGTGAAGGAGACATCTC.....................................................................................................	23	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AATTTTGGTCAA-------AAGTGTGCAACGCA.....................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................TTATAATTTTGGTCAA-------AAGTGT.............................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GATATGAGCATGTCCGTCTG.................................	20	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATCCCCTC............................................................	26	20	0.05	1	1	0	0	0	0	0

droBip1

ATA--------TTTTTAACA---ATTA------TTTTAT---------AT----ATTTTTTAAACTAGTACTAG----------------------------------------------------------------------------------------------TACCAGTGCACTGCA--CTATGGTC-------------------CA--GAACCCGTTTTTTATACCCT-----TGC------A-------GAGGGT----ATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCC----GTCTGTCCGTC----TGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

GACAA-------CGCTGAAA---ATCT------T----TAT---TT-----TCCCC-----AAATTAAAG-TAAGAAA---------------TAGGCTA-AG------------------AGA-----------------------------------------------------ACCCCA--A-AT-------------------AG--TG--AGGCCTTTTTTTTATACCCGATACTCAA----AATGAG-TATTGGGGT----ATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATGTATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCC----GTCTGTCCGTC----TGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGC...........................................................	24	20	2.60	52	0	52	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGTA..........................................................................................................................	23	20	1.40	28	0	28	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGC.............................................	20	20	0.80	16	0	16	0	0	0	0	0	0	0	0
...........................................................................AAA---------------TAGGCTA-AG------------------AGA-----------------------------------------------------ACCCC.................................................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................CCCC-----AAATTAAAG-TAAGAAA---------------TAGGC.....................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGT.............................................................................................................................	20	20	0.30	6	0	0	0	0	0	0	6	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG.......................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCCGTCC----..................	19	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTC...................................	19	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGTATGTATATTCTTGATCA......................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCCGAG.......................................................	28	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCATGTCTG.....................................	21	20	0.15	3	0	0	0	0	0	2	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAGTCGAT..................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCCATAAAG........................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTC.....................................................	24	20	0.10	2	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................................................TACTCAA----AATGAG-TATTGG..................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCCGTCC----GTC...............	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGGGGT----ATATTAGATTTGTGG............................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TGTATATTCTTGATCAGCATC.................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTG............................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCTGTCTGTCCGTCC..........................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTCC..........................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCCGAC.................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTCCGTCC----GTC...............	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GATGTGTGTAACGTCCAGAAGGAATCGT........................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................AA----AATGAG-TATTGGGGT----ATATTAGA...................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GTATATTCTTGATCAGCATCA................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTCCGTCC----GTCTG.............	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

GCATA--GATATTAATA----------------C-ATATA-----T--AC----AT-------------------------------------------ATGTACATCT------------------------------------------AACCCTGTTGGACGCAAT-------AACTACA--C--------------A-----------TA--T-AACTCATTTTTATACCCGATACTCAA----AATGAG-TATTGGGGT----ATATTAGATTTGTGGTAAAAGTGTATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCC----GTCTGTCCGTC----TGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTCTG.................................	21	20	1.15	23	0	23	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGA........................................................	21	20	0.15	3	0	0	0	3	0	0
........................................................................................................................................................................................................................................................................................TGGTAAAAGTGTATGTGTG............................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................T-------AACTACA--C--------------A-----------TA--T-AACTCATTT....................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGTATGTGT.............................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCATGTCTGTCTGTCCGTC...........................	24	20	0.05	1	1	0	0	0	0	0

