ID:

dya_857

 Coordinate:

3L:22281556-22281706 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.2 -21.1 -21.0

Flybase annnotation

CDS [Dyak\GE22597-cds]; exon [dyak_GLEANR_6259:6]; intron [Dyak\GE22597-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
Hoyak2DNAhAT-Ac+
mature
  1. dya_857  3L:22281591-22281611 +
  2. 2R:885620-885640 +
  3. 2R:1361909-1361929 +
  4. 3R:102880-102900 +
  5. 3R:4641684-4641704 +
  6. v2_chrUn_4206:267896-267916 +
  7. v2_chrUn_2623:1164-1184 +
  8. v2_chrUn_2522:227-247 +
  9. v2_chrUn_5064:7903-7923 +
  10. v2_chrUn_5709:76677-76697 +
  11. v2_chr2h_random_004:93615-93635 +
  12. v2_chr2h_random_004:355322-355342 +
  13. v2_chrUn_6995:96408-96428 +
  14. chr2h:521336-521356 +
  15. v2_chr2L_random_030:31050-31070 +
  16. v2_chr2h_random_021:53946-53966 +
  17. v2_chr3L_random_300:4314-4334 +
  18. v2_chrUn_002:105600-105620 +
  19. v2_chrUn_003:250451-250471 +
  20. v2_chrUn_293:25858-25878 +
  21. 3L:22105586-22105606 -
  22. 3L:23868114-23868134 -
  23. 2L:20896875-20896895 -
  24. 2R:191113-191133 -
  25. 2R:987786-987806 -
  26. 2R:1202632-1202652 -
  27. 3R:2815807-2815827 -
  28. 3R:2822059-2822079 -
  29. v2_chrUn_3970:125-145 -
  30. v2_chrUn_943:7768-7788 -
  31. v2_chrUn_6308:669-689 -
  32. v2_chrUn_6825:9260-9280 -
  33. v2_chr2h_random_004:952914-952934 -
  34. chr3h:97415-97435 -
  35. v2_chr3L_random_292:5811-5831 -
  36. v2_chr3h_random_002:203175-203195 -
  37. v2_chrUn_001:217855-217875 -
  38. v2_chrUn_001:368721-368741 -
  39. v2_chrUn_273:124-144 -
  40. v2_chrUn_500:1484-1504 -
  41. 2L:19172571-19172591 +
  42. 2L:20866571-20866591 +
  43. 2R:653775-653795 +
  44. 2R:3227661-3227681 +
  45. 3R:2103279-2103299 +
  46. 3R:4579814-4579834 +
  47. v2_chrUn_975:24431-24451 +
  48. v2_chrUn_2412:6-26 +
  49. v2_chrUn_4989:150784-150804 +
  50. v2_chrUn_4989:158581-158601 +
  51. v2_chrUn_6887:14436-14456 +
  52. v2_chr2h_random_004:189049-189069 +
  53. v2_chr2L_random_028:332916-332936 +
  54. v2_chr2L_random_028:525224-525244 +
  55. v2_chr2L_random_028:654406-654426 +
  56. v2_chr2L_random_028:1258094-1258114 +
  57. v2_chr2h_random_021:55906-55926 +
  58. v2_chr3L_random_067:5524-5544 +
  59. v2_chrX_random_022:113175-113195 +
  60. v2_chrUh_007:29773-29793 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACTCTAACGCCCATAAACCACGCAAAGCTGCCACGTTCACACTTCTTGATGTATTTTTTAAAACATTTTTTAATGGTTTATTAGTCGGGGAACTCGACTATAGCGTTCTCTCTTGTTTTTTTGCATACTAGCATATTTTCTTCTTCAGAGATTTCTAAGTGTGAATGTAGACTGATTCCTCATCCTTCCCTCCTTCGGCAGCCTATATCATTCGCACCATCCGCTGTACCCGATCCCGATACCACACGTAC
**************************************************.........((((((......((((......((((((((...))))))))...))))......))))))....((((((((.....(((((.....)))))...)).))))))........((((...................))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V058
head
...........................................................................................................................................................................................................TATATCATACGCACCATCCGCTGTACCC.................... 28 1 2 0.50 1 1 0
.....................................................................................CGGGGAACTCGACTATAGCGT................................................................................................................................................. 21 0 20 0.20 4 4 0
...................................................................................................................................................................................................................TCGCACCATTCGCTGTCCGC.................... 20 3 6 0.17 1 0 1
..............................................................................................CGACTATAGCGTTCTCTCTTGTTT..................................................................................................................................... 24 0 20 0.15 3 3 0
......................CAAAGCTGCCACGTTCACACT................................................................................................................................................................................................................ 21 0 7 0.14 1 1 0

Anti-sense strand reads

TGAGATTGCGGGTATTTGGTGCGTTTCGACGGTGCAAGTGTGAAGAACTACATAAAAAATTTTGTAAAAAATTACCAAATAATCAGCCCCTTGAGCTGATATCGCAAGAGAGAACAAAAAAACGTATGATCGTATAAAAGAAGAAGTCTCTAAAGATTCACACTTACATCTGACTAAGGAGTAGGAAGGGAGGAAGCCGTCGGATATAGTAAGCGTGGTAGGCGACATGGGCTAGGGCTATGGTGTGCATG
**************************************************.........((((((......((((......((((((((...))))))))...))))......))))))....((((((((.....(((((.....)))))...)).))))))........((((...................))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V058
head
 M043
female body
 V120
male body
....................................................................................................................................................................................GGAGGCAGGGAGGAAGCCG.................................................... 19 2 1 1.00 1 1 0 0
.......................................................................................................................................................................................................TCGGAGACAGTAAGCGTGCTA............................... 21 3 3 0.33 1 1 0 0
....................................................................................................................................................................................GTAGCAAGGGTGGAATCCG.................................................... 19 3 7 0.14 1 1 0 0
.......................................................................................................................................................................................................TCGGAGATAGTGGGCGTGGT................................ 20 3 9 0.11 1 1 0 0
