ID:

dya_905

 Coordinate:

3R:1115260-1115410 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.7 -24.7 -24.6

Flybase annnotation

exon [dyak_GLEANR_8937:2]; CDS [Dyak\GE25319-cds]; intron [Dyak\GE25319-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
  1. 3L:9248327-9248346 -
  2. dya_905  3R:1115297-1115316 -
  3. 4:292240-292259 -
  4. 4:574152-574171 -
  5. v2_chrUn_4198:198-217 -
  6. v2_chrUn_2929:893-912 -
  7. v2_chrUn_6915:3424-3443 -
  8. v2_chrUn_7001:2453-2472 -
  9. v2_chrUn_7001:6459-6478 -
  10. chr2h:529182-529201 -
  11. chr2h:531377-531396 -
  12. chr2h:625550-625569 -
  13. v2_chr2L_random_030:126415-126434 -
  14. v2_chr2L_random_031:143406-143425 -
  15. v2_chr3L_random_172:16634-16653 -
  16. v2_chr3h_random_002:533027-533046 -
  17. v2_chrUh_004:158349-158368 -
  18. v2_chrUh_004:159263-159282 -
  19. v2_chrUn_233:3131-3150 -
  20. v2_chrUn_692:617-636 -
  21. 3L:17520542-17520561 +
  22. 2L:15095995-15096014 +
  23. 2L:16815054-16815073 +
  24. 2L:16938640-16938659 +
  25. 2R:922403-922422 +
  26. 2R:3445068-3445087 +
  27. X:10517235-10517254 +
  28. 3R:1458955-1458974 +
  29. 3R:6342211-6342230 +
  30. 3R:16438564-16438583 +
  31. 3R:20348290-20348309 +
  32. 4:786736-786755 +
  33. v2_chrUn_4617:917-936 +
  34. v2_chrUn_5211:660-679 +
  35. v2_chr2L_random_010:593867-593886 +
  36. v2_chr3L_random_074:11431-11450 +
  37. v2_chr3L_random_147:11007-11026 +
  38. v2_chr3L_random_310:29020-29039 +
  39. v2_chrX_random_001:121486-121505 +
  40. v2_chrUn_019:2694-2713 +
  41. 3L:23254544-23254563 +
  42. 2R:651387-651406 +
  43. 2R:1095246-1095265 +
  44. 3R:1430478-1430497 +
  45. 4:479405-479424 +
  46. v2_chrUn_4206:322603-322622 +
  47. v2_chrUn_2022:34803-34822 +
  48. v2_chrUn_2244:1216-1235 +
  49. v2_chrUn_5177:237-256 +
  50. v2_chrUn_5405:87678-87697 +
  51. v2_chrUn_6392:544-563 +
  52. v2_chrUn_6728:20759-20778 +
  53. v2_chr2h_random_004:924370-924389 +
  54. v2_chr2L_random_028:1705110-1705129 +
  55. v2_chr3L_random_018:22056-22075 +
  56. v2_chr3L_random_017:1502-1521 +
  57. v2_chrUn_003:401659-401678 +
  58. v2_chrUn_057:1566-1585 +
  59. v2_chrUn_421:1787-1806 +
  60. v2_chrUn_517:31966-31985 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATGGACAGACAGACGGACGGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAACGAATCTAGTATACCCTTTTACTCTACGAGTAACGGGTATAAATATTCCCCTTTTAAATGTATTACTTATCTGCAGACTTCAGGAAGATCCACCCACGGGTGTCTCGGGCGCGCCAACAGATAATA
**************************************************..(((((....)))))((.((((((.....)))))).))((((....))))..((((..(((((((..........((((....(((((((..((((((...)))))).)))))))...)))).........)))))..))......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V120
male body		 M056
embryo
................................................................................................................................................................................................TATCTGCAGACTTCAGGAAGATCCACC................................ 27 0 1 1.00 1 1 0 0
............................................................................................................................................................................................................TCAGGAAGATCCACCCACGGGT......................... 22 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................GACTTCAGGAAGATCCACCCACGGGTGTCT..................... 30 0 1 1.00 1 0 1 0
.......................................................................................................................................................................................................AGACTTCAGGAAGATCCACC................................ 20 0 1 1.00 1 0 1 0
.....................................................................................................................................................................................................................TCCACCCACGGGTGTCTCGGGCGCGCC........... 27 0 1 1.00 1 0 0 1
................................................................................................................................................TACTCTACGAGTAACGGGTA....................................................................................... 20 0 20 0.15 3 3 0 0
....................GACAGACGGACATGGCCAGATC................................................................................................................................................................................................................. 22 0 20 0.10 2 0 0 2
.........................ACGGACATGGCCAGATCGACTCGGC......................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 2
................................................................................................................................................................................................................GACGATCCCCCAACGGGT......................... 18 3 20 0.05 1 1 0 0

Anti-sense strand reads

ATACCTGTCTGTCTGCCTGCCTGTCTGCCTGTACCGGTCTAGCTGAGCCGATAACTAGGACTAGTTCTTATATATATGAAATATACCAGCCTTTGCGAAGGAAGACGGACAATGTATGAAAAGTTGCTTAGATCATATGGGAAAATGAGATGCTCATTGCCCATATTTATAAGGGGAAAATTTACATAATGAATAGACGTCTGAAGTCCTTCTAGGTGGGTGCCCACAGAGCCCGCGCGGTTGTCTATTAT
**************************************************..(((((....)))))((.((((((.....)))))).))((((....))))..((((..(((((((..........((((....(((((((..((((((...)))))).)))))))...)))).........)))))..))......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 GSM1528802
follicle cells		 V120
male body		 M056
embryo
 M026
head
.........................................................................................CCTTTGCGAAGGAAGACGGACAATGT........................................................................................................................................ 26 0 20 5.20 104 104 0 0 0 0
..........GTCTGCCTGCCTGTCTGCCTGTACCGGT..................................................................................................................................................................................................................... 28 0 20 1.55 31 0 31 0 0 0
............................................................................................................................................................................................................AGTCCTTCTAGGTGGGTGCCCAC........................ 23 0 1 1.00 1 1 0 0 0 0
...................................................................................TACCAGCCTTTGCGAAGGAAGACGGAC............................................................................................................................................. 27 0 20 0.45 9 9 0 0 0 0
......................................................................................................................AAAAGTTGCTTAGATCATATGGGAAA........................................................................................................... 26 0 20 0.25 5 0 0 5 0 0
................CTGCCTGTCTGCCTGTACC........................................................................................................................................................................................................................ 19 0 20 0.15 3 0 0 0 0 3
..................................................................................ATACCAGCCTTTGCGAAGGAAGACG................................................................................................................................................ 25 0 20 0.15 3 0 0 3 0 0
.............................................................................................TGCGAAGGAAGACGGACAATGTATGA.................................................................................................................................... 26 0 20 0.10 2 0 0 0 2 0
..........................................CTGAGCCGATAACTAGGACTA............................................................................................................................................................................................ 21 0 20 0.10 2 2 0 0 0 0
...................................................................................TACCAGCCTTTGCGAAGGAAGACGGA.............................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0
...................CCTGTCTGCCTGTACCGGTCTAG................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
........................CTGCCTGTACCGGTCTAGCTGAGCCG......................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0
.............TGCCTGCCTGTCTGCCTGTACCGGTC.................................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0
............CTGCCTGCCTGTCTGCCTGTACC........................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
............................CTGTACCGGTCTAGCTGAGC........................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0
.............................TGTACCGGTCTAGCTGAGCCGATA...................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
........................................................................................GCCTTTGCGAAGGAAGACGGACAATGT........................................................................................................................................ 27 0 20 0.05 1 0 0 1 0 0
..............................GTACCGGTCTAGCTGAGCCGATAA..................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3R:1115210-1115460 - dya_905 TAT------------GGACAGACAGACGGACGGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATA----TATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTTTA-CTC--T----ACGAGTAACGGGTATAAATAT----------TCCCCTTT----------------------------------------------------------------------TA----AATGTATT---ACTTATC----TG--CAGACT-TCAGG-------------------AAGATC-------CAC------------------------------------------------CCACGGGT---GTCTC-----------GGGCGCGC--CAACAGATAATA--
droEre2 scaffold_4784:17309794-17310051 - TAC------------GGA----CAGACAAACGGACAAACGGACATGCCCATATCGACTCGGCTATTGATCCTGATCAAGAATATACATATATATTTTTAATGGTCGGAAACGTTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTCTAGCATTTTA-CTC--T----ACGAGTAACGGGTATAATTACAAAAAAAAT-TCA-----A------------TTTAA----------------------------------------------------AA---------------------AATGT--------------------------------------------------------------TATAA---------ATTTAAATGCAGAGAGAATTC--CCGCAGAAACATTTAG-----------AGGTACGC--CACATCAAAATG--
droSec2 scaffold_11:1683818-1684001 + TAC----------------------------GGACAGAAGGGCATAGCTAGATCGACTCGGCTATTGATCCTGATCAAGAATA----TATATACTTTATATAGTCGGAAACGCTTCCTTCTGCCAGTTACATACT-------TTTTAACGAATCTAGTATACCCTTATA-CTC--T----ACGAGTAGCGGGTATAATTAG----------TCTCTC----------------------------------------------------------------------ATAC----ACTGTATT---AATCATT----------------------------------------------------------------------------------------------------------------------------------------------------GGCA--
droSim2 3r:293677-293874 + TAT------------GGACATTCAAACGGACGTTCAGACTTACAGGGTCAGATCGACTCGGCTTTTGATCCTGATCAAGAATA----TATATACTTTATATGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTCGACG-ATCTAGTATACCCTTTTA-ACC--T----ATGAGTAACGGGTATTAAAAT----------CGAGCGGTAA--------------AATATATT---------------------------------------TATTTAA-----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------TG--
dm3 chr2L:22127710-22127907 - TAC------------GGACAGACGGACAGTCGGAAAGTCAGATATGGCCAGATCGACTCGACTATTGATCCTGATCAAGAATA----TATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACATAC----TTACAACGAATCTTGCA---CCTTTTA-CTC--T----ACGATTAATGGGTATAATAAC----------TCT-----T---------------------------------T---------------------------------AG-------ATGTTTGAATAATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------GGA--
droEug1 scf7180000408192:15308-15549 - TACG----G----ACGGACGGACGGACGGACGGACAGACGGACATGGCTCAATCGACTTCGCTATTGATCCTGATCAAGAATA----TATATACTTTATAGGGTCGCAAAAGCTTCCTTCTATCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTTTA-CTC--T----ACGAGTAACGGGTATAAACAT----------CCA-----AA--------------AAAATGTT---------------------------------------CATTTATTTATGCACAAAGTT---ACCT------------------------------------------------------------------------------------------------------------ATCTGG---GTCAT-----------AGGTGCA------CAGACAAGGGT
droBia1 scf7180000301632:6610-6845 - TAG------------AAACAGACAGACAGACGGACACACGGACATGGCCAGATCGACTCGGCTAGTGATCCTAATCAAGAATA----TATATACTTTATGGGGTCGAAAACGCTTCTTTCTACCCGTTACATACT-------TTCCGACGAATCCAGTATACCCTTTTG-TTC--T----ACGACTAACGGTTATAAAAAA------AACTCGA-------CCGCCTTGCCTTGTAA-----------------------------------------------------------------T---ATATGTA----TG--TAAATT-TCAAA-------------------AGGATG-------GGTG---CA---------------------------------------------CGAGT---TT----------------------------------TT--
droTak1 scf7180000413297:695-924 - TACA----GACAGACAGACGGACAGACAGACGGACAGATGGACATGGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAATA----TATATAGTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTGCACGAATCTAATATACCCTTTTA-CTC--T----ACAAGTAACGGGTATAAAAAT----------GACCCTT-----------------------------------TGAGTCGTGCCAT----------------------------------TT---------------------------CAATAACTTAAGATCCACCTA---------------------------------------------------------------------A--------------------------------------AAATATC--
droEle1 scf7180000491199:7988-8217 - GAC------------GGACGGACAGACGGACGGGCAGACGGACATGGCTAGATCGACTCTACGAGTGATTCTGAGCAAGAATA----TATATACTTTGTAGGGTCGGAAACGTCTCCTTCACTGCGTTCCAAACT-------TCTGACTGAAATTATAATACCCT-------C--T----GCA-----AGGGTATAAAAAT----------TTT--------------------------------------------------------------------AATTTACTT---------------------------GCGTATAGGTTTAATAACATTGAAGCAATG-A-------TGATTTGCAG-------------------------------------------------------------------------------CTCAA--TAACAAATAATA--
droRho1 scf7180000776848:752-1006 - TACG----G----ACAGACAGACAGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCCTGAACAAGAATA----TATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACT-------TTTGCACGAATACAATATACCCTTTTA-CTC--T----ACGAGTAACGGGTATAAACAG----------TAAAGGCCAG--------------AAAATAGT---------------------ACTTAAAGGTATTGATCC------------------------------G-------------------G-------------------AAGGAA-------CAT------------------------------------------------CAGCTGAA---GTTAC-----------AGGCGCAC--TGAAGGAGAAAG--
droFic1 scf7180000454055:1891286-1891497 - GAC------------GGACAGACGGACAGACGGACAGACGTACATACATATTTCGATTCTGCTCGTGATGCTGATCAAGAATA----TATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGCAAACT-------TCTGACTGAAATTATAATACCCTTTTG-CTC--T----GCA-----AGGGTATAAATAT----------AAATATT-------------------------------------------------------------------T---TA---------------------CTTGT--------------------------------------------------------------AGTTC---------CTC------------------------TG----------------------AGCAAACAGCAACAAACTACA--
droKik1 scf7180000301922:11560-11796 - GAC------------GGACGGACGGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATACTGATCAAGAATA----TATATACTTTATAGGGTCGGAAAGGTCTCCTTCACTGCGTTGCAAACT-------TCTGACTGAAATTATAATACCCT---------------GCA-----AGGGTATAAAAAT----------CGACCTTT-------CTG---------------------------GTC------------------------------------------AA---ACTTATA----GA--CAAAAT-AAAAG-------------------GAAATA-------TAT-----ATAAGTTGTATAT---------------------------------------------T-----------ATACATAC--CATTAAATAATT--
droAna3 scaffold_13082:1429201-1429443 + TAG------------AAACCGACAGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATA----TATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACT-------TTTGACCAAAATTATAATACCCT-------C--T----GCA-----AGGGTATAACAAA----------TT---------------------------ATT---------------------------------------GTTTTATTAATAGAATTAATT---AGACATC----TG--CA-------------------------TGAAAAAATTCATTCCCAGCACCACA---------------------------------------------GTAAT---G------------------T---A--CAACAGATAATT--
droBip1 scf7180000393245:31572-31818 - -AC------------AGACAGACGGACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATA----TATATACTTTATAGGGTCGGAGATGTTTCCTTCACTGCGTTGCACACT-------TTTGGACAAAATTATAATACCCT-------C--T----GCA-----AGGGTATAAAAAC----------GCACGT-----------------------------ATTTTTCTAGATCGAAGTATTTCTAAGTAAAATTCC------------------------------A----AA--AA-----------------------------AAACGC-------CAA------------------------------------------------TTACGGTT---GTATT-----------CAAAAAGA--AAACAGATAAT---
