dya_856

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATCTCGTTTCGCTGGTGGGAGAACTTCGCCAACACTCACGAGGCCATCGGTATGTGCTTGCTCAATGACTATTTCCCGAAAATACGTTTATAGTTATCTACTCGTGCTAGGTCCTCGTGGTATTCAAAGTCGCTTTATAAGATATCACTCAACGTCTTTTAAACACATAGGTTTAGTAATAACAATTATAATGGCTAGTTAATAATTCAAAGTTAGAAGAAATATTTGCAAATCCATTACGTCCGAGATT ************************************************.................((((.....(((.........((((((((.........(((((((.(((.(((((.((.((((.((....................)).)))).)))).))))))))))))).....)))))))))))..))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	V120 male body	V052 head
..............................CAACACTCACGAGGCCATCGC........................................................................................................................................................................................................	21	1	2	0.50	1	0	1	0
......GTTTCGCTGGTGGGAGAAC..................................................................................................................................................................................................................................	19	0	2	0.50	1	1	0	0
........................CTTCGCCAACACTCACGAGG...............................................................................................................................................................................................................	20	0	2	0.50	1	1	0	0
..................................................................................................................................................................AACACAGAGGCTTAGTAATGA....................................................................	21	3	4	0.25	1	0	1	0
.........................................CGGCCATCGGTGGGTGCTT...............................................................................................................................................................................................	19	3	20	0.05	1	0	0	1
............................................................................................................................GCAAGATCGCTTTATAAGAT...........................................................................................................	20	3	20	0.05	1	0	1	0

GTAGAGCAAAGCGACCACCCTCTTGAAGCGGTTGTGAGTGCTCCGGTAGCCATACACGAACGAGTTACTGATAAAGGGCTTTTATGCAAATATCAATAGATGAGCACGATCCAGGAGCACCATAAGTTTCAGCGAAATATTCTATAGTGAGTTGCAGAAAATTTGTGTATCCAAATCATTATTGTTAATATTACCGATCAATTATTAAGTTTCAATCTTCTTTATAAACGTTTAGGTAATGCAGGCTCTAA ************************************************.................((((.....(((.........((((((((.........(((((((.(((.(((((.((.((((.((....................)).)))).)))).))))))))))))).....)))))))))))..))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body
........................GAAGCTGTTGTCAGTGCCCC...............................................................................................................................................................................................................	20	3	6	0.17	1	1