..............................................................................................................................................................................................................................CGAGATGGGCTAGGGAT............ 17 2 13 0.08 1 1 0 0
TGAGATTGCGGGTATTTGG........................................................................................................................................................................................................................................ 19 0 20 0.05 1 0 0 1
................................................................................AAAAAGCCCCTTGAGCTGATAT..................................................................................................................................................... 22 2 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3L:22281506-22281756 + dya_857 ACTCTAACGCCC-----ATAAACCA------CGCAAAGCTGCCACGTTCACACTTCTTGA-TGTATTTTT---------------------------------TAAA------------------------ACATTT----------TTTAATGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAGTCGGGGA-ACTCGACTATAGC-GTT--CTCTC---------------------------------------TTGTTTTTT--T-GCATACTAGC--AT--------------------ATTTTCTTCT----------TC----A--GAGATTTCTA-------------------------------------AGTGTGAAT-GTAGACTGATTCCTCA---------------------------------------------------------TC----------------------------------------------------------------------------------------------------------------------------------CTTCCCTCCTTCGGCAGCCT-----ATATCATTCGCACCATCCGCTGTACCCGATCCCGATAC-CACACGTAC
droEre2 scaffold_4929:26440289-26440479 - ACTCTAACGCCC-----ACAAACCG------CTCATAACTGCCACGCCCACATCATTGAA-AA------------------------A-------TACTTTGC--------------------------------TA-----------------------GTTTTTAATTTTGTTATTAGTCTTGTAAATTT--------------------------GTAACGATACCCTTATTTTTT-TTTTTTCGTTTTATTTCTTTTTTTCCCTATTACGACAGATATTCCAGTAAT---GTTGAAATTTC----------------------------------------------------------------------------------------------------------------TCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACCTCC
droSec2 scaffold_41:170830-171157 - CTGCTTCCACCT-----GCAAAATA------CGCAAAACGGTCACGCTCACACTTTTAAA-CA------------------------A-------TTTT---------------------------------------------------------------------------------------------------------------------------------------------TAA--ATTTGTTCTCATTTTATTCCCCAATATCTATCGATATCCCAGAAAAATTACTCAA--TTCGCGTTCGCATTCACACTATCTGAGTAACGGGTATCTGATAGTCGGGGA-AATCGACTATAGC-ATATTCTCTC---------------------------------------TAGTGTTGA--TATAAGATAA----------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGAGGCGAACATTTCTTTCCAAA-ACTTAAATTCGAATATCGGGTGACT-------------ACATCCTCCGACAACAAAAGAACTGTGGTTCGTCACTTCCGCGATACCCTCTTTTGCCAC-CACCAGCAC
droSim2 4:342205-342388 + ACTCTAACGCCC-----ACAAACCG------CCCAAAACTGCCACGCCCACGCTTTTGAA-AA------------------------A-------TATTTTGT--------------------------------TA-----------------------TTTTTTGGTTTT-----------------------------TGCCCAAAA-C--GGTCGCGACCATCCCTTTGAACAACTTAA--GACTTTTCTTATTATATTCCCCAATGCC--------------AAAAACTGTTGAAATTTC----------------------------------------------------------------------------------------------------------------TCGTTCTCT--T-TTCC----------------------------------------------------------------------------------------------------------------CCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CTG---------A-------------C------T--------------------------------------------------------------------------
dm3 chr2RHet:2899441-2899665 - ACTCTAACAACC---GCACAAACCG------CCCAAAACTGCCACACCTACATTTTTGAA-ATTTTTTTTTGATATTTTTTTCAT-------------------------------------------------------------------AATT-----------------TTATTAGCTGTGTAAATTTTTATCGACCTGCCAAAAAACTTTACCGCGCCCACATTTTTGAACCATTT--------------------------------------------------------------------------------------------------------------------------TTGG-ATATTTTTCA---------------------------------------TAGTTT---------------------------------------------------------------------------------------TATAAGTCG-----------------------TGTAAAT-TTCTATCGATTTTTAATTTTTT--------------------------------------------------------------------------------------------------------------------CTCATTT-TATAC---------------------------------------------CCCATATC--------------------------------------------------------------------------
droEug1 scf7180000408063:3454-3635 + CTTTCTCCGACA-----GTAGGTGG------CGCTTGG--GTAATTTCCACTAACAAAAT-GA------------------------A-------TATTTTAT--------------------------------AA-----------------------TT----------------------------------------GTGTAAAA--------------------------------------------------------------------------------------------------------------------CAGTAACGGGTATCTTATAGTCGCGGC-ACTCGACTATACC-GTT--TCCTA---------------------------------------TTGTTTATT--T-TCATCTCA----T----------------------TTTTTTTCT------------------------------------------------------------------AGATTATAA-TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------TGTTTATAATGTGT--------------------------------------------------------------------------GCTGCCTCC
droBia1 scf7180000297427:45800-46005 - ACTCTAAAGCCC-----AAAAACGG------CTTAAAC-GCCTA----AATATGCCTG-------------------------CCGCCCACATAGCATCTAA-TAAAGTATCCGTTAGGTGACGCCCTAAAATATCG----------CTT-----TGCTGGTTATATATCT-----------------------C-----------------------------------------------------------------------------------------------------------------------------------------------CCAGATAGTCGAGGC-ACTCGACTGAAGC-GTT--CTTCC---------------------------------------TTGTTATTA--CTTGATATTACT--AT--------------------GTTATCCTTT-------T----------------TTCTC-------------------------------------AGTCTAAAT-TTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------A-------------T------T--------------------------------------------------------------------------