dp5 4_group1:606525-606772 - GAC------------GGACAGACGGACGGACGGACAGACAGACATTTCTCAATCGACTCGGCTATTGATGCTGATCAAGAATA----TATATACTTTATGGGGTCGGAAATGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATACCCCAATA-CTCATT----TTGAGTATCGGGTATAAAAAA------TAGGTAA-------ACAAATTTAA-----ATA-------------------------------------------CATTAATT---------------------TG----TG--TAAAGT-TAAAA-------------------ATAAGC-------AGCT---CA---------------------------------------------AGGCT---TT------------------------------ATAGGG--
droPer2 scaffold_52:467375-467623 + GAC------------GGACAGACGGACGGACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATA----TATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATACACTTTTACCACAAATCTAATATACCCCAATA-CTCATT----TTGAGTATCGGGTATAAACAC----------ACACAG----ACACGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGATACACACTTATAAACAGAA--AATACACGCACTGGT---A---------------GGGCACA------CAG---ACA--
droWil2 scf2_1100000004963:352883-353135 - TACG----G----ACGGACGGACGGACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTTTTGATCCTGATCAAGAATA----TATATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACA-------TTTTGGCGACTTTAATATACCATTTCA-CCC--T----ATGGGTGTATGGTATAAAAAT----------TAA----------------------AAACAGTTGTT-----------------------------------TT-------------TGTATT---CTTTTCC----GA--TATATT-TCG-G------------------------C-------CAC------------------------------------------------TCATCGGT---GTCGT-----------CTTCAAGG--CAACTATAAACA--
droVir3 scaffold_12970:1592468-1592726 - TACA----T----ACGGACGGACGGACGGACAGACAGACGGACATGGCTAAATCGACTCAGCTATTGATGCTGATCAAGAATA--------TACTTTATGGGATCGGAGATGCTTCCTTCTGCCTGTTACATACATTTGGATTTTGCACAAATACAATATACCCTTATA-CCCATTTTTAATGGGTTCAGGGTATAAAAGT----------G---------------------------------------------------------------------------------------TATT---AAACATT---TTTCATACATCTTGAGTAACCGAGGACCCAGCCA---------------------------------------------------------------------GG-CT-----TGGCGAAATATCACCT--A---------AGTCAACT--
droMoj3 scaffold_6500:31919881-31920148 - TACATACGGACAGACGGACGGACGGACGGACAGACAGACGGACAGGGCCAAATCGACTCAGCTCGTCGCCCTGATCAAGAATA----TATATACTTTGTGGGGTCGC-CACGCCTCCTTCTGCCTGTTACATACA-------TTTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAATAAT------AATATTA-------TCAACTTAAT-----GT---------------------------------------------------------------TT---ATACATA----TG--TATATT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------CTTCGCGC--CATCTAGTAGTA--
droGri2 scaffold_15110:24412744-24412950 + CGT------------GTTCAGACAGACGGACGGACAGACGGACATGGCTATATCGACTCGGCTGTTGACCCTGATCAAGAATATACATATATACTTTATGGGGTTGGAGATGCTTCCTTCTGCCTGTTACATACA-------TTATCACAAAACCATTATACCCTTTGA-CCCATTTTTAATGGATTCTGGGTATAAAAAT----------GCG-----A------------TATTA----------------------------------------------------TA---------------------TATGT--------------------------------------------------------------ATTAT---------CTT-------------------------------------------------------------------TC--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TAT------------GGACAGACAGACGGACGGACAGACGGACATGGCCAGATCGACTCGGCTATTGATCCTGATCAAGAATA----TATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTTTA-CTC--T----ACGAGTAACGGGTATAAATAT----------TCCCCTTT----------------------------------------------------------------------TA----AATGTATT---ACTTATC----TG--CAGACT-TCAGG-------------------AAGATC-------CAC------------------------------------------------CCACGGGT---GTCTC-----------GGGCGCGC--CAACAGATAATA--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................TATC----TG--CAGACT-TCAGG-------------------AAGATC-------CAC------------------------------------------------C..................................................2711.00101000000000
........................................................................................................................................................................................................................................................................................................................................TCAGG-------------------AAGATC-------CAC------------------------------------------------CCACGGGT---........................................2211.00101000000000
...................................................................................................................................................................................................................................................................................................................................GACT-TCAGG-------------------AAGATC-------CAC------------------------------------------------CCACGGGT---GTCT....................................3011.00100000010000
..................................................................................................................................................................................................................................................................................................................................AGACT-TCAGG-------------------AAGATC-------CAC------------------------------------------------C..................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................TC-------CAC------------------------------------------------CCACGGGT---GTCTC-----------GGGCGCGC--C.............2711.00100100000000
.......................................................................................................................................................................TA-CTC--T----ACGAGTAACGGGTA.................................................................................................................................................................................................................................................................................20200.15303000000000
................................GACAGACGGACATGGCCAGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200200000000
.....................................ACGGACATGGCCAGATCGACTCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200200000000
droEre2
TAC------------GGA----CAGACAAACGGACAAACGGACATGCCCATATCGACTCGGCTATTGATCCTGATCAAGAATATACATATATATTTTTAATGGTCGGAAACGTTTCCTTCTGCCTGTTACATACT-------TTTCAACGAATCTAGTCTAGCATTTTA-CTC--T----ACGAGTAACGGGTATAATTACAAAAAAAAT-TCA-----A------------TTTAA----------------------------------------------------AA---------------------AATGT--------------------------------------------------------------TATAA---------ATTTAAATGCAGAGAGAATTC--CCGCAGAAACATTTAG-----------AGGTACGC--CACATCAAAATG--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droSec2
TAC----------------------------GGACAGAAGGGCATAGCTAGATCGACTCGGCTATTGATCCTGATCAAGAATA----TATATACTTTATATAGTCGGAAACGCTTCCTTCTGCCAGTTACATACT-------TTTTAACGAATCTAGTATACCCTTATA-CTC--T----ACGAGTAGCGGGTATAATTAG----------TCTCTC----------------------------------------------------------------------ATAC----ACTGTATT---AATCATT----------------------------------------------------------------------------------------------------------------------------------------------------GGCA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................TCGACTCGGCTATTGATCCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................24201.903838000
....................................................TCGACTCGGCTATTGATCCTGATCAAGA...................................................................................................................................................................................................................................................................................................................................................................................................28200.4088000
...........................................ATAGCTAGATCGACTCGGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510001
................................................TAGATCGACTCGGCTATTGATCCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................26200.2042020
................................................................................ATA----TATATACTTTATATAGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................24200.1533000
................................................TAGATCGACTCGGCTATTGATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................25200.1022000
....................................................TCGACTCGGCTATTGATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................21200.1020020
..............................................................................................................................................TTTTAACGAATCTAGTATACCCTT.............................................................................................................................................................................................................................................................................................................24120.0811000
...............................................CTAGATCGACTCGGCTATTGATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000
.....................................................CGACTCGGCTATTGATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000
.........................................................................................TATACTTTATATAGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................25200.0510010
.................................................AGATCGACTCGGCTATTGATC.............................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000
..........................................................CGGCTATTGATCCTGATCAAG....................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
....................................................TCGACTCGGCTATTGATCCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
................................................................................ATA----TATATACTTTATATAGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................29200.0511000
....................................................TCGACTCGGCTATTGATCCTGATCAA.....................................................................................................................................................................................................................................................................................................................................................................................................26200.0510010
................................................................................ATA----TATATACTTTATATAGTCGGAAAC....................................................................................................................................................................................................................................................................................................................................................................27200.0510010
....................................................TCGACTCGGCTATTGATCCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100
................................................................................ATA----TATATACTTTATATAGTCGGAA......................................................................................................................................................................................................................................................................................................................................................................25200.0511000
.....................................................CGACTCGGCTATTGATCCTGATCAAGA...................................................................................................................................................................................................................................................................................................................................................................................................27200.0511000
........................................................CTCGGCTATTGATCCTGATCAAGAAT.................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000
....................................................TCGACTCGGCTATTGATCC............................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
droSim2
TAT------------GGACATTCAAACGGACGTTCAGACTTACAGGGTCAGATCGACTCGGCTTTTGATCCTGATCAAGAATA----TATATACTTTATATGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTCGACG-ATCTAGTATACCCTTTTA-ACC--T----ATGAGTAACGGGTATTAAAAT----------CGAGCGGTAA--------------AATATATT---------------------------------------TATTTAA-----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------TG--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................GAATA----TATATACTTTATATGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................26209.1018200000000000011864000
................................................................................ATA----TATATACTTTATATGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................24206.7513500000005101110720000
................................................................................ATA----TATATACTTTATATGGTCGGAA......................................................................................................................................................................................................................................................................................................................................................................25203.6573000000700210630000
................................................................................ATA----TATATACTTTATATGGTCGGAAA.....................................................................................................................................................................................................................................................................................................................................................................26203.50700000002032004221000
..............................................................................GAATA----TATATACTTTATATGGTCGGAA......................................................................................................................................................................................................................................................................................................................................................................27203.15630000001602003618000
.....................................................................................................................................................................................TGAGTAACGGGTATTAAAAT----------CGAGCGGTA.......................................................................................................................................................................................................................................................2913.00300000000300000000
........................................................................................................................................................................................................T----------CGAGCGGTAA--------------AATATATT---------------------------------------TATTTAA-----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------....2713.00300000010200000000
..............................................................................................................................................TTTCGACG-ATCTAGTATACCCTTTTA-.........................................................................................................................................................................................................................................................................................................2612.00200000020000000000
...........................................................................................TACTTTATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................23202.00400000002101060030000
..............................................................................................................................................TTTCGACG-ATCTAGTATACCCTTTT...........................................................................................................................................................................................................................................................................................................2512.00200000000200000000