Species	Coordinate	ID	Alignment
droYak3	3L:22280355-22280605 +	dya_856	CATCTCGTTTCGCTGGTGGGAGAACTTCGCCAACACTCACGAGGCCATCGGTATGTGC--TTGCTCAATGACTATTTCCCGAAAATACGTTT------------------------------------------ATAGTTATCTACTCGTGCTAGGTCCTCGTGGTATTCAAAGTCGCTTTATAAGATATCACTC--------------AA---CGTCTTTTAAACACATA--------GGTTTAGTAATAACA-------------ATTATAATGGCTAG--TTA-----------------------ATA------------------------ATTCAAAGTTAGAAGAAATATTTGCAAATCCA-------TTACGTC--------------CGAGATT
droEre2	scaffold_4784:21630794-21631071 +		CATCTCGTTTCGCTGGTGGGAGAACTTCGCCAACACTCACGAGGCCATCGGTATGTGT--TTGCTCAATGACTATTTCCCGACAATACTTCTGTAGATACATATA---------------------------------ATATATACTCGTGCTGGGCCCTCGTCGTTTTCAAAGTCGCTTTATGAGATATCACTC--------------AA---CGACTTGGAATAATTTA--------CTT-TACTTATAATG-------------ATTATAATGGTTGGAAATTACACTTATTTTCAACATACAGTGTCA------------------------ATTCAAAGTAAG------TTGTTGCAAATCCA-------CTGCGTT--------------CGGGTTT
droSec2	scaffold_11:1882461-1882771 +		CATCTCGTTTCGCTGGTGGGAAAACTTCGCCAACACTCACGAGGCCATCGGTATGTGC--TTGCTTAATGACTAGTTCCCGACAATACGTACATACATACATATATAGATACATACATATATAGATATATAGATATAGATATCTA------CTAGGCTCTTTTGGTATTCAAAGGCGCTTTGAAAGTTATCACCCTGGCCCTGGTTATCATCCTGGACTCTTAAGCACTTA--------GTT-TATT---ATTA-------------ATTATAGTGGTCATAGATGACATTTACTTTCATCGTAAAGTGCCA------------------------ATTTAAAGTTAGACCGAATAATTGCAATTCCA-----------------------------------
droSim2	3l:21472144-21472433 +	dsi_24368	CATCTCGTTTCGCTGGTGGGAAAACTTCGCCAACACTCACGAGGCCATCGGTATGTGC--TTGCTCAATGACTAGTTCCCGACAATACGTACAT----ACATATATAGATACATACATATATAGATATATAGATATAGATATCTA------CTAGGCCCTCTTGGTATTCAAAGGCGCTTTGAAAGTTATCACTC--------------AA---CGACTCTTAAGCACTTA--------GTT-TATT---ATTA-------------ATTATAGTGGTCATAGATGACATTTACTTTCATCGTAAAGTGCCG------------------------ATTTAAAGTTAGACCGAATAATCGCAATTCCA-----------------------------------
dm3	chr3L:21956966-21957235 +		TATTTCGTTTCGCTGGTGGGAGAACTTCGCCAACACTCACGAGGCCATCGGTATGTGC--TTGACT-ATGACTATTTCCAGACAATACGTACATATGTACATATA------------------------------TAGATATCTAC-------------------AATTCAAAGGCGCATTCTAAGTTATCACTC--------------AA---TGACTCTTAAACACTTA--------GGT-TATT---ATTA-------------ATTATAATGGTCATAGATTACATTTTCTTCAAACATAAAGTTCCG------------------------ATTCAAAGTTAGACCGAATATTCGCAAATCCACGGGGGACTACGTC--------------TGGGAT-
droEug1	scf7180000409472:790636-790722 +		CGTCTCGTTCCGCTGGTGGGAAAACTTTGCCAACACCCACGAGGCCATCGGTGAGTGTG-TTGCTTATTGACTATTGACAGAACATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302377:1333943-1334014 -		CGTCTCGTTCCGCTGGTGGGAGAACTTCGCCAACACCCACGAGGCCATCGGTGAGTGG--TTGCTTATTGAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414002:103516-103588 +		CGTTTCGTTCCGCTGGTGGGAAAACTTCGCCAACACCCACGAGGCCATCGGTGAGTGT--TTGCTTATTGACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491199:883218-883300 -		CATCTCGTTCCGCTGGTGGGAGAACTTCGCCAACACCCACGAGGCCATCGGTGAGTGGGTTTTCCTATTGACTATTGACCGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000759602:3918-3999 +		CGTCTCGTTTCGCTGGTGGGAGAACTTTGCCAACACCCACGAGGCCATCGGTGAGTGGG-TTCCTTATAGACTACTGACCGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453945:111610-111690 +		CGTCTCGTTCCGCTGGTGGGAGAACTTCGCCAACACCCATGAGGCCATCGGTGAGTATG-TTGCTTGTTGATAACTGACTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302414:31444-31545 -		TTGCTTTAAATAATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------AAT-TATTTTAAACT-------------GATATATAACATATATATTATATTA--------------------------------------------TTTTAAAATATCAAAAAATACTTAAAAATTTA-------TTACAAT--------------TACAATT
droAna3	scaffold_12228:11410-11542 -		ATAA-AATACCACTCTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAAGCAAACTTTCAAGTAAGTTTGACCACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------ACACATCATGACGTATACGTGATGTTTTCTTAAAATTTG----------------------------------TTTTCTTAAACATATTTTTAT
droBip1	scf7180000396707:340442-340502 -		CGTATCGTTCCGCTGGTGGGAGAACTTTGCCAACCCCCACGAGGCCATCGGTAAGTGT--GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XR_group8:6030729-6030786 +		GGTCTCATTCCGCTGGTGGGAGAACTTTGCCAACACCCACGAGGCCATCGGTGAGTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_45:453322-453379 -		GGTCTCATTCCGCTGGTGGGAGAACTTTGCCAACACCCACGAGGCCATCGGTGAGTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004762:1866122-1866188 -		TGTATCGTTTCGTTGGTGGGAGAATTATGCCAATACACATGATGCAATCGGTGAGTCA--TTCTTCGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13049:20919586-20919641 +		GGTCTCGTTCCGCTGGTGGGAGAACTTTGCCAATACGCACGAGGCGATAGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:9819875-9820018 +		TTATTTTCTT------------------------------------------------------------------------------------------------------------------------------------------GT----ATTCCTCGTTGTATGCAATGTTGATGTATTGGTGAAGAATC--------------AA---CGCCTTTTAGATGTA----------------AACGTAGATATCGCAACAATCAACAATGGTGGCGT-----------------------------------------GCGTAAGTAATCATTCATCGCAAATAG----------------------------------TTTTCAT---------AGGTT
droGri2	scaffold_15110:22782460-22782515 -		GGTCTCGTTTCGCTGGTGGGAGAACTTTGCCAATAAGCACGCAGCGATTGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

