ID:

dya_903

 Coordinate:

3R:945840-945990 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.9 -20.8 -20.8 -20.7

Flybase annnotation

exon [dyak_GLEANR_8946:1]; CDS [Dyak\GE25329-cds]; intron [Dyak\GE25329-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
Hoyak2DNAhAT-Ac-
mature
  1. 2L:14150581-14150606 -
  2. 2R:1353402-1353427 -
  3. dya_903  3R:945863-945888 -
  4. v2_chrUn_6349:10011-10036 -
  5. v2_chr2L_random_028:1727971-1727996 -
  6. v2_chr3R_random_170:272294-272319 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAACCAGCACAACTGCGGCAGCAACAAAGCTAGCATCAGTAGCCACCAATGTGAGTTGTATAAACTTTTCTTATCAGCCGAGAGATTTAGCGGCAAGTTCGTTTTATTAGTTCTTGCTATATCCATAAATAAATCAAATAAACAAGAGAGAACGCTATATTCGAGTTCCCCGACTATCTGATACCCGTTACTCAGCTAGTGGAAGGGCGAAGGAGAGTCTTAAACACAGTTTTTGACGGTTTGTAGGCGTT
**************************************************.((.((((....(((......((((((..........((((((..((((((........(((((..((..........................))..)))))........))))))..))).))).))))))...)))...))))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 GSM1528802
follicle cells		 M056
embryo
 V052
head
..................................ATCAGTAGCCACCAATGTGAGTTGT................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................CGCTATATTCGAGTTCCCCGACTATC......................................................................... 26 0 6 0.17 1 0 0 1 0 0
..............................................................................................................................................................................................................................AACACAGTTTTTGACGGTTTGTAGGC... 26 0 6 0.17 1 1 0 0 0 0
.............................................................................................................GTTCTTGCTATAACTATAATT......................................................................................................................... 21 3 19 0.16 3 0 3 0 0 0
..............................................................................................................................................................ATTCGAGTTCCCCGACTATCTGATACC.................................................................. 27 0 9 0.11 1 0 0 0 1 0
.............................................................................................................................................................................................ACTCAGCTAGTGGAAGGGCG.......................................... 20 0 11 0.09 1 0 0 0 0 1
........................................................................................................................................................CGCTATATTCGAGTTCCCCG............................................................................... 20 0 13 0.08 1 0 1 0 0 0
............................................................................................................................................................ATATTCGAGTTCCCCGACT............................................................................ 19 0 16 0.06 1 0 1 0 0 0
........................................................................................................................................................................................CCGCTACTCAGCTAGTGGAAGGGC........................................... 24 1 19 0.05 1 0 0 0 1 0
.............................................................................................................GTTCTTGCTATAACTATA............................................................................................................................ 18 2 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................TTACTAAGCTAGTGGAAGGGC........................................... 21 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................................CAGGTTTTGACGGTATTTA...... 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ATTGGTCGTGTTGACGCCGTCGTTGTTTCGATCGTAGTCATCGGTGGTTACACTCAACATATTTGAAAAGAATAGTCGGCTCTCTAAATCGCCGTTCAAGCAAAATAATCAAGAACGATATAGGTATTTATTTAGTTTATTTGTTCTCTCTTGCGATATAAGCTCAAGGGGCTGATAGACTATGGGCAATGAGTCGATCACCTTCCCGCTTCCTCTCAGAATTTGTGTCAAAAACTGCCAAACATCCGCAA
**************************************************.((.((((....(((......((((((..........((((((..((((((........(((((..((..........................))..)))))........))))))..))).))).))))))...)))...))))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 GSM1528802
follicle cells		 V052
head
.............ACGCCGTTGTTGGTTCTATCG......................................................................................................................................................................................................................... 21 3 4 0.50 2 2 0 0 0
.............ACGCCGTTGTTGGTTCTATCGT........................................................................................................................................................................................................................ 22 3 3 0.33 1 1 0 0 0
............................................................................................................................................................................................................CCCGAGTCCTCTCAGAATTTGTGTCA..................... 26 2 7 0.14 1 0 1 0 0
...............................................................................................................................................................AAGCTCAAGGGGCTGATAGACT...................................................................... 22 0 14 0.07 1 1 0 0 0
..............CGCCGTTGTTGGTTCTATCGT........................................................................................................................................................................................................................ 21 3 15 0.07 1 1 0 0 0
.........................................TGGTGGTAACACTCAACAT............................................................................................................................................................................................... 19 2 16 0.06 1 0 0 1 0
..................................................................................................................................................................................................................TCCTCTCAGAATTTGTGTCAA.................... 21 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................TGGGCAATGAGTCGATCACCT................................................ 21 0 20 0.05 1 1 0 0 0