................................................................................................................................ACATACT-------TTTCGACG-ATCTAGT.....................................................................................................................................................................................................................................................................................................................2212.00200000010100000000
........................................................................................................................TACCTGTTACATACT-------TTTCGACG-A...........................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
......................................................................................................................................................................................................AAT----------CGAGCGGTAA--------------AATATATT---------------------------------------TAT......................................................................................................................................................................................2411.00100000000010000000
...............................................................................................................................TACATACT-------TTTCGACG-ATCTAGTA....................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
......................................................................................................................................................................................GAGTAACGGGTATTAAAAT----------CGAG............................................................................................................................................................................................................................................................2311.00100000000010000000
...............................................................................................................................................................................T----ATGAGTAACGGGTATTAAAAT----------CGA.............................................................................................................................................................................................................................................................2511.00100000010000000000
............................................................................................................................TGTTACATACT-------TTTCGACG-ATCTAGT.....................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
...............................................................................................................................................................................T----ATGAGTAACGGGTATTAAAAT----------CGAG............................................................................................................................................................................................................................................................2611.00100000000100000000
.......................AAACGGACGTTCAGACTTACAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.....................................................................................................................................................................................TGAGTAACGGGTATTAAAAT----------CGAGCGG.........................................................................................................................................................................................................................................................2711.00100000000100000000
.............................................................................................................................................................................................GGGTATTAAAAT----------CGAGCGGTAA--------------AAT.....................................................................................................................................................................................................................................2511.00100000000010000000
..............................................................................GAATA----TATATACTTTATATGGTCGG........................................................................................................................................................................................................................................................................................................................................................................25200.9519000000020330110000
..................................................................................................TATGGTCGGAAACGCTTCCTTC...........................................................................................................................................................................................................................................................................................................................................................22200.9519000000000019000000
.........................................................................................TATACTTTATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................25200.751500000004911000000
..................................................................................................TATGGTCGGAAACGCTTCCTT............................................................................................................................................................................................................................................................................................................................................................21200.6513000000000013000000
..................................................................................................................TCCTTCTACCTGTTACATACT-------.....................................................................................................................................................................................................................................................................................................................................21200.6513000000101110000000
...............................................................................................TTATATGGTCGGAAACGCTTCCTTC...........................................................................................................................................................................................................................................................................................................................................................25200.601200000002208000000
....................................................TCGACTCGGCTTTTGATCCTGATCAAGAA..................................................................................................................................................................................................................................................................................................................................................................................................2970.57400000020200000000
..................................................GATCGACTCGGCTTTTGATCCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2490.56500010000004000000
...........................................................................................TACTTTATATGGTCGGAAACGCTT................................................................................................................................................................................................................................................................................................................................................................24200.551100000040421000000
........................................................................................ATATACTTTATATGGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................25200.501000020004011011000
................................................................................ATA----TATATACTTTATATGGTCGGAAAC....................................................................................................................................................................................................................................................................................................................................................................27200.501000000000000064000
.......................................................................................TATATACTTTATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................27200.501000000063100000000
...........................................................................................TACTTTATATGGTCGGAAACGCTTC...............................................................................................................................................................................................................................................................................................................................................................25200.501000000004600000000
.....................................................................................................................TTCTACCTGTTACATACT-------TTTCGAC..............................................................................................................................................................................................................................................................................................................................2520.50100000000010000000
..............................................................................GAATA----TATATACTTTATATGGTCGGAAA.....................................................................................................................................................................................................................................................................................................................................................................28200.45900000000030060000
..................................................GATCGACTCGGCTTTTGATCCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................2590.44400000000004000000
...........................................................................................TACTTTATATGGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................22200.40800000023210000000
..............................................................................................TTTATATGGTCGGAAACGCTTCCTTC...........................................................................................................................................................................................................................................................................................................................................................26200.35700000012003100000
.................................................................................TA----TATATACTTTATATGGTCGGAA......................................................................................................................................................................................................................................................................................................................................................................24200.35700000000000034000
........................................................................................ATATACTTTATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................26200.35700000040001020000
..................................................GATCGACTCGGCTTTTGATCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2390.33300000000003000000
........................................................................................ATATACTTTATATGGTCGGAAACG...................................................................................................................................................................................................................................................................................................................................................................24200.30600000000600000000
................................................................................................TATATGGTCGGAAACGCTTCCTT............................................................................................................................................................................................................................................................................................................................................................23200.30600000000006000000
....................................................TCGACTCGGCTTTTGATCCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................24100.30300200001000000000
....................................................TCGACTCGGCTTTTGATCCTGATCAAGA...................................................................................................................................................................................................................................................................................................................................................................................................2870.29200000011000000000
................................................................................ATA----TATATACTTTATATGGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................29200.25500000032000000000
.................................................................................................................TTCCTTCTACCTGTTACATACT-------.....................................................................................................................................................................................................................................................................................................................................22200.25500000000140000000
...........................................................................................TACTTTATATGGTCGGAAACGCTTCC..............................................................................................................................................................................................................................................................................................................................................................26200.25500010013000000000
................................................................................ATA----TATATACTTTATATGGTCGG........................................................................................................................................................................................................................................................................................................................................................................23200.20400000010000030000
....................................................TCGACTCGGCTTTTGATCCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................22100.20200000020000000000
........................................................................................................CGGAAACGCTTCCTTCTACCTGTTACA................................................................................................................................................................................................................................................................................................................................................27110.18200000001010000000