droTak1 scf7180000414247:20844-21045 - ACTCTGTCGTCC-----ACAATCAC------TTTAAGG-GG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------AGGTAAATT-GTCGGGTTCCACTTCTATTGTGTTGTCTTCGATTTCTAAGGGCTCAGTGAACCCAAAAGAATCTTCTTTGTCTTCTTCTAATAAAATGTCAGCCAACGATTTGTCGAAGTCTGAGTTTTGAGGGACCTTAATTTTCCGATCGTTCCTATGGC--------------------------------------------------------------------AG-----------------------------------------------CTATATGAT
droEle1 scf7180000491265:332062-332219 + TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGGGC-ATTCGACTATAAC-TTT--CTTCT---------------------------------------TGGTTGGGTTTCATATTTTAA--------------------------ATATTTTATTTTGAACTTTTCTAAGCACTAA---TTTCT-------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------T------TGCATTTCTGCACCAGCAGGCT-----GAGCCGATCGGAC---CCACTCGCCCCTCCTCGGCGATGTTTGCGTAC
droRho1 scf7180000769206:1715-1865 - ACTCTAACGCCC-----AAAAACCC------ATTAAAC-GCTTAAG-------------A-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTAACGGGTATCTAATAGTCGAGGC-ACTCGACTATAGC-ATT--CTCTC---------------------------------------TTGTTTTTA--TCTAGCATAA----------------------------TT-----CTTGCTCTTTTGT----A--AGCATTTTCT-------------------------------------AGTCTAAAT-TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------CTTTCTTAT
droFic1 scf7180000453945:112017-112176 + TTTTGCAAAACA-----ACAGGTCG------TTCT-----TCAATATTCACAG-------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAAAGAATTCTAGT----------------------------------------------TTCAAATGACC-------------------AATCAAACT-TTGGAATGCTTTCTAT----------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------CTCTCCCCCACCGCCAGCAT-----ACATCATTCGTACTATCCGCTGCACCCGCTCCCGCTAC-CACACCTAC
droKik1 scf7180000302441:2105436-2105557 - TATTAG----------------------------------------TTTAGA-----------------------------------------------------------------------------------TT------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTGAGTTTTCTATTTAATATATTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTCATCT---------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------CTCTTATCCATCGATAGCCT-----ATATCATTCGCACCATTCGTTGCACCCGCTCCCGTTAC-CACATCTAC
droAna3 scaffold_13082:2027376-2027476 - CTTACCACCCTC-----AAAAATGA------CATGTTTCTGTAGCGTTAACTTAA----A--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TATTTTGAAAAAGTTTTGAT----------------------------------------------GTTAAACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTATAGC---------------------------------------GGATTCTCTTATT--------------------------------------------------------------------------
droBip1 scf7180000396710:151586-151727 - CCTCTC----CCACAA-AT-CGTGG------CGCCAGTACGGAATGTTTGGAACTTTG-ACT--ATTTTA---------------------------------TAAA------------------------ATATAG----------TCT----AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGG--AAAATATAGTCGAGAA-ACTTGACTAAAGCCGTC--CTTTC---------------------------------------TTGTTTTTT--A-TTATATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TA------------------------CCCTTGCT--------------------------------------------------------------------------
dp5 Unknown_singleton_1794:3310-3446 - ACTTCCGCCTCC-----ACAAAAAG------CGAAAATCTGTGGCATCCACAATTTCGAC-GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCTGAACAAGAT-CG---TATAATTATTATAGCCAGAATCAAAAAAACAATTTCATTCTTTCTCGCTCTGT--C-TCTC----------------------------------------------------------------------------------------------------------------TCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CA------------------------C------A--------------------------------------------------------------------------
droPer2 scaffold_94:84658-84797 + ACTTCCACCCCC-----ACAAAGGG------CGAAAATCTGTGGCATCCACAATTTCAAA-GAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAACCCAGATCGTATAAT--------------------------------TATTATAGCCAGAATCAATAAAACAATTTCATTCTTTCTCGCTCTGT--T-TCTT----------------------------------------------------------------------------------------------------------------TCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CA------------------------C------------------------------------------------------------------------ACTGGTTTC
droWil2 scf2_1100000004909:3012359-3012455 - TCTTTTGTTTT-----------------------------TTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACATTTTT--------------------GTTTTTTTTT----------TT----A--AATTTTTTTGGCTTTGA-----GTATTTCGTTTCTTCCCTCTCTCTCTCTCCCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-TTG---------C-------------C------T--------------------------------------------------------------------------
droVir3 scaffold_13324:2542741-2542869 + CGAT-AACGTAC-----TCCGTACT-----------------------------TCT--AAA--ATAGAA---------------------------------TAGA------------------------AGAGGG------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACGGTATCCCCTAGTCGGGAGTTCCCGACTAAAAC-CT---CTTAC---------------------------------------TTGTTTTTT--T-CGGTACAAGTGAC----------------------CTTTTTTCT----------TC----ACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC
droMoj3 scaffold_6359:2779443-2779625 + ATTGGAATACTA-----TTAGACCTGGAGACTTCAGATTTACTGTGTATATACATATG-------------------------ATGAATACA-AACATTTTGT--------------------------------ATTTTACAGATTTTGGATGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGGTATCTCCTAGTCGAGCAGTCTCGACTGGAGC-CTT--CTTAC---------------------------------------TTGTTTTAT--T-TCATT-------------------------------TCTCTTGT----------TC------------------------------------------------------ATATTATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-A--------------------------------------------------------------------------------------------------TGTGCATGT
droGri2 scaffold_15252:12631949-12632061 + TCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGC-ATT--TTTAC---------------------------------------TTGTTTTTTTGT-TGGCTTCAGCAAT-TT----------------------------------------------------------------TTTGAGGCACG-------------------ACTTTGATT-CTCGACTGTTTTTTACATTCTG--------------------------------------------------------------------------------------------------------------------CGCTCTT-CATTCC-----------TTAT-ATATC---------A-------------T------T--------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
ACTCTAACGCCC-----ATAAACCA------CGCAAAGCTGCCACGTTCACACTTCTTGA-TGTATTTTT---------------------------------TAAA------------------------ACATTT----------TTTAATGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAGTCGGGGA-ACTCGACTATAGC-GTT--CTCTC---------------------------------------TTGTTTTTT--T-GCATACTAGC--AT--------------------ATTTTCTTCT----------TC----A--GAGATTTCTA-------------------------------------AGTGTGAAT-GTAGACTGATTCCTCA---------------------------------------------------------TC----------------------------------------------------------------------------------------------------------------------------------CTTCCCTCCTTCGGCAGCCT-----ATATCATTCGCACCATCCGCTGTACCCGATCCCGATAC-CACACGTACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................CGGGGA-ACTCGACTATAGC-GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20404000000000
.....................................................................................................................................................................................................................................................................................................................................................................CGACTATAGC-GTT--CTCTC---------------------------------------TTGTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................24200.15303000000000
.................................CAAAGCTGCCACGTTCACACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.14101000000000
droEre2
ACTCTAACGCCC-----ACAAACCG------CTCATAACTGCCACGCCCACATCATTGAA-AA------------------------A-------TACTTTGC--------------------------------TA-----------------------GTTTTTAATTTTGTTATTAGTCTTGTAAATTT--------------------------GTAACGATACCCTTATTTTTT-TTTTTTCGTTTTATTTCTTTTTTTCCCTATTACGACAGATATTCCAGTAAT---GTTGAAATTTC----------------------------------------------------------------------------------------------------------------TCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACCTCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droSec2
CTGCTTCCACCT-----GCAAAATA------CGCAAAACGGTCACGCTCACACTTTTAAA-CA------------------------A-------TTTT---------------------------------------------------------------------------------------------------------------------------------------------TAA--ATTTGTTCTCATTTTATTCCCCAATATCTATCGATATCCCAGAAAAATTACTCAA--TTCGCGTTCGCATTCACACTATCTGAGTAACGGGTATCTGATAGTCGGGGA-AATCGACTATAGC-ATATTCTCTC---------------------------------------TAGTGTTGA--TATAAGATAA----------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGAGGCGAACATTTCTTTCCAAA-ACTTAAATTCGAATATCGGGTGACT-------------ACATCCTCCGACAACAAAAGAACTGTGGTTCGTCACTTCCGCGATACCCTCTTTTGCCAC-CACCAGCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................ATATCTATCGATATCCCAGAAAAATTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCCGACAACAAAAGAACTGTGGT.........................................2611.0010010
..........................................................................................................................................................................................................................................................................................................................TTCACACTATCTGAGTAACGGGTATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.7533000
..........................................................................................................................................................................................................................................................................................................................TTCACACTATCTGAGTAACGGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2511000
.........................................................................................................................................................................................................................................................................................................................ATTCACACTATCTGAGTAACGGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.2511000
...........................................................................................................................................................................................................................................................................................................................TCACACTATCTGAGTAACGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2511000
....................................................................................................................................................................................................................................................................................................................TTCGCATTCACACTATCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1411000
..........................................................................................................................................................................................................................................................................................................................TTCACACTATCTGAGTAACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410010
......................................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTGATAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000