.............................................................................................................................................................................................GGAGTCGGTCACCTTCCCGCT......................................... 21 2 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3R:945790-946040 - dya_903 TAACC-AGC-----------ACAACTGCGGCAG--CAACAAAGCTAGCATCAGTAGCCACCAATGTGAGTTGTATAAACTTTT---------CTTATCAGCCGAGAGATTTAGCG---------------GCAAGTTCGTTTTATT---------------------------------------------------------------------------------------------------------------------AGTTCTT---------------------------------------------------------------------------GCTATATCCATAAAT--------------------------------------------------------------------------------------------------------------------------AAAT----CAAAT----AAACAAGAGAGAAC-GCTATATTCG--AGTTCCCCGACTATCTGATACCCGTTA----CTCAGCTAGT------------------------------------GGAAGGGCGAAGGAGAGT----------CTTAAACA--------------------------------------------------CAGTT----------------------------------TTTGACGGTTTGTAGGCGTT
droEre2 scaffold_4929:18000465-18000699 - GCAGC-AGC-----------GCAGCTTCGACAA--GGGCGACTCTG--------------------------------------------------------------------------------------------------------------------------------GCATTGA-GAACGATTTCCGGAAGGAGTCCTTCAACGGGGACT-------------------TGAC--C-ACAAGGTAGGC--------GAATAATCTTGCCTT---------------------------ATATAGGTATCAA------------T-------------------------------------------------------------------------------------------------------------------------------------------------------TTGT----AA----TAACTTTATGTGAAAAC-AGAAGAGTAG--AGTTTCTCGACTATCAGATACCCGTTA----CTCAGCTAGT------------------------------------GGAAGTGCGAACGAGAAA----------TTTCA----------------------------------------------------------------------------------------GCTTTCTTACGCCA-TTTCGATAG
droSec2 scaffold_30:518956-519175 + TGTGATT-TAT----------------T-----AC----------------------------------------------T-------------ATCGTGTGATGGATCTGACG---------------TGACGGTATCA-------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------CAGTATTT--------------------------------GCCAGATCTGTAAAG--------------------------------------------------------------------AG-------------AGAAAT---------------------------------GTTT----ACATT----AAACAAGAGAGAAT-GCTATAATCG--AGTTTCCCGACTATCTGATACCCGTTA----CTCAGCTAGTGT-----------------------------------GTATTGGGGAATAGAT-TAAGAAAAAATTTAAAAATTAAACGTCA----------------------------------------CCGG-----------------------------------TTCGGAGGCCTTAGGGCGTT
droSim2 3r:394850-395031 + TTGCA-C-AAA-------------------------------------------------------------------GACTC---------GTTATCA------------------------------------------------------------------------------GTGG-CG----------------------------------------------------------------------------------------------------------------------------------------------ACAATTTGTGCGAGTGCCTAATAATAACAGAAAG-------------------------------------------------------------------------------------A------------------------------------ATCC----TAATC----AAACAAG-GGGATC-GCTATAGTCC--AATTTCTCGAATATCAGATACCCGTTA----CTCAGCTAGT------------------------------------GGGATTGCGAACAAAATA----------TTTGTTTC--------------------------------------------------AAATC----------------------------------GATAGAAGTTTGTAAGCGTT
dm3 chr3LHet:2255683-2255857 - TATTA-A-CATTTCCAGAAAAGAAATAT-----------------------------------------------------AA---------CAGTTC-----AAG-----------------------------GGC-----CTT---------------------------------------------------------------------------------------------------------------------TACTAGTG------------------------------------CTAAATATCCG------------G-------------------------------------------------------------------------------------------------------------------------------------------------------TTAT----AAATA----AAACAAAAGAAAAT-GCTATAGTCG--AGTTCCCCGACT-CGAGTTAGCCGTTA----CTTAGCTAGG------------------------------------GGA-ATGCGAACACATTG----------A---------------------------------------------------------CCGTT----------------------------------TTTGGTGTTTTGTAGGTGAA
droEug1 scf7180000407642:33735-34047 - AACTA-G-CAC-------------------------------------------------------------------CGCA-------------AT----------------------------------------TTCTTTGACAACGTCAACCATAACAACAACAACAACCGCAACAG-TAACG-------------------------------ACAGCGCGATTAACGACGTCAT------------------------------------------------------------------------------------------------------------------------CAGCTAGCAGCGAAAACATTA------------------------------------------------------------------------ATACTTCTG-CTGCTGCGCTACCCGAAAAAGAG----AA----CAAAAACAAGAGGAAAC-GCTATAGTCG--AGTGCCGCGACCATAAGATACCCGTTA----CTGTTTTACA----------AAATTTTAAAATATTATTTTGCTAGTGGAAATTCACAAGG---------------------------CGCCACCTATTGTCAGAGGAAGTATGTTGAGTATGCTTATAGTGAC-GTCAC----------------------------------TGCCCAT-GTGAGGCCTT
droBia1 scf7180000302155:2883100-2883306 + GACAA-C-AAA-------------------------------------------------------------------AATTCTAGTTTCGT-----------------TATCCTTTAACCTGGGGTAC---------------------------------------------AGATCACTTTTCG-------------------------------AT---------------TTCAGACTG---------TTGAATATAA--------------TTTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCGGA-TTGTTATATTG--------TTAA----AA----AAAAAACAA------------GCAATCG--AGTGCCTTCACTTCGAGACACCCGTTA----CTCAGCTAAC------------------------------------AAACTTAAAAATA-----------------------------------------------------------------------------------------------------TCCCATTGATATTTAGTCTGTTGTTGGCGTT
droTak1 scf7180000414323:115802-116075 - TAACA-A-AAA----------CAAAAGCAACAG--CA-----------------------------------------------------------------------------------------------------------------------------------------ACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGGCACCGGTGGCATTGCCGTAGTTTTGGCATCAACATAATTACTTGTTTCCACTTTTGTACTCGGCTTCCACTGTCGCAGTTGCGTTTTTATTGTGGCCCACT----------------GTATC-TAAT--TAAAAACTAGAGAGAAC-GCTATAGTCG--GGTGCCCCGACTATCAGATACCCGTTA----CTCAGCTAAA------------------------------------GGGAGTGCGAAAGAGAT-GGAGAAAA-----------------------------------------------------------AC--------------------TTTGATCCGCCGTAACTTTTTAACGAATGGTCCGATTT