.........................................................................................TATACTTTATATGGTCGGAAACGCTT................................................................................................................................................................................................................................................................................................................................................................26200.15300000030000000000
.......................................................................................TATATACTTTATATGGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................26200.15300000000000030000
...............................................................TTTGATCCTGATCAAGAATA----TATATACTT...................................................................................................................................................................................................................................................................................................................................................................................2970.14100000010000000000
..................................................GATCGACTCGGCTTTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................19150.13200000000002000000
..................................................................................................TATGGTCGGAAACGCTTCCTTCTAC........................................................................................................................................................................................................................................................................................................................................................25170.12200000000002000000
..................................................GATCGACTCGGCTTTTGATCCT...........................................................................................................................................................................................................................................................................................................................................................................................................2290.11100100000000000000
..............................................................................................TTTATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................20200.10200000000200000000
....................................................................TCCTGATCAAGAATA----TATATACTT...................................................................................................................................................................................................................................................................................................................................................................................24200.10200000002000000000
...............................................TCAGATCGACTCGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000020000000000
.......................................................................................................TCGGAAACGCTTCCTTCTACCTGTTACATA..............................................................................................................................................................................................................................................................................................................................................30100.10100000010000000000
..................................................................................A----TATATACTTTATATGGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................27200.10200000000200000000
................................................................................................TATATGGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................17200.10200000000002000000
.................................................................................TA----TATATACTTTATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................29200.10200000000000020000
.............................................................................................CTTTATATGGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................20200.10200000000002000000
................................................................................ATA----TATATACTTTATATGGTCGGAC......................................................................................................................................................................................................................................................................................................................................................................25200.10200000002000000000
.......................................................................................TATATACTTTATATGGTCGGAAACG...................................................................................................................................................................................................................................................................................................................................................................25200.10200000000000002000
........................................................CTCGGCTTTTGATCCTGATCAAGA...................................................................................................................................................................................................................................................................................................................................................................................................24100.10100000010000000000
..................................................................................A----TATATACTTTATATGGTCGGAAA.....................................................................................................................................................................................................................................................................................................................................................................24200.10200000000020000000
....................................................TCGACTCGGCTTTTGATCCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................23100.10100010000000000000
.........................................................TCGGCTTTTGATCCTGATCAAGAA..................................................................................................................................................................................................................................................................................................................................................................................................24100.10100000000010000000
..............................................................................................TTTATATGGTCGGAAACGCTTCCTTCT..........................................................................................................................................................................................................................................................................................................................................................27200.10200010001000000000
.....................................................CGACTCGGCTTTTGATCCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................22110.09100000010000000000
.......................................................................................................TCGGAAACGCTTCCTTCTACCTGTTA..................................................................................................................................................................................................................................................................................................................................................26120.08100000010000000000
.......................................................................................................TCGGAAACGCTTCCTTCTACCTGTT...................................................................................................................................................................................................................................................................................................................................................25130.08100000000100000000
.......................................................................................................TCGGAAACGCTTCCTTCTACCTGT....................................................................................................................................................................................................................................................................................................................................................24150.07100000000100000000
..................................................GATCGACTCGGCTTTTGA...............................................................................................................................................................................................................................................................................................................................................................................................................18160.06100000000001000000
..........................................................CGGCTTTTGATCCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................17180.06100000000001000000
....................................................................TCCTGATCAAGAATA----TATATACTTTAT................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000010000000
.................................................................TGATCCTGATCAAGAATA----TATATACT....................................................................................................................................................................................................................................................................................................................................................................................26200.05100010000000000000
.............................................................................AGAATA----TATATACTTTATATGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................27200.05100000001000000000
............................................................................................ACTTTATATGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
.................................................................................TA----TATATACTTTATATGGTCGGAAACGCA.................................................................................................................................................................................................................................................................................................................................................................29200.05100000000000010000
.............................................................................................CTTTATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
.........................................................................................TATACTTTATATGGTCGGAAACGC..................................................................................................................................................................................................................................................................................................................................................................24200.05100000000000010000
.......................................................................................TATATACTTTATATGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
...........................................................................................TACTTTATATGGTCGGAAA.....................................................................................................................................................................................................................................................................................................................................................................19200.05100000000100000000
................................................................................................TATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000000000
....................................................................................................TGGTCGGAAACGCTTCC..............................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
.................................................................................TA----TATATACTTTATATGGTCGGAAACG...................................................................................................................................................................................................................................................................................................................................................................27200.05100000010000000000
....................................................................TCCTGATCAAGAATA----TATATACTTTATA...............................................................................................................................................................................................................................................................................................................................................................................28200.05100000000010000000
........................................................................................ATATACTTTATATGGTCGGAAA.....................................................................................................................................................................................................................................................................................................................................................................22200.05100000000000010000
...........................................................................................TACTTTATATGGTCGGAAACGCTTCCTT............................................................................................................................................................................................................................................................................................................................................................28200.05100000000000010000
............................................................................................ACTTTATATGGTCGGAAACGCT.................................................................................................................................................................................................................................................................................................................................................................22200.05100000000001000000
...........................................................................................TACTTTATATGGTCGGAAACGCTTCCTTC...........................................................................................................................................................................................................................................................................................................................................................29200.05100000001000000000
...............................................................................AATA----TATATACTTTATATGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
.........................................................................................TATACTTTATATGGTCGGAAACGCTTC...............................................................................................................................................................................................................................................................................................................................................................27200.05100000010000000000