CATCTCGTTTCGCTGGTGGGAGAACTTCGCCAACACTCACGAGGCCATCGGTATGTGC--TTGCTCAATGACTATTTCCCGAAAATACGTTT------------------------------------------ATAGTTATCTACTCGTGCTAGGTCCTCGTGGTATTCAAAGTCGCTTTATAAGATATCACTC--------------AA---CGTCTTTTAAACACATA--------GGTTTAGTAATAACA-------------ATTATAATGGCTAG--TTA-----------------------ATA------------------------ATTCAAAGTTAGAAGAAATATTTGCAAATCCA-------TTACGTC--------------CGAGATT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................CAACACTCACGAGGCCATCGC................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
......GTTTCGCTGGTGGGAGAAC..........................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................CTTCGCCAACACTCACGAGG.......................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CATCTCGTTTCGCTGGTGGGAGAACTTCGCCAACACTCACGAGGCCATCGGTATGTGT--TTGCTCAATGACTATTTCCCGACAATACTTCTGTAGATACATATA---------------------------------ATATATACTCGTGCTGGGCCCTCGTCGTTTTCAAAGTCGCTTTATGAGATATCACTC--------------AA---CGACTTGGAATAATTTA--------CTT-TACTTATAATG-------------ATTATAATGGTTGGAAATTACACTTATTTTCAACATACAGTGTCA------------------------ATTCAAAGTAAG------TTGTTGCAAATCCA-------CTGCGTT--------------CGGGTTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................AGAACTTCGCCAACACTCACG..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................ATACAGTGTCA------------------------ATTCAAAGTAAG------TT...............................................	25	1	1.00	1	0	0	0	0	0	1	0
.....CGTTTCGCTGGTGGGAGAACTT........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................GAACTTCGCCAACACTCACGAGGC......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0

droSec2

CATCTCGTTTCGCTGGTGGGAAAACTTCGCCAACACTCACGAGGCCATCGGTATGTGC--TTGCTTAATGACTAGTTCCCGACAATACGTACATACATACATATATAGATACATACATATATAGATATATAGATATAGATATCTA------CTAGGCTCTTTTGGTATTCAAAGGCGCTTTGAAAGTTATCACCCTGGCCCTGGTTATCATCCTGGACTCTTAAGCACTTA--------GTT-TATT---ATTA-------------ATTATAGTGGTCATAGATGACATTTACTTTCATCGTAAAGTGCCA------------------------ATTTAAAGTTAGACCGAATAATTGCAATTCCA-----------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droSim2