droWil2

TTG-----GTATTGGTATT----GATA------TGAGATAT---TT--GGATCGC------AGATAATA--------------------------------G------------------------------------------------------------------TAACTGCGTACT---CATTACCG--------------------------TTCGTTGTTTTTATACCATACACCCAT------AGGG-TGAAATGGT----ATATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGAATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCGGTCCGTCCGTCCGTCTGTCCGTA----TGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
TTG-----GTATTGGTATT----GATA------TGAGATAT---T..........................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.80	16	0	7	0	9	0
....................................................................................................................................................................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAGCCAT..........................................	25	20	0.80	16	0	0	0	16	0
TTG-----GTATTGGTATT----GATA------TGAGATAT---...........................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.65	13	0	2	0	11	0
....................................................................................................................................................................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAGCCA...........................................	24	20	0.55	11	0	0	0	11	0
................ATT----GATA------TGAGATAT---TT--GGATCGC------AG........................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TGTCGGTCCGTCCGTCCGTCTGTCCG.........	26	2	0.50	1	0	1	0	0	0
TTG-----GTATTGGTATT----GATA------TGAGATA...............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	0	0	7	0
.................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTGTCG..............................	24	7	0.14	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTCC....................................................................................................	26	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................AAA-------ATGTATGTAACAGGCAGAAGGAA............................................................................................................	26	20	0.10	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCATC.......................................................................................................	22	20	0.10	2	0	2	0	0	0
.........TATTGGTATT----GATA------TGAGATAT---TT--GGA....................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................GAATCAACAACCGAGTCGAT..................................................	20	12	0.08	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TCAGAATCAACAACCGAG.......................................................	18	14	0.07	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGATCAGAATCAACAACCGA........................................................	20	15	0.07	1	0	1	0	0	0
TTG-----GTATTGGTATT----GATA------TGAG..................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................TTTTTATACCATACACCCAT------.............................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
............TGGTATT----GATA------TGAGATAT---TT--GGA....................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........TATTGGTATT----GATA------TGAGATAT---TT--.......................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........TTGGTATT----GATA------TGAGATAT---TT--GG.....................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........TATTGGTATT----GATA------TGAGATAT---TT--G......................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.................................................GATCGC------AGATAATA--------------------------------G------------------------------------------------------------------TAACTG.........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................ACAACCGAGTCGATCTAGCCATGTC.......................................	25	20	0.05	1	0	0	0	1	0
...........TTGGTATT----GATA------TGAGATAT---TT--GGA....................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.TG-----GTATTGGTATT----GATA------TGAGATAT---...........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................TGGT----ATATTAAAGTCGCCAAA-------ATGTA..............................................................................................................................	26	20	0.05	1	0	1	0	0	0
............TGGTATT----GATA------TGAGATAT---TT--GG.....................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................ATTAAAGTCGCCAAA-------ATG................................................................................................................................	18	20	0.05	1	0	1	0	0	0

droVir3

GAT-------ATTTCTAACGAGTCTTA------TAAAACAT---AT-------------------------------------TCTATTATAC-----------------------------------------GTTT--TGATTCAGAATTTCT---------------------------------------------TTAAAAT----------AAATATTTTTTTTAACCCATTAAAAA-------TGGG-TATAAGGGTAAGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATACATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCC---CGTCCGTATGTA----TGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCATC.......................................................................................................	26	20	2.25	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGG..............................................................................................................	26	20	2.25	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGAA............................................................................................................	28	20	1.85	37	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAA................................................................................................................	24	20	1.40	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGA.................................................................................................................	23	20	1.20	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG.......................................................	25	20	1.05	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGGGTAAGTATATTGTATTTGTGCAAAA........................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................T-------------------------------------TCTATTATAC-----------------------------------------GTTT--TGATTCAGAATT...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAG..................................................................................................................	22	20	0.70	14	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGG..............................................................................................................	24	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAG...............................................................................................................	25	20	0.35	7	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCA.........................................................................................................	24	20	0.30	6	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAG...........................................................................................................	22	20	0.25	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACATTCTTGATCAGCATCAATAGCC..........................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TACATTCTTGATCAGCATCAATAGCC..........................................................	26	19	0.16	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTAAAAA-------TGGG-TATAAGGGTA..............................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCGATC.................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTAGCCATGT........................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATG.........................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TACATTCTTGATCAGCATCAATAGCCGA........................................................	28	18	0.11	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ATTAAAAA-------TGGG-TATAAGGGT...............................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCTGTCCGTCC---...................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGAC.................................................................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTAAAAA-------TGGG-TATAAGG.................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AAAGTATATACATTCTTGATCAGCA...................................................................	25	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACATTCTTGATCAGCATCAATAG............................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC....................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAGCA.........................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AAATGTATGTAACAGGCAGAAGGAAGC..........................................................................................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................AATCCAAATGTATGTAACAGG.....................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGG..............................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAA............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACATTCTTGATCAGCATCAATAGCCG.........................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCATCTCCG...................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATATA..................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAGC..........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAG...............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTCCGACCC...............................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GCATCTCCGACCCCATAAAGT.......................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TACATTCTTGATCAGCATCAATAG............................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATAAAGTATATACATTCTTGATCAGC....................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCTGTC...............................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAAAGTATATACATTCTTGATCAGCA...................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TGTGCAAAATCCAAATGTATGTAACAG......................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAA............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATCTAGCCA...........................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CCATTAAAAA-------TGGG-TATAAGG.................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................ATCCAAATGTATGTAACAGGCAGA.................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGCCGAGTC.....................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCAT........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACATTCTTGATCAGCATCAATAGCCGA........................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATCTAGCCA...........................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGC...........................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CATTCTTGATCAGCATCAATAGCCG.........................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACATTCTTGATCAGCATCAATAGC...........................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCGA...................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCATCT......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGA.................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGAT..................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCATCTCCGACC................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCT..............................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTCCG...................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATAAAGTATATACATTCTTGATCAGCA...................................................................	27	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCTGTC...........................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATCTCCGACCCCATAAAGTATA....................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGTCG....................................................	27	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGGA.............................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAGTCG....................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCTGTCC..........................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAAAGTATATACATTCTTGATCAGC....................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCA.........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGACCCC..............................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTC.......................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATT----------ATTAAG----CATA------AGATATAA---TT----TTCGCT------TTATCTC--------------------------------ATAAATTGAT--CAAT--------------------------------------------------------TTCAACT------------------------------A-TA--TATATTTCTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGT----ATAATGGTTTTGT-GAA-------AAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGATGACGAGCTGAGTCGATATAGCCCTGTCCGTCCCTCCGTCCGTCC----GTCCGTCCGTA----TGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................................................CAGGATGACGAGCTGAGTCGAT..................................................	22	19	0.11	2	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................ATCAGGATGACGAGCTGAGTCGAT..................................................	24	19	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGGATGACGAGCTGA........................................................	29	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CCGTCCCTCCGTCCGTCC----GTC...............	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATGACGAGC...........................................................	21	20	0.05	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................T----ATAATGGTTTTGT-GAA-------AAGT...............................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATGACGAGC...........................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATGACGAGCC..........................................................	24	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATGACGAGCTGAGT......................................................	24	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAATCATC.......................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAA............................................................................................................	19	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................TCATCGCAGACCCCATAAA.........................................................................................	19	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAGAAGGAATCATCGCAGACCCC..............................................................................................	24	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATGACGAGCTGA........................................................	27	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATGACGAGCTGAGTC.....................................................	24	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................GCTGAGTCGATATAGCCCTGTCCGTCC..................................	27	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGGATG.................................................................	20	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................TTCTTTTTATACCCTGAACCCATTGAAA..............................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TCATCGCAGACCCCATAAAGTAT.....................................................................................	23	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................TTTCTTTTTATACCCTGAACCCA....................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAATCATCGCAGACC................................................................................................	26	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATGACGAGC...........................................................	24	20	0.05	1	0	0	0	0	0	1

droGri2

GTTTA----TGTATCTCACAA--GCTA------CGAAATAT---TT-------------------------------------TCAGCAAAGCTATTTTGAG--------------------------------CATT--T--------------------------------ATATATT---TAAA--------------------------T--TAGCCTGTTTTTTATATTTT-------G---AGATTCT-TATAAGGCT----ATATTGGAGTTTTGGAA-------AAGTACGTAACAGGCTGGAGGAAGCTTCTCCAAC-CTATAAATTATATTTATTCTTGATCAGAATAAACAGCTTAATCGATTTAGCCATGTACGTATGTTTGTCCGTCGTTCCGACCGTCTGAA----TGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_925

3R:3774244-3774394 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.7	-28.6	-28.5