..............................................................TTTTGATCCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000001000000000
..............................................................................................TTTATATGGTCGGAA......................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
..............................................................................GAATA----TATATACTTTATATGG............................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000001000
...........................................................................................TACTTTATATGGTCGGAAACGCTTCCT.............................................................................................................................................................................................................................................................................................................................................................27200.05100000000010000000
.........................................................................................TATACTTTATATGGTCGGAAACG...................................................................................................................................................................................................................................................................................................................................................................23200.05100000000000010000
.................................................................................................ATATGGTCGGAAACGCTTCCT.............................................................................................................................................................................................................................................................................................................................................................21200.05100100000000000000
........................................................................................ATATACTTTATATGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................20200.05100000000001000000
................................................................TTGATCCTGATCAAGA...................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000010000000
..............................................................................GAATA----TATATACTTTATATGGTCGGAAACG...................................................................................................................................................................................................................................................................................................................................................................30200.05100000000000001000
.......................................................................................TATATACTTTATATGGTCGGAAACGCTT................................................................................................................................................................................................................................................................................................................................................................28200.05100000001000000000
........................................................................................ATATACTTTATATGGTCGGAAACGCTT................................................................................................................................................................................................................................................................................................................................................................27200.05100000000010000000
..............................................................................GAATA----TATATACTTTATATGGT...........................................................................................................................................................................................................................................................................................................................................................................22200.05100000000000010000
dm3
TAC------------GGACAGACGGACAGTCGGAAAGTCAGATATGGCCAGATCGACTCGACTATTGATCCTGATCAAGAATA----TATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACATAC----TTACAACGAATCTTGCA---CCTTTTA-CTC--T----ACGATTAATGGGTATAATAAC----------TCT-----T---------------------------------T---------------------------------AG-------ATGTTTGAATAATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------GGA--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................TACATAC----TTACAACGAATCTTGCA---CC...............................................................................................................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100020101020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAC------------GGACAGACGGACAGTCGGAAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................TTATATGGTCGGAAACGCTTCCTTC...........................................................................................................................................................................................................................................................................................................................................................25206.701340000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000001000010311000000000000000000000000000000000000006000000000000000002200000000350000028000000000200000000000000000000000000000000000000000000000000150000001000000000000000000000000000160000000
.....................................TCAGATATGGCCAGATCGACTCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
.......................GGACAGTCGGAAAGTCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TCCTTCTGCCTGTTACATACATAC----T....................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ACAGACGGACAGTCGGAAAGTCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000
TAC------------GGACAGACGGACAGTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000
.........................................ATATGGCCAGATCGACTCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
TAC------------GGACAGACGGACAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TGTTACATACATAC----TTACAACGAATCT........................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACGGACAGTCGGAAAGTCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTCAGATATGGCCAGATCGACTCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................CAGACGGACAGTCGGAAAGTCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..C------------GGACAGACGGACAGTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAGACGGACAGTCGGAAAGTCAGATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAC------------GGACAGACGGACAGTCGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAC------------GGACAGACGGACAGTCGGAAAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000
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droEug1
TACG----G----ACGGACGGACGGACGGACGGACAGACGGACATGGCTCAATCGACTTCGCTATTGATCCTGATCAAGAATA----TATATACTTTATAGGGTCGCAAAAGCTTCCTTCTATCTGTTACATACT-------TTTCAACGAATCTAGTATACCCTTTTA-CTC--T----ACGAGTAACGGGTATAAACAT----------CCA-----AA--------------AAAATGTT---------------------------------------CATTTATTTATGCACAAAGTT---ACCT------------------------------------------------------------------------------------------------------------ATCTGG---GTCAT-----------AGGTGCA------CAGACAAGGGTSizeHit CountTotal NormTotal
No Reads
droBia1
TAG------------AAACAGACAGACAGACGGACACACGGACATGGCCAGATCGACTCGGCTAGTGATCCTAATCAAGAATA----TATATACTTTATGGGGTCGAAAACGCTTCTTTCTACCCGTTACATACT-------TTCCGACGAATCCAGTATACCCTTTTG-TTC--T----ACGACTAACGGTTATAAAAAA------AACTCGA-------CCGCCTTGCCTTGTAA-----------------------------------------------------------------T---ATATGTA----TG--TAAATT-TCAAA-------------------AGGATG-------GGTG---CA---------------------------------------------CGAGT---TT----------------------------------TT--SizeHit CountTotal NormTotal
No Reads
droTak1
TACA----GACAGACAGACGGACAGACAGACGGACAGATGGACATGGCTAGATCGACTCGGCTAGTGACCCTGATCAAGAATA----TATATAGTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACT-------TTTGCACGAATCTAATATACCCTTTTA-CTC--T----ACAAGTAACGGGTATAAAAAT----------GACCCTT-----------------------------------TGAGTCGTGCCAT----------------------------------TT---------------------------CAATAACTTAAGATCCACCTA---------------------------------------------------------------------A--------------------------------------AAATATC--SizeHit CountTotal NormTotal
No Reads
droEle1
GAC------------GGACGGACAGACGGACGGGCAGACGGACATGGCTAGATCGACTCTACGAGTGATTCTGAGCAAGAATA----TATATACTTTGTAGGGTCGGAAACGTCTCCTTCACTGCGTTCCAAACT-------TCTGACTGAAATTATAATACCCT-------C--T----GCA-----AGGGTATAAAAAT----------TTT--------------------------------------------------------------------AATTTACTT---------------------------GCGTATAGGTTTAATAACATTGAAGCAATG-A-------TGATTTGCAG-------------------------------------------------------------------------------CTCAA--TAACAAATAATA--SizeHit CountTotal NormTotal
No Reads
droRho1
TACG----G----ACAGACAGACAGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCCTGAACAAGAATA----TATATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACT-------TTTGCACGAATACAATATACCCTTTTA-CTC--T----ACGAGTAACGGGTATAAACAG----------TAAAGGCCAG--------------AAAATAGT---------------------ACTTAAAGGTATTGATCC------------------------------G-------------------G-------------------AAGGAA-------CAT------------------------------------------------CAGCTGAA---GTTAC-----------AGGCGCAC--TGAAGGAGAAAG--SizeHit CountTotal NormTotal
No Reads
droFic1
GAC------------GGACAGACGGACAGACGGACAGACGTACATACATATTTCGATTCTGCTCGTGATGCTGATCAAGAATA----TATATACTTTATGGGGTCTGAGGTGTCTCCTTCACTGCGTTGCAAACT-------TCTGACTGAAATTATAATACCCTTTTG-CTC--T----GCA-----AGGGTATAAATAT----------AAATATT-------------------------------------------------------------------T---TA---------------------CTTGT--------------------------------------------------------------AGTTC---------CTC------------------------TG----------------------AGCAAACAGCAACAAACTACA--SizeHit CountTotal NormTotal
No Reads
droKik1
GAC------------GGACGGACGGACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTGTTGATACTGATCAAGAATA----TATATACTTTATAGGGTCGGAAAGGTCTCCTTCACTGCGTTGCAAACT-------TCTGACTGAAATTATAATACCCT---------------GCA-----AGGGTATAAAAAT----------CGACCTTT-------CTG---------------------------GTC------------------------------------------AA---ACTTATA----GA--CAAAAT-AAAAG-------------------GAAATA-------TAT-----ATAAGTTGTATAT---------------------------------------------T-----------ATACATAC--CATTAAATAATT--SizeHit CountTotal NormTotal
No Reads
droAna3
TAG------------AAACCGACAGACAGACGGACAGACGGACATGCTCATATCGACTCAGGAGGTGATCCTGATCAAGAATA----TATATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACACT-------TTTGACCAAAATTATAATACCCT-------C--T----GCA-----AGGGTATAACAAA----------TT---------------------------ATT---------------------------------------GTTTTATTAATAGAATTAATT---AGACATC----TG--CA-------------------------TGAAAAAATTCATTCCCAGCACCACA---------------------------------------------GTAAT---G------------------T---A--CAACAGATAATT--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................TCTCCTTCACTGCGTTGCACACT-------TT...................................................................................................................................................................................................................................................................................................................................25200.55110110000
................................................................................................................TCTCCTTCACTGCGTTGCACA..............................................................................................................................................................................................................................................................................................................................................21200.306060000
..............................................................................................................TGTCTCCTTCACTGCGTTGCACAC.............................................................................................................................................................................................................................................................................................................................................24200.153030000
.....................................................................................................................TTCACTGCGTTGCACACT-------TTTGACCAAA...........................................................................................................................................................................................................................................................................................................................28200.102200000
....................GACAGACAGACGGACAGACGGACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000002
....................................GACGGACATGCTCATATCGACTCAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................27200.102020000
.......................................................................................................................CACTGCGTTGCACACT-------TTTGACCAAA...........................................................................................................................................................................................................................................................................................................................26200.051000001
................................GACAGACGGACATGCTCATAT..............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
............................................................................................................GATGTCTCCTTCACTGCGTTGC.................................................................................................................................................................................................................................................................................................................................................22200.051001000
.......................................................................................................................CACTGCGTTGCACACT-------TTTGA................................................................................................................................................................................................................................................................................................................................21200.051000001
...................................................................................................AGGGTCGGAGATGTCTCCTTCACTGC......................................................................................................................................................................................................................................................................................................................................................26200.051010000
..............................CGGACAGACGGACATGCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...................CGACAGACAGACGGACAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
droBip1
-AC------------AGACAGACGGACAGACGGACAGACGGACATGCTCATATCAACTCAGGAGGTGATCCTGATCAAGAATA----TATATACTTTATAGGGTCGGAGATGTTTCCTTCACTGCGTTGCACACT-------TTTGGACAAAATTATAATACCCT-------C--T----GCA-----AGGGTATAAAAAC----------GCACGT-----------------------------ATTTTTCTAGATCGAAGTATTTCTAAGTAAAATTCC------------------------------A----AA--AA-----------------------------AAACGC-------CAA------------------------------------------------TTACGGTT---GTATT-----------CAAAAAGA--AAACAGATAAT---SizeHit CountTotal NormTotal
No Reads
dp5