droEle1 scf7180000490632:10605-10818 - AGTTG-T-ATC--------A--C-------------------------------------------------------TTT--------------ATCTTG-----------------------TAGAC---------------------------------------------GGAACAT-TCACG-------------------------------AC---------------ATTGCGCCG---------GTAAATTTAT--------------TTTGTGCTTGCCATAAAA----------------------CCCCTTCAAAAAACTTTTG-------------------------------------------------------------------------------------------------------------------------------------CAATT--------CCAG----AA----TAAAAACAAGAGAGAAC-GCTATAGTCG--AGTTTCCCGACTATTAGATA------A----CTCAGCCAAC------------------------------------AAA-CTTCAAACAGAGCAGAGGA-----C-------------------------------------------------------------------------------TTAATAACCCTTAA----------CTTCAAAAATATA
droRho1 scf7180000780072:113201-113472 + TAAAT-CGG-----------ACAATTGTAACTA--TATTAAAATAATCATCAAAAATCAATAAAGAAATCAATATAATCT-----------------------------------TTTGCGTGGCATCCAGCAAATTTGTAT------------------------------------------------------------------------------------------------------GCATAGAAT---------------------------------GCGATAAAAACTCGCAAATATGTCT---------------GAAACTTGTG-------------------------------------------------------------------------------------------------------------------------------------CA-------------------GT----GAAAAACAAGAGAGAAC-GCTATAGTCG--AGTGCCCCGACTATCAGATACCCGTTA----CTCAGCTAAA------------------------------------GGGAGTGCGAGGGAGAT-GGAGA---------------------------------------------------------TAGAAAC--------------------TTTGATCACGCATAACTTTTTAACGAATGGTCCGATTT
droFic1 scf7180000450041:9702-9881 - AATTT-C-AAT----------------------------------------------------------------------------------------------------------------------------------CTGTTAACTTGA-----------------------------------------------------------------------------------------------------------------ACT------------------------------------AACCGCATACAAC-----------------------------------------T--------------------------------------------------------------------------------------------------------------------------CTG---CCAAAAC----AAACAAGTGAGAAC-GCTATAGTTG--GGTGCCCCGACTATCAGTTACCAGTTAAATACAGAGCCAGA------------------------------------TGTATTGTAT-TGTGA------------TTTAAATA--------------------------------------------------AAGTTCCTGCATTGGCTTAGA----AGAG----------TTCATTGGCTTATGAGCA-T
droKik1 scf7180000302682:1553037-1553138 - AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGAAAGAAC-GCCATTGTCG--AGTGCCCCGAATATGAGATACCCGGCA----CTCAAG---GCTCTATTACAAAACA-------------------------------------T-TAAACAAAGACTCAAATA--------------------------------------------------CAGCT-----------------------------------------------------T
droAna3 scaffold_12947:768524-768658 + CTTAT-T-AAT----------------C-----AA----------------------------------------------GA---------CATTTT-----AGA---------------------------------------GACCTC----------------------------------------------------------------------------------------------------------------AA-----------------------------------------------------------------ATTGTATTACTT---GTTAGTCCCCTAACA--------------------------------------------------------------------------------------------------------------------------AAGTCCCCAAAACAAAAAAAAAACAAAGAACGGCTGAAGTCG--AGTTTCCCGACTGTATAATATCCGGTA----TTCATCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396426:362291-362423 - TCTCCTC-TAT----------------C-----GAG------------------------------------------AGCTTCAGCTTCGC-----------------TAT-------------------------------GTC---------------------------------------------------------------------------------------------------------------------TAGTCGTGCCGCACT---------------------------CTCTGTTTATTAC-----------------------------------------A--------------------------------------------------------------------------------------------------------------------------ATAC----ACAAT----AAATTAGAAAGAACGGCTATATTCG--AGTTCCCCGACTATTTTATACACGGTA----CTCGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:9376153-9376246 + ATTCA-G-TTG-------------------------------------------------------------------CACT-------------GT----------------------------------------CGTTCCATTAATGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT---------------------------------------------------------------------------------------------------------------------------------------ACA----A--------CAACAAACTAAAGA-GATGTAGTCG--AGTTTTCCGACTATTAAATACCCAGTA----CTCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_6:456028-456138 - GGAAA-G-TTC--------G--T----T--------------------------------------------------------TAC--------ATCTTT---------TA-------------------------------ATT---------------------------------------------------------------------------------------------------------------------TATTTGTG------------------------------------CTATTTTTAA------------------------------------------C--------------------------------------------------------------------------------------------------------------------------ATTT----TTTTC----AAACGAGAAAAAAT-GCCTTAGTCG--AGGGTTCCGACTACAAAATACCCGCTT----CTCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004914:14624-14754 + ATATT-A-ATA--------A--ATAAATAAATA--TA-----------------------------------------------------------------------------------------------------------------------------------------GTAACGA-TCGCT-------------------------------------AAATCAACG---------CT---------ACATA-----TATATATTCTGCGC------------------------------------------------------------------------GCATACTAAGC--------------------------------------------------------------------------------------------------------------------------CAGTATTCATA---CTAAAATCAGAGAGAAA----------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------CAGTT----------------------------------TTGTTTAATTTGCGGGGGCG