CATCTCGTTTCGCTGGTGGGAAAACTTCGCCAACACTCACGAGGCCATCGGTATGTGC--TTGCTCAATGACTAGTTCCCGACAATACGTACAT----ACATATATAGATACATACATATATAGATATATAGATATAGATATCTA------CTAGGCCCTCTTGGTATTCAAAGGCGCTTTGAAAGTTATCACTC--------------AA---CGACTCTTAAGCACTTA--------GTT-TATT---ATTA-------------ATTATAGTGGTCATAGATGACATTTACTTTCATCGTAAAGTGCCG------------------------ATTTAAAGTTAGACCGAATAATCGCAATTCCA-----------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................GC--TTGCTCAATGACTAGTTCCCGACA...............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ATACGTACAT----ACATA............................................................................................................................................................................................................................................................................................................	15	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0

dm3

TATTTCGTTTCGCTGGTGGGAGAACTTCGCCAACACTCACGAGGCCATCGGTATGTGC--TTGACT-ATGACTATTTCCAGACAATACGTACATATGTACATATA------------------------------TAGATATCTAC-------------------AATTCAAAGGCGCATTCTAAGTTATCACTC--------------AA---TGACTCTTAAACACTTA--------GGT-TATT---ATTA-------------ATTATAATGGTCATAGATTACATTTTCTTCAAACATAAAGTTCCG------------------------ATTCAAAGTTAGACCGAATATTCGCAAATCCACGGGGGACTACGTC--------------TGGGAT-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........CGCTGGTGGGAGAACTTCGC.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CGTTTCGCTGGTGGGAGAACTTC.......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGCTGGTGGGAGAACTTCGCC....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................AACTTCGCCAACACTCAC...........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGGTGGGAGAACTTCGCCAAC.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TCGTTTCGCTGGTGGGAGAACTTCGC.....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