GAC------------GGACAGACGGACGGACGGACAGACAGACATTTCTCAATCGACTCGGCTATTGATGCTGATCAAGAATA----TATATACTTTATGGGGTCGGAAATGATTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCTAATATACCCCAATA-CTCATT----TTGAGTATCGGGTATAAAAAA------TAGGTAA-------ACAAATTTAA-----ATA-------------------------------------------CATTAATT---------------------TG----TG--TAAAGT-TAAAA-------------------ATAAGC-------AGCT---CA---------------------------------------------AGGCT---TT------------------------------ATAGGG--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................CATTTCTCAATCGACTCGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
............................................TTTCTCAATCGACTCGGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
...........................................ATTTCTCAATCGACTCGGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................AGACAGACATTTCTCAATCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
...............................................................................................................................................TACCACAAATCTAATATACCC...............................................................................................................................................................................................................................................................................................................21200.701401400000000
..C------------GGACAGACGGACGGACGGACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................24200.651300000001300
..................................................................................................TGGGGTCGGAAATGATTCCTTCTG.........................................................................................................................................................................................................................................................................................................................................................24110.6470700000000
...........................................................................................................................................................................TCATT----TTGAGTATCGGGTA.................................................................................................................................................................................................................................................................................19200.601201200000000
...........................................................................................................................................................................TCATT----TTGAGTATCGGGTATAAAAAA------....................................................................................................................................................................................................................................................................26200.4080800000000
........................................................................................ATATACTTTATGGGGTCGGAAATG...................................................................................................................................................................................................................................................................................................................................................................24140.3650300200000
................................................................................................TATGGGGTCGGAAATGATTCCTTCTG.........................................................................................................................................................................................................................................................................................................................................................26100.3030300000000
........................................................................................ATATACTTTATGGGGTCGGAAATGA..................................................................................................................................................................................................................................................................................................................................................................25100.3030200000100
...................................................................................................GGGGTCGGAAATGATTCCTTCTGGACGT....................................................................................................................................................................................................................................................................................................................................................28110.2730000000030
.................................................................................................................TTCCTTCTGGACGTTACACACATCCACT......................................................................................................................................................................................................................................................................................................................................28200.2550000000500
.............................................................................................................................................................TATACCCCAATA-CTCATT----TTG............................................................................................................................................................................................................................................................................................21200.2550500000000
.........................ACGGACGGACAGACAGACATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000010
...........................................................................................TACTTTATGGGGTCGGAAATGA..................................................................................................................................................................................................................................................................................................................................................................22100.2020100000100
.................................................................................................ATGGGGTCGGAAATGATTCCTTCTG.........................................................................................................................................................................................................................................................................................................................................................25100.2020200000000
...........................................................................................TACTTTATGGGGTCGGAAATG...................................................................................................................................................................................................................................................................................................................................................................21170.1830300000000
.......................................................................................TATATACTTTATGGGGTCGGAAATG...................................................................................................................................................................................................................................................................................................................................................................25140.1420200000000
...........................................................................................TACTTTATGGGGTCGGAAATGAT.................................................................................................................................................................................................................................................................................................................................................................2390.1110100000000
...............................................................................................TTATGGGGTCGGAAATGATTCC..............................................................................................................................................................................................................................................................................................................................................................22100.1010100000000
.................................................................................................ATGGGGTCGGAAATGATTCCTTCT..........................................................................................................................................................................................................................................................................................................................................................24100.1010100000000
................................................................................................TATGGGGTCGGAAATGATTCCTT............................................................................................................................................................................................................................................................................................................................................................23100.1010100000000
................................................................................................TATGGGGTCGGAAATGATTCC..............................................................................................................................................................................................................................................................................................................................................................21100.1010100000000
..................................................................................................TGGGGTCGGAAATGATTCCTTCTGG........................................................................................................................................................................................................................................................................................................................................................25100.1010100000000
................................................................................................TATGGGGTCGGAAATGATTCCTTCT..........................................................................................................................................................................................................................................................................................................................................................25100.1010100000000
.....................................................................GCTGATCAAGAATA----TATATACT....................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000200
.................................................................................................ATGGGGTCGGAAATGATTC...............................................................................................................................................................................................................................................................................................................................................................19100.1010100000000
...........................................................................................................................................................................TCATT----TTGAGTATCGGGTATAAAAA...........................................................................................................................................................................................................................................................................25200.1020000000020
...............................................................................................TTATGGGGTCGGAAATGATTCCT.............................................................................................................................................................................................................................................................................................................................................................23100.1010100000000
...............................................................................................TTATGGGGTCGGAAATGA..................................................................................................................................................................................................................................................................................................................................................................18110.0910000000100
.......................................................................................TATATACTTTATGGGGTCGGAAATGAA.................................................................................................................................................................................................................................................................................................................................................................27110.0910100000000
..........................................................................................ATACTTTATGGGGTCGGAAATGAA.................................................................................................................................................................................................................................................................................................................................................................24110.0910100000000
.......................................................................................................TCGGAAATGATTCCTTCTGGACG.....................................................................................................................................................................................................................................................................................................................................................23110.0910100000000
..................................................................................................TGGGGTCGGAAATGATTC...............................................................................................................................................................................................................................................................................................................................................................18110.0910100000000
.......................................................................................................TCGGAAATGATTCCTTCTGGACGTTA..................................................................................................................................................................................................................................................................................................................................................26110.0910100000000
......................................................................................................GTCGGAAATGATTCCTTCTGG........................................................................................................................................................................................................................................................................................................................................................21110.0910100000000