droVir3 scaffold_12734:344626-344700 - TCTTA-T-TCC--------A--A----C-----A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAT--------------------------------------------------------------------------------------------------------------------------AAAT----TAATA----AAACAAGTAAGAGT---TCTAGTCGGGAAGCTCCCGACTAGGGGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:8323985-8324173 + ACTGC-AGCAG---------GTGGCAACGAAAA--CAGCGCTTATT--------------------------------------------------------------------------------------------------------------------------------GTAATAA-GCACGAGTCAAAGTGCAATTTCTTTACAAACTTCCCAC---------------AGTACATGG---------ATAGATTAAG--------------AGGGATGTT--------------------------------------AGAA--------TAGTTT---GTCAATTCCTTAAAA--------------------------------------------------------------------------------------------------------------------------AAAT----CTATT----AAACAAGTAAGAAG-GCTCTAGTCGA-GACTGCTCGACTAGGAGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:14049376-14049517 + TTGTT-T-ACC--------A--A----C-----AAGAAGTTTTGCG--------------------------------------------------------------------------------------------------------------------------------GCAATGG-ATGTGGTTTGTGGTTTAACTGCTTTTATGGTAACA---------------------------------------------------------CAAA--------------------------TATATATATATATA-----------------------------------------T--------------------------------------------------------------------------------------------------------------------------ATAC----AA----TAAAAACAAGTAAGAAC-AACTGCTTCA--GGCTCCTCGAACATTACATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TAACC-AGC-----------ACAACTGCGGCAG--CAACAAAGCTAGCATCAGTAGCCACCAATGTGAGTTGTATAAACTTTT---------CTTATCAGCCGAGAGATTTAGCG---------------GCAAGTTCGTTTTATT---------------------------------------------------------------------------------------------------------------------AGTTCTT---------------------------------------------------------------------------GCTATATCCATAAAT--------------------------------------------------------------------------------------------------------------------------AAAT----CAAAT----AAACAAGAGAGAAC-GCTATATTCG--AGTTCCCCGACTATCTGATACCCGTTA----CTCAGCTAGT------------------------------------GGAAGGGCGAAGGAGAGT----------CTTAAACA--------------------------------------------------CAGTT----------------------------------TTTGACGGTTTGTAGGCGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................ATCAGTAGCCACCAATGTGAGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GCTATATTCG--AGTTCCCCGACTATC...............................................................................................................................................................................................................2660.17100000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--------------------------------------------------CAGTT----------------------------------TTTGACGGTTTGTAGGC...2660.17100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCG--AGTTCCCCGACTATCTGATACC........................................................................................................................................................................................................2790.11100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CTCAGCTAGT------------------------------------GGAAGGGCG........................................................................................................................................20110.09100001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GCTATATTCG--AGTTCCCCG.....................................................................................................................................................................................................................20130.08101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCG--AGTTCCCCGACT..................................................................................................................................................................................................................19160.06101000000000
droEre2
GCAGC-AGC-----------GCAGCTTCGACAA--GGGCGACTCTG--------------------------------------------------------------------------------------------------------------------------------GCATTGA-GAACGATTTCCGGAAGGAGTCCTTCAACGGGGACT-------------------TGAC--C-ACAAGGTAGGC--------GAATAATCTTGCCTT---------------------------ATATAGGTATCAA------------T-------------------------------------------------------------------------------------------------------------------------------------------------------TTGT----AA----TAACTTTATGTGAAAAC-AGAAGAGTAG--AGTTTCTCGACTATCAGATACCCGTTA----CTCAGCTAGT------------------------------------GGAAGTGCGAACGAGAAA----------TTTCA----------------------------------------------------------------------------------------GCTTTCTTACGCCA-TTTCGATAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................GACAA--GGGCGACTCTG--------------------------------------------------------------------------------------------------------------------------------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGATACCCGTTA----CTCAGCT........................................................................................................................................................................................22200.0510100000
droSec2
TGTGATT-TAT----------------T-----AC----------------------------------------------T-------------ATCGTGTGATGGATCTGACG---------------TGACGGTATCA-------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------CAGTATTT--------------------------------GCCAGATCTGTAAAG--------------------------------------------------------------------AG-------------AGAAAT---------------------------------GTTT----ACATT----AAACAAGAGAGAAT-GCTATAATCG--AGTTTCCCGACTATCTGATACCCGTTA----CTCAGCTAGTGT-----------------------------------GTATTGGGGAATAGAT-TAAGAAAAAATTTAAAAATTAAACGTCA----------------------------------------CCGG-----------------------------------TTCGGAGGCCTTAGGGCGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAACGTCA----------------------------------------CCGG-----------------------------------TTCGGA..............2111.0011000
...................................................................................................TGTGATGGATCTGACG---------------TGACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGTGT-----------------------------------GTATTGGGGAA.....................................................................................................................................2011.0010100
........................................................................................................................................................................................................................................................................................................................T--------------------------------GCCAGATCTGTAAAG--------------------------------------------------------------------AG-------------AGA..............................................................................................................................................................................................................................................................................................................2111.0010100