.......................................................................................................................................................................................................................................................................................................................................AGTAACGGGTATCTGATAGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000
..................................................................................................................................................................................................................................................................TTATTCCCCAATATCTATCGATATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0511000
droSim2
ACTCTAACGCCC-----ACAAACCG------CCCAAAACTGCCACGCCCACGCTTTTGAA-AA------------------------A-------TATTTTGT--------------------------------TA-----------------------TTTTTTGGTTTT-----------------------------TGCCCAAAA-C--GGTCGCGACCATCCCTTTGAACAACTTAA--GACTTTTCTTATTATATTCCCCAATGCC--------------AAAAACTGTTGAAATTTC----------------------------------------------------------------------------------------------------------------TCGTTCTCT--T-TTCC----------------------------------------------------------------------------------------------------------------CCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CTG---------A-------------C------T--------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................TGCC--------------AAAAACTGTTGAAATTTC----------------------------------------------------------------------------------------------------------------TCG........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.....................................................................................................................................................................................................................................TTTGAACAACTTAA--GACTTTTCTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
...................................................................................................................................................................................................................................................................TATTCCCCAATGCC--------------AAAAACTGTTGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
.....................................................................................................................................................................................................................................................................TTCCCCAATGCC--------------AAAAACTGTTGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................................................................................................................................................................................TCCCTTTGAACAACTTAA--GACTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
...................................................................................................................................................................................................................................CCTTTGAACAACTTAA--GACTTTTCTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
..................................................................................................................................................................TTTTGGTTTT-----------------------------TGCCCAAAA-C--GGTCGCGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
....................................................CTTTTGAA-AA------------------------A-------TATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.15300000020001000000
dm3
ACTCTAACAACC---GCACAAACCG------CCCAAAACTGCCACACCTACATTTTTGAA-ATTTTTTTTTGATATTTTTTTCAT-------------------------------------------------------------------AATT-----------------TTATTAGCTGTGTAAATTTTTATCGACCTGCCAAAAAACTTTACCGCGCCCACATTTTTGAACCATTT--------------------------------------------------------------------------------------------------------------------------TTGG-ATATTTTTCA---------------------------------------TAGTTT---------------------------------------------------------------------------------------TATAAGTCG-----------------------TGTAAAT-TTCTATCGATTTTTAATTTTTT--------------------------------------------------------------------------------------------------------------------CTCATTT-TATAC---------------------------------------------CCCATATC--------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------TATAAGTCG-----------------------TGTAAAT-TTCTATCGA.............................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000200100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-----------------------TGTAAAT-TTCTATCGA.............................................................................................................................................................................................................................................................................21202.70540000000000000000000000000000000000000020101010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100021010300000000000000000000000000000000000000100000000000000000000000410000000000000000000000000000000001000000000000000000000100050000000000000000437000000080000000000000000210000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGTCG-----------------------TGTAAAT-TTCTATCGA.............................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTCG-----------------------TGTAAAT-TTCTATCGA.............................................................................................................................................................................................................................................................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
..........................................................AA-ATTTTTTTTTGATATTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTCG-----------------------TGTAAAT-TTCTATCGATT...........................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCG-----------------------TGTAAAT-TTCTATCGATT...........................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTTTCAT-------------------------------------------------------------------AATT-----------------TTATTAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-----------------------TGTAAAT-TTCTATCGATT...........................................................................................................................................................................................................................................................................23190.2140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000
....................AACCG------CCCAAAACTGCCACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACCG------CCCAAAACTGCCACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TTTTTTCAT-------------------------------------------------------------------AATT-----------------TTATTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-----------------------TGTAAAT-TTCTATCGAT............................................................................................................................................................................................................................................................................22190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................GCCCACATTTTTGAACCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-----------------------TGTAAAT-TTCTATCGATTT..........................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTTTTT--------------------------------------------------------------------------------------------------------------------CTCATTT-TA..................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-----------------------TGTAAAT-TTCTATCGATTTTC........................................................................................................................................................................................................................................................................26200.0510000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CCCACATTTTTGAACCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-----------------------TGTAAAT-TTCTATCGATA...........................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-----------------------TGTAAAT-TTCTATCGC.............................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droEug1
CTTTCTCCGACA-----GTAGGTGG------CGCTTGG--GTAATTTCCACTAACAAAAT-GA------------------------A-------TATTTTAT--------------------------------AA-----------------------TT----------------------------------------GTGTAAAA--------------------------------------------------------------------------------------------------------------------CAGTAACGGGTATCTTATAGTCGCGGC-ACTCGACTATACC-GTT--TCCTA---------------------------------------TTGTTTATT--T-TCATCTCA----T----------------------TTTTTTTCT------------------------------------------------------------------AGATTATAA-TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------TGTTTATAATGTGT--------------------------------------------------------------------------GCTGCCTCCSizeHit CountTotal NormTotal
No Reads
droBia1
ACTCTAAAGCCC-----AAAAACGG------CTTAAAC-GCCTA----AATATGCCTG-------------------------CCGCCCACATAGCATCTAA-TAAAGTATCCGTTAGGTGACGCCCTAAAATATCG----------CTT-----TGCTGGTTATATATCT-----------------------C-----------------------------------------------------------------------------------------------------------------------------------------------CCAGATAGTCGAGGC-ACTCGACTGAAGC-GTT--CTTCC---------------------------------------TTGTTATTA--CTTGATATTACT--AT--------------------GTTATCCTTT-------T----------------TTCTC-------------------------------------AGTCTAAAT-TTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------A-------------T------T--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACTCTGTCGTCC-----ACAATCAC------TTTAAGG-GG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------AGGTAAATT-GTCGGGTTCCACTTCTATTGTGTTGTCTTCGATTTCTAAGGGCTCAGTGAACCCAAAAGAATCTTCTTTGTCTTCTTCTAATAAAATGTCAGCCAACGATTTGTCGAAGTCTGAGTTTTGAGGGACCTTAATTTTCCGATCGTTCCTATGGC--------------------------------------------------------------------AG-----------------------------------------------CTATATGATSizeHit CountTotal NormTotal
No Reads
droEle1
TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGGGC-ATTCGACTATAAC-TTT--CTTCT---------------------------------------TGGTTGGGTTTCATATTTTAA--------------------------ATATTTTATTTTGAACTTTTCTAAGCACTAA---TTTCT-------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------T------TGCATTTCTGCACCAGCAGGCT-----GAGCCGATCGGAC---CCACTCGCCCCTCCTCGGCGATGTTTGCGTACSizeHit CountTotal NormTotal
No Reads
droRho1
ACTCTAACGCCC-----AAAAACCC------ATTAAAC-GCTTAAG-------------A-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGTAACGGGTATCTAATAGTCGAGGC-ACTCGACTATAGC-ATT--CTCTC---------------------------------------TTGTTTTTA--TCTAGCATAA----------------------------TT-----CTTGCTCTTTTGT----A--AGCATTTTCT-------------------------------------AGTCTAAAT-TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------CTTTCTTATSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTGCAAAACA-----ACAGGTCG------TTCT-----TCAATATTCACAG-------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAAAGAATTCTAGT----------------------------------------------TTCAAATGACC-------------------AATCAAACT-TTGGAATGCTTTCTAT----------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------CTCTCCCCCACCGCCAGCAT-----ACATCATTCGTACTATCCGCTGCACCCGCTCCCGCTAC-CACACCTACSizeHit CountTotal NormTotal
No Reads
droKik1
TATTAG----------------------------------------TTTAGA-----------------------------------------------------------------------------------TT------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTGAGTTTTCTATTTAATATATTTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTCATCT---------------------------------------------------------TA----------------------------------------------------------------------------------------------------------------------------------CTCTTATCCATCGATAGCCT-----ATATCATTCGCACCATTCGTTGCACCCGCTCCCGTTAC-CACATCTACSizeHit CountTotal NormTotal
No Reads
droAna3
CTTACCACCCTC-----AAAAATGA------CATGTTTCTGTAGCGTTAACTTAA----A--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TATTTTGAAAAAGTTTTGAT----------------------------------------------GTTAAACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTATAGC---------------------------------------GGATTCTCTTATT--------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CCTCTC----CCACAA-AT-CGTGG------CGCCAGTACGGAATGTTTGGAACTTTG-ACT--ATTTTA---------------------------------TAAA------------------------ATATAG----------TCT----AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGG--AAAATATAGTCGAGAA-ACTTGACTAAAGCCGTC--CTTTC---------------------------------------TTGTTTTTT--A-TTATATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TA------------------------CCCTTGCT--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACTTCCGCCTCC-----ACAAAAAG------CGAAAATCTGTGGCATCCACAATTTCGAC-GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCTGAACAAGAT-CG---TATAATTATTATAGCCAGAATCAAAAAAACAATTTCATTCTTTCTCGCTCTGT--C-TCTC----------------------------------------------------------------------------------------------------------------TCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CA------------------------C------A--------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................TCGAC-GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCTGAACAAGAT-CG---T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000400
.......................................................TCGAC-GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
......................................CTGTGGCATCCACAATTTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.4590900000000
..................CAAAAAG------CGAAAATCTGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000010
.......................................................................................................................................................................................................................................................................................................................................................................................TAATTATTATAGCCAGAATCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2370.1410100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGCTCTGT--C-TCTC----------------------------------------------------------------------------------------------------------------TCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CA------------------------C------...........................................................................25200.1020020000000
..........................................GGCATCCACAATTTCGAC-G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
......................AAG------CGAAAATCTGTGGCATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.0810100000000
...............................CGAAAATCTGTGGCATCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000010
................................................................................................................................................................................................................................................................................................................................................................................CG---TATAATTATTATAGCCAGAATCA................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
droPer2
ACTTCCACCCCC-----ACAAAGGG------CGAAAATCTGTGGCATCCACAATTTCAAA-GAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAACCCAGATCGTATAAT--------------------------------TATTATAGCCAGAATCAATAAAACAATTTCATTCTTTCTCGCTCTGT--T-TCTT----------------------------------------------------------------------------------------------------------------TCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CA------------------------C------------------------------------------------------------------------ACTGGTTTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................AAAGGG------CGAAAATCTGTGGCATCCACAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.153300000
.............................................................................................................................................................................................................................................................................................................................................................................................................TAAAACAATTTCATTCTTTCTCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................25160.061010000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTCTTTCTCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
.................................................................................................................................................................................................................................................................................................................................................ATCGTATAAT--------------------------------TATTATAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.............................................................................................................................................................................................................................................................................................................................................CCAGATCGTATAAT--------------------------------TATTATAGCCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000001