.......................................................................................................TCGGAAATGATTCCTTCTGGACGT....................................................................................................................................................................................................................................................................................................................................................24110.0910000000100
..................................................................................A----TATATACTTTATGGGGTCGGAAATG...................................................................................................................................................................................................................................................................................................................................................................26140.0710000000100
.........................................................................................TATACTTTATGGGGTCGGAAATG...................................................................................................................................................................................................................................................................................................................................................................23150.0710100000000
..............................................................................................................TGATTCCTTCTGGACGTTACACAC.............................................................................................................................................................................................................................................................................................................................................24150.0710010000000
........................................................................................ATATACTTTATGGGGTCGGAAAT....................................................................................................................................................................................................................................................................................................................................................................23160.0610100000000
................................................................................................TATGGGGTCGGAAATGATTCCA.............................................................................................................................................................................................................................................................................................................................................................22190.0510100000000
................................................................................................TATGGGGTCGGAAATGATTCCTTCA..........................................................................................................................................................................................................................................................................................................................................................25190.0510100000000
....................GACGGACGGACGGACAGACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.................................................................................TA----TATATACTTTATGGGG............................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
....................GACGGACGGACGGACAGACAGACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
...............................................................................................................................................................................T----TTGAGTATCGGGTATAAAAAA------T...................................................................................................................................................................................................................................................................23200.0510000000100
.........................................................................................TATACTTTATGGGGTCGGAAATGAAA................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
.............................................................................................................................GTTACACACATCCACTTTTA..................................................................................................................................................................................................................................................................................................................................20200.0510100000000
........................GACGGACGGACAGACAGACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000010
................................................................................................TATGGGGTCGGAAATGAAA................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.........................................................................................................................................CACTTTTACCACAAATCTAATATACC................................................................................................................................................................................................................................................................................................................26200.0510100000000
......................CGGACGGACGGACAGACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000100
.................................................................................................................TTCCTTCTGGACGTTACACA..............................................................................................................................................................................................................................................................................................................................................20200.0510000010000
droPer2
GAC------------GGACAGACGGACGGACGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATA----TATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATACACTTTTACCACAAATCTAATATACCCCAATA-CTCATT----TTGAGTATCGGGTATAAACAC----------ACACAG----ACACGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGATACACACTTATAAACAGAA--AATACACGCACTGGT---A---------------GGGCACA------CAG---ACA--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................CTCATT----TTGAGTATCGGGTATAAACA...........................................................................................................................................................................................................................................................................26204.35870861000
...........................................................................................................................................................................TCATT----TTGAGTATCGGGTATAAACA...........................................................................................................................................................................................................................................................................25200.50100100000
..........................................................................................................................................................................CTCATT----TTGAGTATCGGGTATAAAC............................................................................................................................................................................................................................................................................25200.5010091000
............................................................................................................................................................................CATT----TTGAGTATCGGGTATAAACA...........................................................................................................................................................................................................................................................................24200.357070000
...........................................................................................................................................................................TCATT----TTGAGTATCGGGTATAAAC............................................................................................................................................................................................................................................................................24200.204040000
................GACAGACGGACGGACGGACAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.204400000
..C------------GGACAGACGGACGGACGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204040000
.......................................................................................................TCGGAAACGATTCCTTCTGGACGTTA..................................................................................................................................................................................................................................................................................................................................................26200.204040000
.............................................................................................................................................................................ATT----TTGAGTATCGGGTATAAAC............................................................................................................................................................................................................................................................................22200.153210000
.............................................................................................CTTTATGGGGTCGGAAACG...................................................................................................................................................................................................................................................................................................................................................................19200.153000003
...............GGACAGACGGACGGACGGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000003
............................................................................................................................................................................CATT----TTGAGTATCGGGTATAAACAC----------................................................................................................................................................................................................................................................................2570.141010000
.............................................................................................................................................................................ATT----TTGAGTATCGGGTATAAACA...........................................................................................................................................................................................................................................................................23200.102020000
................................................................................................................................ACACACATACACTTTTACCAC..............................................................................................................................................................................................................................................................................................................................21200.102020000
.......................................................................................................................CTGGACGTTACACACATACACTTTTAAA................................................................................................................................................................................................................................................................................................................................28200.051010000
........................................................................................................................................................................A-CTCATT----TTGAGTATCGGGTATAAACA...........................................................................................................................................................................................................................................................................27200.051010000
...............................GGACAGACAGACATGGCTCAATCGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.................................ACAGACAGACATGGCTCAATCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
............................................................................................................................CGTTACACACATACACTTTTACC................................................................................................................................................................................................................................................................................................................................23200.051010000
............................................................................................................................................................................CATT----TTGAGTATCGGGTATAAAC............................................................................................................................................................................................................................................................................23200.051100000
droWil2
TACG----G----ACGGACGGACGGACGGACGGACAGACGGACATGGCTAGATCGACTCGGTTTTTGATCCTGATCAAGAATA----TATATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACA-------TTTTGGCGACTTTAATATACCATTTCA-CCC--T----ATGGGTGTATGGTATAAAAAT----------TAA----------------------AAACAGTTGTT-----------------------------------TT-------------TGTATT---CTTTTCC----GA--TATATT-TCG-G------------------------C-------CAC------------------------------------------------TCATCGGT---GTCGT-----------CTTCAAGG--CAACTATAAACA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................TATATACTTTGTGGGGTCGGA.......................................................................................................................................................................................................................................................................................................................................................................21200.25505000
...................................................................................................................................................................................................................................................TGTT-----------------------------------TT-------------TGTATT---CTTTTCC----GA--TATATT-...........................................................................................................................................2750.20101000
.................................................................................................................................................................................................................................................GTTGTT-----------------------------------TT-------------TGTATT---CTTTTCC----GA--TA................................................................................................................................................2550.20101000