...........................................................................................................ATCTGACG---------------TGACGGTATCA-------------------------------------------------------------------------------------------------------------------------------------CT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
droSim2
TTGCA-C-AAA-------------------------------------------------------------------GACTC---------GTTATCA------------------------------------------------------------------------------GTGG-CG----------------------------------------------------------------------------------------------------------------------------------------------ACAATTTGTGCGAGTGCCTAATAATAACAGAAAG-------------------------------------------------------------------------------------A------------------------------------ATCC----TAATC----AAACAAG-GGGATC-GCTATAGTCC--AATTTCTCGAATATCAGATACCCGTTA----CTCAGCTAGT------------------------------------GGGATTGCGAACAAAATA----------TTTGTTTC--------------------------------------------------AAATC----------------------------------GATAGAAGTTTGTAAGCGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTC--------------------------------------------------AAATC----------------------------------GATAGAAGTTTGTA......2712.00200010010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTA----CTCAGCTAGT------------------------------------GGGATTGC.........................................................................................................................................2421.50300010000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTC--------------------------------------------------AAATC----------------------------------GATAGAAGTTTGTA......2511.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTA----CTCAGCTAGT------------------------------------GGGATTGCGAA......................................................................................................................................2720.50100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTA----CTCAGCTAGT------------------------------------GGGATTGT.........................................................................................................................................2420.50100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTA----CTCAGCTAGT------------------------------------GGGATTG..........................................................................................................................................2320.50100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATACCCGTTA----CTCAGCTAGT------------------------------------GG...............................................................................................................................................26200.15300000003000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTA----CTCAGCTAGT------------------------------------GGGA.............................................................................................................................................20130.08100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGATACCCGTTA----CTCAGCT........................................................................................................................................................................................24140.07100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATACCCGTTA----CTCAG..........................................................................................................................................................................................19200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGATACCCGTTA----CTCAGC.........................................................................................................................................................................................22200.05100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATACCCGTTA----CTCAGCTAGT------------------------------------G................................................................................................................................................25200.05100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATACCCGTTA----CTCAGCT........................................................................................................................................................................................21200.05100000010000000000
dm3
TATTA-A-CATTTCCAGAAAAGAAATAT-----------------------------------------------------AA---------CAGTTC-----AAG-----------------------------GGC-----CTT---------------------------------------------------------------------------------------------------------------------TACTAGTG------------------------------------CTAAATATCCG------------G-------------------------------------------------------------------------------------------------------------------------------------------------------TTAT----AAATA----AAACAAAAGAAAAT-GCTATAGTCG--AGTTCCCCGACT-CGAGTTAGCCGTTA----CTTAGCTAGG------------------------------------GGA-ATGCGAACACATTG----------A---------------------------------------------------------CCGTT----------------------------------TTTGGTGTTTTGTAGGTGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAAT-GCTATAGTCG--AG............................................................................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAGAAAAT-GCTATAGT..................................................................................................................................................................................................................................2021.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGAAAAT-GCTATAGTCG--..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAAT-GCTATAGTCG--A.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGTTA----CTTAGCTAGG------------------------------------GGA-ATGCGA.......................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGG------------------------------------GGA-ATGCGAACACAT.................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG----------A---------------------------------------------------------CCGTT----------------------------------TTTGGTGTTTTGTAGGT...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-GCTATAGTCG--AGTTCCCC......................................................................................................................................................................................................................21200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000040000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAGAAAAT-GCTATAGC..................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAT-GCTATAGTCG--AGA...........................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT-GCTATAGTCG--AGTTCCC.......................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT-GCTATAGTCG--AGTT..........................................................................................................................................................................................................................18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAGTCG--AGTTCCCCG.....................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-GCTATAGTCG--AGTTCCCC......................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droEug1
AACTA-G-CAC-------------------------------------------------------------------CGCA-------------AT----------------------------------------TTCTTTGACAACGTCAACCATAACAACAACAACAACCGCAACAG-TAACG-------------------------------ACAGCGCGATTAACGACGTCAT------------------------------------------------------------------------------------------------------------------------CAGCTAGCAGCGAAAACATTA------------------------------------------------------------------------ATACTTCTG-CTGCTGCGCTACCCGAAAAAGAG----AA----CAAAAACAAGAGGAAAC-GCTATAGTCG--AGTGCCGCGACCATAAGATACCCGTTA----CTGTTTTACA----------AAATTTTAAAATATTATTTTGCTAGTGGAAATTCACAAGG---------------------------CGCCACCTATTGTCAGAGGAAGTATGTTGAGTATGCTTATAGTGAC-GTCAC----------------------------------TGCCCAT-GTGAGGCCTTSizeHit CountTotal NormTotal
No Reads
droBia1
GACAA-C-AAA-------------------------------------------------------------------AATTCTAGTTTCGT-----------------TATCCTTTAACCTGGGGTAC---------------------------------------------AGATCACTTTTCG-------------------------------AT---------------TTCAGACTG---------TTGAATATAA--------------TTTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCGGA-TTGTTATATTG--------TTAA----AA----AAAAAACAA------------GCAATCG--AGTGCCTTCACTTCGAGACACCCGTTA----CTCAGCTAAC------------------------------------AAACTTAAAAATA-----------------------------------------------------------------------------------------------------TCCCATTGATATTTAGTCTGTTGTTGGCGTTSizeHit CountTotal NormTotal
No Reads
droTak1
TAACA-A-AAA----------CAAAAGCAACAG--CA-----------------------------------------------------------------------------------------------------------------------------------------ACAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGGCACCGGTGGCATTGCCGTAGTTTTGGCATCAACATAATTACTTGTTTCCACTTTTGTACTCGGCTTCCACTGTCGCAGTTGCGTTTTTATTGTGGCCCACT----------------GTATC-TAAT--TAAAAACTAGAGAGAAC-GCTATAGTCG--GGTGCCCCGACTATCAGATACCCGTTA----CTCAGCTAAA------------------------------------GGGAGTGCGAAAGAGAT-GGAGAAAA-----------------------------------------------------------AC--------------------TTTGATCCGCCGTAACTTTTTAACGAATGGTCCGATTTSizeHit CountTotal NormTotal
No Reads
droEle1
AGTTG-T-ATC--------A--C-------------------------------------------------------TTT--------------ATCTTG-----------------------TAGAC---------------------------------------------GGAACAT-TCACG-------------------------------AC---------------ATTGCGCCG---------GTAAATTTAT--------------TTTGTGCTTGCCATAAAA----------------------CCCCTTCAAAAAACTTTTG-------------------------------------------------------------------------------------------------------------------------------------CAATT--------CCAG----AA----TAAAAACAAGAGAGAAC-GCTATAGTCG--AGTTTCCCGACTATTAGATA------A----CTCAGCCAAC------------------------------------AAA-CTTCAAACAGAGCAGAGGA-----C-------------------------------------------------------------------------------TTAATAACCCTTAA----------CTTCAAAAATATASizeHit CountTotal NormTotal
No Reads
droRho1
TAAAT-CGG-----------ACAATTGTAACTA--TATTAAAATAATCATCAAAAATCAATAAAGAAATCAATATAATCT-----------------------------------TTTGCGTGGCATCCAGCAAATTTGTAT------------------------------------------------------------------------------------------------------GCATAGAAT---------------------------------GCGATAAAAACTCGCAAATATGTCT---------------GAAACTTGTG-------------------------------------------------------------------------------------------------------------------------------------CA-------------------GT----GAAAAACAAGAGAGAAC-GCTATAGTCG--AGTGCCCCGACTATCAGATACCCGTTA----CTCAGCTAAA------------------------------------GGGAGTGCGAGGGAGAT-GGAGA---------------------------------------------------------TAGAAAC--------------------TTTGATCACGCATAACTTTTTAACGAATGGTCCGATTTSizeHit CountTotal NormTotal
No Reads
droFic1
AATTT-C-AAT----------------------------------------------------------------------------------------------------------------------------------CTGTTAACTTGA-----------------------------------------------------------------------------------------------------------------ACT------------------------------------AACCGCATACAAC-----------------------------------------T--------------------------------------------------------------------------------------------------------------------------CTG---CCAAAAC----AAACAAGTGAGAAC-GCTATAGTTG--GGTGCCCCGACTATCAGTTACCAGTTAAATACAGAGCCAGA------------------------------------TGTATTGTAT-TGTGA------------TTTAAATA--------------------------------------------------AAGTTCCTGCATTGGCTTAGA----AGAG----------TTCATTGGCTTATGAGCA-TSizeHit CountTotal NormTotal
No Reads
droKik1
AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGAAAGAAC-GCCATTGTCG--AGTGCCCCGAATATGAGATACCCGGCA----CTCAAG---GCTCTATTACAAAACA-------------------------------------T-TAAACAAAGACTCAAATA--------------------------------------------------CAGCT-----------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droAna3