CGTCTCGTTCCGCTGGTGGGAAAACTTTGCCAACACCCACGAGGCCATCGGTGAGTGTG-TTGCTTATTGACTATTGACAGAACATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGTCTCGTTCCGCTGGTGGGAGAACTTCGCCAACACCCACGAGGCCATCGGTGAGTGG--TTGCTTATTGAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGTTTCGTTCCGCTGGTGGGAAAACTTCGCCAACACCCACGAGGCCATCGGTGAGTGT--TTGCTTATTGACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATCTCGTTCCGCTGGTGGGAGAACTTCGCCAACACCCACGAGGCCATCGGTGAGTGGGTTTTCCTATTGACTATTGACCGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGTCTCGTTTCGCTGGTGGGAGAACTTTGCCAACACCCACGAGGCCATCGGTGAGTGGG-TTCCTTATAGACTACTGACCGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGTCTCGTTCCGCTGGTGGGAGAACTTCGCCAACACCCATGAGGCCATCGGTGAGTATG-TTGCTTGTTGATAACTGACTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGCTTTAAATAATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------AAT-TATTTTAAACT-------------GATATATAACATATATATTATATTA--------------------------------------------TTTTAAAATATCAAAAAATACTTAAAAATTTA-------TTACAAT--------------TACAATT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATAA-AATACCACTCTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAAGCAAACTTTCAAGTAAGTTTGACCACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------ACACATCATGACGTATACGTGATGTTTTCTTAAAATTTG----------------------------------TTTTCTTAAACATATTTTTAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------ACTCC...................................................................................................................................	27	18	6.56	118	22	95	1	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------ACT.....................................................................................................................................	25	18	6.17	111	8	103	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------ACTC....................................................................................................................................	26	18	2.89	52	8	44	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------ACC.....................................................................................................................................	25	18	2.22	40	0	40	0	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCCT-------------ACTC....................................................................................................................................	28	18	1.22	22	1	21	0	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCCT-------------ACTCC...................................................................................................................................	29	18	0.94	17	2	15	0	0	0	0
..........................................................................................................................................................................................................................................AAGTAAGTTTGACCACGCCT-------------ACTCC...................................................................................................................................	25	18	0.83	15	0	15	0	0	0	0
...................................................................................................................................................................................................................................AACTTTCAAGTAAGTTTGACCACGCC......................................................................................................................................................	26	18	0.78	14	0	14	0	0	0	0
.................................................................................................................................................................................................................................................TTTGACCACGCCT-------------ACTCCAACAGCCC...........................................................................................................................	26	17	0.65	11	0	11	0	0	0	0
.......................................................................................................................................................................................................................................TTCAAGTAAGTTTGACCACGCCT-------------ACTCC...................................................................................................................................	28	18	0.61	11	3	7	1	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCCT-------------AC......................................................................................................................................	26	18	0.50	9	2	7	0	0	0	0
.........................................................................................................................................................................................................................................CAAGTAAGTTTGACCACGCCT-------------ACTCC...................................................................................................................................	26	18	0.50	9	3	6	0	0	0	0
.............................................................................................................................................................................................................................................................................TCCAACAGCCCA--TAT-----------------------ACACATCATGACG.................................................................................	28	15	0.47	7	2	5	0	0	0	0
.................................................................................................................................................................................................................................................TTTGACCACGCCT-------------ACTCCAACAGCC............................................................................................................................	25	18	0.44	8	2	6	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------AC......................................................................................................................................	24	18	0.44	8	2	6	0	0	0	0
..................................................................................................................................................................................................................................AAACTTTCAAGTAAGTTTGACCACGCC......................................................................................................................................................	27	18	0.39	7	0	7	0	0	0	0
...................................................................................................................................................................................................................................................TGACCACGCCT-------------ACTCCAACAGCCCA--TA......................................................................................................................	27	17	0.35	6	1	5	0	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCCT-------------ACT.....................................................................................................................................	27	18	0.33	6	1	5	0	0	0	0
................................................................................................................................................................................................................................................................................AACAGCCCA--TAT-----------------------ACACATCATGACGTA...............................................................................	27	15	0.33	5	3	2	0	0	0	0
.....................................................................................................................................................................................................................................................ACCACGCCT-------------ACTCCAACAGCCCA--TA......................................................................................................................	25	17	0.29	5	1	4	0	0	0	0
..............................................................................................................................................................................................................................................AAGTTTGACCACGCCT-------------ACTCCAACAGCC............................................................................................................................	28	18	0.28	5	2	3	0	0	0	0
.............................................................................................................................................................................................................................................TAAGTTTGACCACGCCT-------------ACTCCAACA...............................................................................................................................	26	18	0.28	5	4	1	0	0	0	0
.............................................................................................................................................................................................................................................TAAGTTTGACCACGCCT-------------ACTCCAACAGC.............................................................................................................................	28	18	0.28	5	2	3	0	0	0	0
.............................................................................................................................................................................................................................................................................TCCAACAGCCCA--TAT-----------------------ACACATCATGAC..................................................................................	27	15	0.27	4	0	4	0	0	0	0
.......................................................................................................................................................................................................................................................CACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------ACA...........................................................................................	27	17	0.24	4	0	4	0	0	0	0
.....................................................................................................................................................................................................................................CTTTCAAGTAAGTTTGACCACGCC......................................................................................................................................................	24	18	0.22	4	1	3	0	0	0	0
.............................................................................................................................................................................................................................................TAAGTTTGACCACGCCT-------------ACTCCAACAGCC............................................................................................................................	29	18	0.22	4	2	2	0	0	0	0