......................................................................................................................................................................................................................................................T-----------------------------------TT-------------TGTATT---CTTTTCC----GA--TATATT-T..........................................................................................................................................2580.13101000
......................CGGACGGACGGACAGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10220000
..................................................................................................................................................GGCGACTTTAATATACCATTTCA-CCC--....................................................................................................................................................................................................................................................................................................26200.10202000
........................................................CTCGGTTTTTGATCCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
..........................................................................................................................................................................CCC--T----ATGGGTGTATGGTATAAAAAT----------................................................................................................................................................................................................................................................................25200.05100010
..................................CAGACGGACATGGCTAGATCGACTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
...........................................................................................TACTTTGTGGGGTCGGAGATGC..................................................................................................................................................................................................................................................................................................................................................................22200.05100010
.........................................................TCGGTTTTTGATCCTGATCAAGAATA----............................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
...........................................ATGGCTAGATCGACTCGGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
droVir3
TACA----T----ACGGACGGACGGACGGACAGACAGACGGACATGGCTAAATCGACTCAGCTATTGATGCTGATCAAGAATA--------TACTTTATGGGATCGGAGATGCTTCCTTCTGCCTGTTACATACATTTGGATTTTGCACAAATACAATATACCCTTATA-CCCATTTTTAATGGGTTCAGGGTATAAAAGT----------G---------------------------------------------------------------------------------------TATT---AAACATT---TTTCATACATCTTGAGTAACCGAGGACCCAGCCA---------------------------------------------------------------------GG-CT-----TGGCGAAATATCACCT--A---------AGTCAACT--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................TACATTTGGATTTTGCACAAATACAATA....................................................................................................................................................................................................................................................................................................................28202.95590000000000000000000000000000000000590000000000000000000000000000
....................................................................TGCTGATCAAGAATA--------TACTTTATGGG.............................................................................................................................................................................................................................................................................................................................................................................2640.251000000000000000000000000001000000000000000000000000000000000000
..........................................................................TCAAGAATA--------TACTTTATGGG.............................................................................................................................................................................................................................................................................................................................................................................2050.201000000000000000000000000000100000000000000000000000000000000000
......................................................................CTGATCAAGAATA--------TACTTTATGG..............................................................................................................................................................................................................................................................................................................................................................................2360.171000000000000000000000000000000000000010000000000000000000000000
..........................................................................TCAAGAATA--------TACTTTATGG..............................................................................................................................................................................................................................................................................................................................................................................1970.141000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................TACATTTGGATTTTGCACA.............................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000200000000000000000000000000000000000
................................................................................ATA--------TACTTTATGGGATCGGAG......................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
.................................................................................TA--------TACTTTATGGGATCGGAGATGC..................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................TGTTACATACATTTGGATTTTGCACA.............................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................TACTTTATGGGATCGGAGATG...................................................................................................................................................................................................................................................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................CATACATTTGGATTTTGCACAAATACA.......................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
................................................................................................TATGGGATCGGAGATGCTTCCTTCTGCCTGTTACA................................................................................................................................................................................................................................................................................................................................................35200.051000000000000000000000000000000000000000000000100000000000000000
..................................CAGACGGACATGGCTAAATCG............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000000000000000000000000000000000000000000000000000000000000
.............................................................CTATTGATGCTGATCAAGAAT.................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000100000000000000000000000000000000000000000000000000000000
..............................CAGACAGACGGACATGGCTAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000001000000000000000000
...........................................................................................TACTTTATGGGATCGGAGATGC..................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................ATACATTTGGATTTTGCACAAAT..........................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ATTTGGATTTTGCACAAATACA.......................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................ACAAATACAATATACCCTTATA-CCC......................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TACATACGGACAGACGGACGGACGGACGGACAGACAGACGGACAGGGCCAAATCGACTCAGCTCGTCGCCCTGATCAAGAATA----TATATACTTTGTGGGGTCGC-CACGCCTCCTTCTGCCTGTTACATACA-------TTTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAATAAT------AATATTA-------TCAACTTAAT-----GT---------------------------------------------------------------TT---ATACATA----TG--TATATT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------CTTCGCGC--CATCTAGTAGTA--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................TT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------C.......................2681.7514600080
.....................................................................................................................................................................................................................................................................................................................................TT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------........................2580.887700000
......................................................................................................................................................................................................................................................................................................................................T-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------CT......................2680.635500000
.....................................................................................................................................................................................................................................................................................................................................TT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------CT......................2780.504400000
.....................................................................................................................................................................................................................................................................................................................................TT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-....................................2480.504100030
...................................................................................................................................................................................................................................................................................................................................TATT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-....................................2670.433100020
......................................................................................................................................................................................................................................................................................................................................T-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------........................2480.383300000
....................................................................................................................................................................................................................TA-------TCAACTTAAT-----GT---------------------------------------------------------------TT---ATACATA----TG--T.................................................................................................................................................2640.251000010
.............................................................................................................................................................................................................................TCAACTTAAT-----GT---------------------------------------------------------------TT---ATACATA----TG--T.................................................................................................................................................2440.251000010
......................................................................................................................................................................................................................................................................................................................................T-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------C.......................2580.252200000
................................................................................................................................................................................................................................................................................................................................................................AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------CTTCGCGC--C.............2860.171100000
.....................................................................................................................TTCTGCCTGTTACATACA-------TTTC.................................................................................................................................................................................................................................................................................................................................22200.153300000
...................................................................................................................................................................................................................................................................................................................................TATT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------CT......................2970.141100000
........................................................................................................................................................................................................................................................................................................................................CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACATGC---GTC-T-----------CT......................2580.131100000
.............................................................................................................................................................................................................................................................................................................................................................................CTT--------------------------------------------------ACATGC---GTC-T-----------CTTCGCGC--..............2190.111000001
........................................................................................................................................................................................................................................................................................................................A----TG--TATATT-CCG-G-------------------AAAATG-------CTT--------------------------------------------------ACA..............................................2590.111000001
..................................................AATCGACTCAGCTCGTCGCCCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
................GACGGACGGACGGACAGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..........................................CAGGGCCAAATCGACTCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
CGT------------GTTCAGACAGACGGACGGACAGACGGACATGGCTATATCGACTCGGCTGTTGACCCTGATCAAGAATATACATATATACTTTATGGGGTTGGAGATGCTTCCTTCTGCCTGTTACATACA-------TTATCACAAAACCATTATACCCTTTGA-CCCATTTTTAATGGATTCTGGGTATAAAAAT----------GCG-----A------------TATTA----------------------------------------------------TA---------------------TATGT--------------------------------------------------------------ATTAT---------CTT-------------------------------------------------------------------TC--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:38 PM