CTTAT-T-AAT----------------C-----AA----------------------------------------------GA---------CATTTT-----AGA---------------------------------------GACCTC----------------------------------------------------------------------------------------------------------------AA-----------------------------------------------------------------ATTGTATTACTT---GTTAGTCCCCTAACA--------------------------------------------------------------------------------------------------------------------------AAGTCCCCAAAACAAAAAAAAAACAAAGAACGGCTGAAGTCG--AGTTTCCCGACTGTATAATATCCGGTA----TTCATCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAAAAAAAACAAA...............................................................................................................................................................................................................................................19200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAACAAAAAAAAAACC.................................................................................................................................................................................................................................................19200.051010000
droBip1
TCTCCTC-TAT----------------C-----GAG------------------------------------------AGCTTCAGCTTCGC-----------------TAT-------------------------------GTC---------------------------------------------------------------------------------------------------------------------TAGTCGTGCCGCACT---------------------------CTCTGTTTATTAC-----------------------------------------A--------------------------------------------------------------------------------------------------------------------------ATAC----ACAAT----AAATTAGAAAGAACGGCTATATTCG--AGTTCCCCGACTATTTTATACACGGTA----CTCGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ATTCA-G-TTG-------------------------------------------------------------------CACT-------------GT----------------------------------------CGTTCCATTAATGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACT---------------------------------------------------------------------------------------------------------------------------------------ACA----A--------CAACAAACTAAAGA-GATGTAGTCG--AGTTTTCCGACTATTAAATACCCAGTA----CTCGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..TCA-G-TTG-------------------------------------------------------------------CACT-------------GT----------------------------------------CGTTCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGAAA-G-TTC--------G--T----T--------------------------------------------------------TAC--------ATCTTT---------TA-------------------------------ATT---------------------------------------------------------------------------------------------------------------------TATTTGTG------------------------------------CTATTTTTAA------------------------------------------C--------------------------------------------------------------------------------------------------------------------------ATTT----TTTTC----AAACGAGAAAAAAT-GCCTTAGTCG--AGGGTTCCGACTACAAAATACCCGCTT----CTCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATATT-A-ATA--------A--ATAAATAAATA--TA-----------------------------------------------------------------------------------------------------------------------------------------GTAACGA-TCGCT-------------------------------------AAATCAACG---------CT---------ACATA-----TATATATTCTGCGC------------------------------------------------------------------------GCATACTAAGC--------------------------------------------------------------------------------------------------------------------------CAGTATTCATA---CTAAAATCAGAGAGAAA----------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------CAGTT----------------------------------TTGTTTAATTTGCGGGGGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................TAACGA-TCGCT-------------------------------------AAATCAACG---------CT---------ACATA-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.45905220
.............................................................................................................................................................................................................................................................................TTCTGCGC------------------------------------------------------------------------GCATACTAAGC--------------------------------------------------------------------------------------------------------------------------C.........................................................................................................................................................................................................................................................................20200.30600060
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------TTGTTTAATTTGCGGGGGCG21200.10201001
..................................................................................................................................................................................CGA-TCGCT-------------------------------------AAATCAACG---------CT---------ACATA-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
.................................................................................................................................................................................................................................................................A-----TATATATTCTGCGC------------------------------------------------------------------------GCATAC.........................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTT----------------------------------TTGTTTAATTTGCGGGG...21200.10202000
...............................................................................................................................................................................TAACGA-TCGCT-------------------------------------AAATCAACG---------CT---------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10220000
...............................................................................................................................................................................TAACGA-TCGCT-------------------------------------AAATCAACG---------CT---------ACATA-----TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29140.07101000
...............................TA--TA-----------------------------------------------------------------------------------------------------------------------------------------GTAACGA-TCGCT-------------------------------------AAATCAACG---------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.........................................................................................................................................................................................................................................................................TATATTCTGCGC------------------------------------------------------------------------GCATACTAAGC--------------------------------------------------------------------------------------------------------------------------CAG.......................................................................................................................................................................................................................................................................26200.05101000
.........................................................................................................................................................................................................................................................................TATATTCTGCGC------------------------------------------------------------------------GCATACTAA......................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
............................................................................................................................................................................................................................................................................ATTCTGCGC------------------------------------------------------------------------GCATACTAAGC--------------------------------------------------------------------------------------------------------------------------C.........................................................................................................................................................................................................................................................................21200.05101000
...................................TA-----------------------------------------------------------------------------------------------------------------------------------------GTAACGA-TCGCT-------------------------------------AAATCAACG---------CT---------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
.................................................................................................................................................................................ACGA-TCGCT-------------------------------------AAATCAACG---------CT---------ACATA-----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
..........................................................................................................................................................................................................................................................................ATATTCTGCGC------------------------------------------------------------------------GCATACTAAGC--------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................22200.05100001
........................................................................................................................................................................................................................................................................ATATATTCTGCGC------------------------------------------------------------------------GCATACT........................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
..........................ATAAATA--TA-----------------------------------------------------------------------------------------------------------------------------------------GTAACGA-TCGCT-------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................AACGA-TCGCT-------------------------------------AAATCAACG---------CT---------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------CAGTT----------------------------------TTGTTTAATTTGCGG.....21200.05100010
droVir3
TCTTA-T-TCC--------A--A----C-----A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAT--------------------------------------------------------------------------------------------------------------------------AAAT----TAATA----AAACAAGTAAGAGT---TCTAGTCGGGAAGCTCCCGACTAGGGGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
TCTTA-T-TCC--------A--A----C-----A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAT--------------------------------------------------------------------------------------------------------------------------AAAT----T.................................................................................................................................................................................................................................................................24200.102002000000000000000000000000000000000000000000000000000000000000
droMoj3
ACTGC-AGCAG---------GTGGCAACGAAAA--CAGCGCTTATT--------------------------------------------------------------------------------------------------------------------------------GTAATAA-GCACGAGTCAAAGTGCAATTTCTTTACAAACTTCCCAC---------------AGTACATGG---------ATAGATTAAG--------------AGGGATGTT--------------------------------------AGAA--------TAGTTT---GTCAATTCCTTAAAA--------------------------------------------------------------------------------------------------------------------------AAAT----CTATT----AAACAAGTAAGAAG-GCTCTAGTCGA-GACTGCTCGACTAGGAGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-GACTGCTCGACTAGGAGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------26200.255000050
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GCTCTAGTCGA-GACTGCTCGA....................................................................................................................................................................................................................22200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTCGACTAGGAGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------22200.051100000
droGri2
TTGTT-T-ACC--------A--A----C-----AAGAAGTTTTGCG--------------------------------------------------------------------------------------------------------------------------------GCAATGG-ATGTGGTTTGTGGTTTAACTGCTTTTATGGTAACA---------------------------------------------------------CAAA--------------------------TATATATATATATA-----------------------------------------T--------------------------------------------------------------------------------------------------------------------------ATAC----AA----TAAAAACAAGTAAGAAC-AACTGCTTCA--GGCTCCTCGAACATTACATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:38 PM