.........................................................................................................................................................................................................................................CAAGTAAGTTTGACCACGCCT-------------ACT.....................................................................................................................................	24	18	0.22	4	0	4	0	0	0	0
...........................................................................................................................................................................................................................................................................................TAT-----------------------ACACATCATGACGTATACGTGATG......................................................................	27	14	0.21	3	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACAGCCCA--TAT-----------------------ACACATCATGACG.................................................................................	26	15	0.20	3	2	1	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACAGCCCA--TAT-----------------------ACACATCATGACGT................................................................................	27	15	0.20	3	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACAGCCCA--TAT-----------------------ACACATCATGAC..................................................................................	25	15	0.20	3	0	3	0	0	0	0
...................................................................................................................................................................................................................................................TGACCACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------..............................................................................................	28	17	0.18	3	1	2	0	0	0	0
...................................................................................................................................................................................................................................................TGACCACGCCT-------------ACTCCAACAGCCCA--T.......................................................................................................................	26	17	0.18	3	1	2	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------ACTCCAA.................................................................................................................................	29	18	0.17	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................CTTTCAAGTAAGTTTGACCACGCCT-------------ACTC....................................................................................................................................	29	18	0.17	3	2	1	0	0	0	0
.......................................................................................................................................................................................................................................TTCAAGTAAGTTTGACCACGCCT-------------ACTC....................................................................................................................................	27	18	0.17	3	0	3	0	0	0	0
.............................................................................................................................................................................................................................................................T-------------ACTCCAACAGCCCA--TAT-----------------------ACACATCATG....................................................................................	28	18	0.17	3	1	2	0	0	0	0
................................................................................................................................................................................................................................................GTTTGACCACGCCT-------------ACTCCAACAGC.............................................................................................................................	25	18	0.17	3	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................AACAGCCCA--TAT-----------------------ACACATCATGACGT................................................................................	26	15	0.13	2	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................AACAGCCCA--TAT-----------------------ACACATCATGACG.................................................................................	25	15	0.13	2	0	0	2	0	0	0
...............................................................................................................................................................................................................................................................................CAACAGCCCA--TAT-----------------------ACACATCATGACGTA...............................................................................	28	15	0.13	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................TGACCACGCCT-------------ACTCCAACAGCCC...........................................................................................................................	24	17	0.12	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................TTGACCACGCCT-------------ACTCCAACAGCCCA--........................................................................................................................	26	17	0.12	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................ACCACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------ACA...........................................................................................	29	17	0.12	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................ACCACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------AC............................................................................................	28	17	0.12	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................TTTGACCACGCCT-------------ACTCCAACAGCCCA--........................................................................................................................	27	17	0.12	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................TTCAAGTAAGTTTGACCACGCCT-------------ACT.....................................................................................................................................	26	18	0.11	2	1	1	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------ACTCCA..................................................................................................................................	28	18	0.11	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCC......................................................................................................................................................	23	18	0.11	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................ACTTTCAAGTAAGTTTGACCACGCC......................................................................................................................................................	25	18	0.11	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................AAGTAAGTTTGACCACGCCT-------------ACTCCA..................................................................................................................................	26	18	0.11	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................TAAGTTTGACCACGCCT-------------ACTCC...................................................................................................................................	22	18	0.11	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................CTTTCAAGTAAGTTTGACCACGCCT-------------AC......................................................................................................................................	27	18	0.11	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................CAAACTTTCAAGTAAGTTTGACCACGCC......................................................................................................................................................	28	18	0.11	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCCT-------------ACC.....................................................................................................................................	27	18	0.11	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................TTTGACCACGCCT-------------ACTCCAACAGC.............................................................................................................................	24	18	0.11	2	1	1	0	0	0	0
.............................................................................................................................................................................................................................................TAAGTTTGACCACGCCT-------------ACTCCAACAG..............................................................................................................................	27	18	0.11	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCCC-------------........................................................................................................................................	24	18	0.11	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------........................................................................................................................................	22	18	0.11	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGACGTATACGTGATGTTTTCTTAAAA...........................................................	27	12	0.08	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CA--TAT-----------------------ACACATCATGACGTATACGTGA........................................................................	27	13	0.08	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................GCCCA--TAT-----------------------ACACATCATGACGTATACG...........................................................................	27	13	0.08	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CCCA--TAT-----------------------ACACATCATGACGTATACGT..........................................................................	27	13	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................TAT-----------------------ACACATCATGACGTATACGTGA........................................................................	25	14	0.07	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................A--TAT-----------------------ACACATCATGACGTATACGTGATG......................................................................	28	14	0.07	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................ACAGCCCA--TAT-----------------------ACACATCATGACGTATA.............................................................................	28	14	0.07	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................CTCCAACAGCCCA--TAT-----------------------ACACATCATGAC..................................................................................	28	15	0.07	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................CCCA--TAT-----------------------ACACATCATGACGTA...............................................................................	22	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACAGCCCA--TAT-----------------------ACACATCATGACGTAC..............................................................................	