droWil2
TCTTTTGTTTT-----------------------------TTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACATTTTT--------------------GTTTTTTTTT----------TT----A--AATTTTTTTGGCTTTGA-----GTATTTCGTTTCTTCCCTCTCTCTCTCTCCCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-TTG---------C-------------C------T--------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CGAT-AACGTAC-----TCCGTACT-----------------------------TCT--AAA--ATAGAA---------------------------------TAGA------------------------AGAGGG------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACGGTATCCCCTAGTCGGGAGTTCCCGACTAAAAC-CT---CTTAC---------------------------------------TTGTTTTTT--T-CGGTACAAGTGAC----------------------CTTTTTTCT----------TC----ACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................ACTAAAAC-CT---CTTAC---------------------------------------TTGTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
ATTGGAATACTA-----TTAGACCTGGAGACTTCAGATTTACTGTGTATATACATATG-------------------------ATGAATACA-AACATTTTGT--------------------------------ATTTTACAGATTTTGGATGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGGTATCTCCTAGTCGAGCAGTCTCGACTGGAGC-CTT--CTTAC---------------------------------------TTGTTTTAT--T-TCATT-------------------------------TCTCTTGT----------TC------------------------------------------------------ATATTATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-A--------------------------------------------------------------------------------------------------TGTGCATGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................TAGACCTGGAGACTTCAGATTTACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.5010900010
..................TAGACCTGGAGACTTCAGATTTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.459600030
...................................................................................................................................................................................................................................................................................................................................................................CTCGACTGGAGC-CTT--CTTAC---------------------------------------TTGTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................26200.408800000
..................TAGACCTGGAGACTTCAGATTTACTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.153000030
..................TAGACCTGGAGACTTCAGATTTACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153300000
.........................GGAGACTTCAGATTTACTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102110000
..................TAGACCTGGAGACTTCAGATTTACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102000011
..........................................................................................................................................................................................................................................................................................................................................................TCGAGCAGTCTCGACTGGAGC-CTT--C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
..........................................................................................................................................................................................................................................................................................................................................................TCGAGCAGTCTCGACTGGAGC-CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
.......TACTA-----TTAGACCTGGAGACTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.071100000
....................GACCTGGAGACTTCAGATTTACTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...................AGACCTGGAGACTTCAGATTTACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
..................TAGACCTGGAGACTTCAGATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
................................................................................................................................................................................................................................................................................................................................................TATCTCCTAGTCGAGCAGTCTCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
.......................CTGGAGACTTCAGATTTACTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................GGAGACTTCAGATTTACTGTGTATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..................TAGACCTGGAGACTTCAGATTTACTGTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
....................................................................................................................................................................................................................................................................................................................................................................TCGACTGGAGC-CTT--CTTAC---------------------------------------TTGTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
..................TAGACCTGGAGACTTCAGATTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
droGri2
TCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAGC-ATT--TTTAC---------------------------------------TTGTTTTTTTGT-TGGCTTCAGCAAT-TT----------------------------------------------------------------TTTGAGGCACG-------------------ACTTTGATT-CTCGACTGTTTTTTACATTCTG--------------------------------------------------------------------------------------------------------------------CGCTCTT-CATTCC-----------TTAT-ATATC---------A-------------T------T--------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:28 PM