29	15	0.07	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................CA--TAT-----------------------ACACATCATGACG.................................................................................	18	15	0.07	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAGCCCA--TAT-----------------------ACACATCATGACGTA...............................................................................	25	15	0.07	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................TCCAACAGCCCA--TAT-----------------------ACACATCATGACGT................................................................................	29	15	0.07	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................CCAACAGCCCA--TAT-----------------------ACACATCATGACG.................................................................................	27	15	0.07	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................AACAGCCCA--TAT-----------------------ACACATCATGAC..................................................................................	24	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACAGCCCA--TAT-----------------------ACACATCATGACGTAT..............................................................................	29	15	0.07	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ACAGCCCA--TAT-----------------------ACACATCATGACGTA...............................................................................	26	15	0.07	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TGATGTTTTCTTAAAATTTG----------------------------------TTTTCT...............	26	15	0.07	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................CCAACAGCCCA--TAT-----------------------ACACATCATGAC..................................................................................	26	15	0.07	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................AACAGCCCA--TAT-----------------------ACACATCATGACGC................................................................................	26	15	0.07	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................CCA--TAT-----------------------ACACATCATGACGTA...............................................................................	21	15	0.07	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TGTTTTCTTAAAATTTG----------------------------------TTTTCTTA.............	25	15	0.07	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................AGTTTGACCACGCCT-------------ACTCCAACAGCCC...........................................................................................................................	28	17	0.06	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................GCCT-------------ACTCCAACAGCCCA--TAT-----------------------ACACATC.......................................................................................	28	17	0.06	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................AAGTTTGACCACGCCT-------------ACTCCAACAGCCC...........................................................................................................................	29	17	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................CACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------ACACA.........................................................................................	29	17	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................TTGACCACGCCT-------------ACTCCAACAGCCCA--T.......................................................................................................................	27	17	0.06	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................ACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------ACACA.........................................................................................	28	17	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................CACGCCT-------------ACTCCAACAGCCCA--........................................................................................................................	21	17	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................TTGACCACGCCT-------------ACTCCAACAGCCC...........................................................................................................................	25	17	0.06	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................TTTGACCACGCCT-------------ACTCCAACAGCCCA--T.......................................................................................................................	28	17	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................CACGCCT-------------ACTCCAACAGCCCA--T.......................................................................................................................	22	17	0.06	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................CCT-------------ACTCCAACAGCCCA--TAT-----------------------ACACA.........................................................................................	25	17	0.06	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................TGACCACGCCT-------------ACTCCAACAGCCCA--........................................................................................................................	25	17	0.06	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................GACCACGCCT-------------ACTCCAACAGCCCA--TA......................................................................................................................	26	17	0.06	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GTTTGACCACGCCT-------------ACTCCAACAGCCC...........................................................................................................................	27	17	0.06	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................ACCACGCCT-------------ACTCCAACAGCCCA--T.......................................................................................................................	24	17	0.06	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................ACCACGCCT-------------ACTCCAACAGCCCA--TAT-----------------------A.............................................................................................	27	17	0.06	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................GCCT-------------ACTCCAACAGCCCA--T.......................................................................................................................	19	17	0.06	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCCT-------------A.......................................................................................................................................	25	18	0.06	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................TTTCAAGTAAGTTTGACCACGCCT-------------........................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................GTAAGTTTGACCACGCCT-------------ACT.....................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................GTAAGTTTGACCACGCCT-------------ACTCCAACA...............................................................................................................................	27	18	0.06	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------A.......................................................................................................................................	23	18	0.06	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................AAGTAAGTTTGACCACGCCT-------------ACTC....................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................T-------------ACTCCAACAGCCCA--TAT-----------------------ACACATCA......................................................................................	26	18	0.06	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................AGTTTGACCACGCCT-------------ACTCCAACA...............................................................................................................................	24	18	0.06	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................ACTTTCAAGTAAGTTTGACCACGCCT-------------........................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................AAGTTTGACCACGCCT-------------ACT.....................................................................................................................................	19	18	0.06	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................CAAGTAAGTTTGACCACGCCT-------------ACC.....................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................AGTTTGACCACGCCT-------------ACTCCAACAG..............................................................................................................................	25	18	0.06	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCC......................................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................AAGTAAGTTTGACCACGCCT-------------ACTCCAA.................................................................................................................................	27	18	0.06	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................TTCAAGTAAGTTTGACCACGCCT-------------ACC.....................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................CACGCCT-------------ACTCCAACAGCC............................................................................................................................	19	18	0.06	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................AAGTAAGTTTGACCACGCCT-------------AC......................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................TGACCACGCCT-------------ACTCCAACAGCC............................................................................................................................	23	18	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................TTCAAGTAAGTTTGACCACGCCT-------------AC......................................................................................................................................	25	18	0.06	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................CTTTCAAGTAAGTTTGACCACGCCT-------------........................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................AACTTTCAAGTAAGTTTGACCACGCCC-------------........................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................GTTTGACCACGCCT-------------ACTCCAACAGCC............................................................................................................................	26	18	0.06	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................AGTTTGACCACGCCT-------------ACTCCAACAGCC............................................................................................................................	27	18	0.06	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................CAAGTAAGTTTGACCACGCCT-------------ACTC....................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................TCAAGTAAGTTTGACCACGCCT-------------ACG.....................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................AAACTTTCAAGTAAGTTTGACCACGC.......................................................................................................................................................	26	19	0.05	1	0	1	0	0	0	0

droBip1

CGTATCGTTCCGCTGGTGGGAGAACTTTGCCAACCCCCACGAGGCCATCGGTAAGTGT--GTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGTCTCATTCCGCTGGTGGGAGAACTTTGCCAACACCCACGAGGCCATCGGTGAGTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.GTCTCATTCCGCTGGTGGGAG.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GTCTCATTCCGCTGGTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................AGAACTTTGCCAACACCCACGAG........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................GAACTTTGCCAACACCCACGA.........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGTCTCATTCCGCTGGTGGGAGAACTTTGCCAACACCCACGAGGCCATCGGTGAGTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.GTCTCATTCCGCTGGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
GGTCTCATTCCGCTGGTGGGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droWil2

TGTATCGTTTCGTTGGTGGGAGAATTATGCCAATACACATGATGCAATCGGTGAGTCA--TTCTTCGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...ATCGTTTCGTTGGTGGGAGAATTATGCC....................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
........TTCGTTGGTGGGAGAATTATGC.....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
........TTCGTTGGTGGGAGAATTATGCC....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..........................ATGCCAATACACATGATGC......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
................................ATACACATGATGCAATCGCCT..............................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0

droVir3

GGTCTCGTTCCGCTGGTGGGAGAACTTTGCCAATACGCACGAGGCGATAGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

TTATTTTCTT------------------------------------------------------------------------------------------------------------------------------------------GT----ATTCCTCGTTGTATGCAATGTTGATGTATTGGTGAAGAATC--------------AA---CGCCTTTTAGATGTA----------------AACGTAGATATCGCAACAATCAACAATGGTGGCGT-----------------------------------------GCGTAAGTAATCATTCATCGCAAATAG----------------------------------TTTTCAT---------AGGTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................ATGTTGATGTATTGGTGAAGAATC--------------..................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................TTGTATGCAATGTTGATGTATTGGTG.......................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AATCATTCATCGCAAATAG----------------------------------TTTTCA...............	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATCGCAACAATCAACAATGGT................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droGri2

GGTCTCGTTTCGCTGGTGGGAGAACTTTGCCAATAAGCACGCAGCGATTGGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dya_856

3L:22280405-22280555 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads