ID:

dya_851

 Coordinate:

3L:22048670-22048820 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.3 -13.1 -13.0

Flybase annnotation

exon [dyak_GLEANR_3385:2]; CDS [Dyak\GE19525-cds]; intron [Dyak\GE19525-in]

No Repeatable elements found

mature
  1. dya_851  3L:22048688-22048713 -
  2. 2R:18378971-18378996 +
  3. 3R:2630227-2630252 +
  4. 3R:12901756-12901781 +
  5. 3R:17897483-17897508 +
  6. v2_chrUn_5127:316-341 -
  7. chr2h:338203-338228 -
  8. v2_chrX_random_001:135413-135438 +
  9. v2_chrUn_142:700-725 +
  10. v2_chrUn_488:659-684 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTCGCGACCACGGAGTGCCCCTACAATCTGTTTGATAAGCCGGTTCAGAGGTAAGGTTTTAAAAATGATGATTAACTTTTTACTTAGCCCGAAATTCAAACACATTAATATCAAAAGATTTCTATTCTGGTTCTCAACAAAAGTTTTCTTGTAAAGTAATGTATATATTGCCTATGCCTATGCTGTAGAAATTTATGTAGAACCTGGTAAAGCTGCCACATAGGTAGCAGTAAACTTGTTTAATTCCAATT
**************************************************....((((.((((((...........))))))...))))..........................((((((((((...(((.....((((........))))...((((((....))))))....)))......)))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V120
male body		 M026
head
 GSM1528802
follicle cells
................................................................................................................................................................................................TTATGTAGAACCTGGTAAAGCT..................................... 22 0 11 0.36 4 0 1 3 0
.............................................................................................................................................................AATGTATATATTGCCTATGCCTATGC.................................................................... 26 0 10 0.30 3 3 0 0 0
.............................................................................................................................................................AATGTATATATTGCCTATGCCTATGCTG.................................................................. 28 0 10 0.20 2 2 0 0 0
..............................................................................................................................................................................................ATTTATGTAGAACCTGGTAAAGC...................................... 23 0 11 0.18 2 2 0 0 0
....................................................................................................................................................................................................GTAGAACCTGGTAAAGCTGC................................... 20 0 11 0.18 2 0 2 0 0
....................................................................................................................................................................ATATTGCCTATGCCTATGCTGT................................................................. 22 0 12 0.17 2 0 2 0 0
....................................................................................................................................................................................................GTAGAACCTGGTAAAGCTGCCA................................. 22 0 10 0.10 1 0 0 1 0
.......................................................................................................................................................................................................GAACCTGGGAAAGCTGCCACATAGGT.......................... 26 1 10 0.10 1 1 0 0 0
............................................................................................................................................................AAATGTATATATTGCCTATGCCTATGCTG.................................................................. 29 1 10 0.10 1 1 0 0 0
.......................................................................................................................................................................................................GAACCTGGTAAAGCTGCCACATA............................. 23 0 10 0.10 1 1 0 0 0
.................................................................................................................................................................................................TATGTAGAACCTGGTAAAGCTGCCACA............................... 27 0 10 0.10 1 1 0 0 0
.............................................................................................................................................................AATGTATATATTGCCTATGCCTAT...................................................................... 24 0 10 0.10 1 1 0 0 0
.......................................................................................................................................................................................................GAACCTGGTAAAGCTGCCACATAGG........................... 25 0 10 0.10 1 1 0 0 0
.............................................................................................................................................................AATGTATATATTGCCTATGCCTATG..................................................................... 25 0 10 0.10 1 1 0 0 0
.............................................................................................................................................................................................AATTTATGTAGAACCTGGTAAAGC...................................... 24 0 11 0.09 1 0 0 1 0
...........................................................................................................................................................GTAATGTATATATTGCCTATG........................................................................... 21 0 11 0.09 1 1 0 0 0
.............................................................................................................................................................AATGTATATATTGCCTATGCCT........................................................................ 22 0 11 0.09 1 1 0 0 0
......................................................................................................................................................................................CTGTAGAAATTTATGTAGAACCTG............................................. 24 0 11 0.09 1 1 0 0 0
.................................................................................................................................................................................................TATGTAGAGCCTGGTAAAGCTGCC.................................. 24 1 11 0.09 1 1 0 0 0
..........................................................................................................................................................................................AGAAATTTATGTAGAACCTG............................................. 20 0 11 0.09 1 1 0 0 0
..........................................................................................................................................................................CCTATGCCTATGCTGTAGAAATTTATG...................................................... 27 0 11 0.09 1 1 0 0 0
................................................................................................................................................................................................TTATGTAGAACCTGGTAAAGCTGC................................... 24 0 11 0.09 1 0 1 0 0
..........................................................................................................................................................................................AGAAATTTATGTAGAACCTGGTAAAGCT..................................... 28 0 11 0.09 1 0 1 0 0
.........................................................................................................................................................AAGTAATGTATATATTGCCTATGCC......................................................................... 25 0 11 0.09 1 1 0 0 0
..................................................................................................................................................................................................ATGTAGAACCTGGTAAAGCTGC................................... 22 0 11 0.09 1 0 1 0 0
...................................................................................................................................................................................................TGTAGAACCTGGTAAAGCTGC................................... 21 0 11 0.09 1 0 1 0 0
.............................................................................................................................................................AATGTATATATTGCCTATGCCTA....................................................................... 23 0 11 0.09 1 1 0 0 0
................................................................................................................................................................GTATATATTGCCTATGCCTA....................................................................... 20 0 11 0.09 1 1 0 0 0
.......................................................................................................................................................................................TGTAGAAATTTATGTAGAAC................................................ 20 0 11 0.09 1 0 1 0 0
..................................................................................................................................................................ATATATTGCCTATGCCTATGCTGT................................................................. 24 0 12 0.08 1 1 0 0 0
.........................................................................................................................................................................GCCTATGCCTATGCTGTAGA.............................................................. 20 0 12 0.08 1 1 0 0 0
....................................................................................................................................................................ATATTGCCTATGCCTATGCTGTAGA.............................................................. 25 0 12 0.08 1 1 0 0 0
...........................................................................................................................................................................CTATGCCTATGCTGTAGAAATTT......................................................... 23 0 12 0.08 1 1 0 0 0
.....................................................................................................................................................................................................................TGCCACATAGGTAGCAGTAAA................. 21 0 13 0.08 1 1 0 0 0
........................................................................................................................................................................................................AACCTGGTAAAGCTGCCACATAGGTA......................... 26 0 13 0.08 1 1 0 0 0
......................................................................................................................................................................................................................GCCACATAGGTAGCAGTAAACTTGT............ 25 0 13 0.08 1 0 1 0 0
..............................................................................................................................................................................................................................GGTAGCAGTAAACTTGTTTAATTCC.... 25 0 14 0.07 1 1 0 0 0
....................................................AAGGTTGTAAAAATGA....................................................................................................................................................................................... 16 1 14 0.07 1 0 0 0 1
........................................................................................................................................................................................................................CACATAGGTAGCAGTAAACTTGT............ 23 0 14 0.07 1 1 0 0 0
..................................................................................................................................................................................................................................GCAGTAAACTTGTTTAATTCCAAT. 24 0 14 0.07 1 1 0 0 0
........................................................................................................................................................................................................................CACATAGGTAGCAGTAAACTTGTTT.......... 25 0 14 0.07 1 1 0 0 0
..................................................................................................................................................................................................................................GCAGTAAACTTGTTTAATT...... 19 0 15 0.07 1 1 0 0 0

Anti-sense strand reads

GAGCGCTGGTGCCTCACGGGGATGTTAGACAAACTATTCGGCCAAGTCTCCATTCCAAAATTTTTACTACTAATTGAAAAATGAATCGGGCTTTAAGTTTGTGTAATTATAGTTTTCTAAAGATAAGACCAAGAGTTGTTTTCAAAAGAACATTTCATTACATATATAACGGATACGGATACGACATCTTTAAATACATCTTGGACCATTTCGACGGTGTATCCATCGTCATTTGAACAAATTAAGGTTAA
**************************************************....((((.((((((...........))))))...))))..........................((((((((((...(((.....((((........))))...((((((....))))))....)))......)))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 GSM1528802
follicle cells		 V058
head
 V046
embryo
 V120
male body
..........................................................................................................................................................................................................................GTATCCATCGTCATTTGAACAAATT........ 25 0 14 6.21 87 82 5 0 0 0 0
..............................................................................................................................................................................ACGGATACGACATCTTTAAATACAT.................................................... 25 0 13 0.85 11 10 1 0 0 0 0
............................................................................................................................................................................................................................ATCCATCGTCATTTGAACAAATT........ 23 0 15 0.67 10 4 0 6 0 0 0
..........................................................................................................................................................................................................................GTATCCATCGTCATTTGAACAAAT......... 24 0 15 0.60 9 9 0 0 0 0 0
.........................................................................................................................................................................................................................TGTATCCATCGTCATTTGAACAAATT........ 26 0 13 0.54 7 4 3 0 0 0 0
............................................................................................................................................................................ATACGGATACGACATCTTTAAATACAT.................................................... 27 0 11 0.45 5 4 1 0 0 0 0
.....................................................................................................................................................................ATAACGGATACGGATACGACATCTTT............................................................ 26 0 12 0.42 5 4 1 0 0 0 0
.....................................................................................................................................................................CTAACGGATACGGATACGACATCTTT............................................................ 26 1 12 0.42 5 0 0 5 0 0 0
.......................................................................................................................................................................................................................GGTGTATCCATCGTCATTTGAACAAATT........ 28 0 12 0.42 5 5 0 0 0 0 0
...................................................................................................................................AGAATTGTTTTCATAACAACAT.................................................................................................. 22 3 3 0.33 1 0 0 0 1 0 0
........................................................................................................................................................................................................................GTGTATCCATCGTCATTTGAACAAATT........ 27 0 13 0.31 4 4 0 0 0 0 0
....................................................................................................................................................................................ACGACATCTTTAAATACATCTTGGACCAT.......................................... 29 0 10 0.30 3 3 0 0 0 0 0
.....................................................................................................................................................................CTAACGGATCCGGATACGACATCTTT............................................................ 26 2 12 0.25 3 0 0 3 0 0 0
..................................................................................................................TTCAAAAGACAAGACCAAGAT.................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0
..............................................................................................................................................................................ACGGATACGACATCTTTAAATACA..................................................... 24 0 13 0.23 3 3 0 0 0 0 0
..............................................................................................................................................................................................................................CCATCGTCATTTGAACAAATTAAGGT... 26 0 14 0.21 3 1 2 0 0 0 0
............................................................................................................................................................................ATACTGATACGGCATCTTTAAATACAT.................................................... 27 2 11 0.18 2 2 0 0 0 0 0
.........................................................................................................................................................TTCATTACATATATAACGGATACGGAT....................................................................... 27 0 11 0.18 2 2 0 0 0 0 0
........................................................................................................................................................................ACGGATACGGATACGACATCTTTAAAT........................................................ 27 0 11 0.18 2 2 0 0 0 0 0
.........................................................................................................................................................................CGGATACGGATACGACATCTTTAAAT........................................................ 26 0 11 0.18 2 1 1 0 0 0 0
........................................................................................................................................................................................CATCTTTAAATACATCTTGGACCATTT........................................ 27 0 11 0.18 2 2 0 0 0 0 0
...................................................................................................................................................................ATATAACGGATACGGATACGACAT................................................................ 24 0 12 0.17 2 1 0 0 0 0 1
......................................................................................................................................................................................................................CGGTGTATCCATCGTCATTTGAACAAAT......... 28 0 13 0.15 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................TGTATCCATCGTCATTTGAACAAAGT........ 26 1 13 0.15 2 0 2 0 0 0 0
.........................................................................................................................................................................................................................CGTATCCATCGTCATTTGAACAAATT........ 26 1 14 0.14 2 0 2 0 0 0 0
..............................................................................................................................................................................................................................CCATCGTCATTTGAACAAATTAAGGTT.. 27 0 14 0.14 2 0 2 0 0 0 0
...........................................................................................................................................................................................................................TATCCATCGTCATTTGAACAAATT........ 24 0 15 0.13 2 2 0 0 0 0 0
............................................................................................................................................................................ATACTGATACGGCATCTT............................................................. 18 2 15 0.13 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................GTATCCATCGTCATTTGAA.............. 19 0 15 0.13 2 2 0 0 0 0 0
................................................................................................................................................................................................................................ATAGTCGTTTGAACAAATTA....... 20 2 18 0.11 2 2 0 0 0 0 0
..............................................................................................................................................................................ACGGATACGACATCTTTAAATACATCG.................................................. 27 1 10 0.10 1 1 0 0 0 0 0
..............................................................................................................................................................................ACGGATACGACATCTTTAAATACATCTT................................................. 28 0 10 0.10 1 1 0 0 0 0 0
...................................................................................................................................................................................................ACATCTTGGACCATTTCGACGGT................................. 23 0 10 0.10 1 1 0 0 0 0 0
..............................................................................................................................................................................................TAAATACATCTTGGACCATTTCGACGGT................................. 28 0 10 0.10 1 1 0 0 0 0 0
.......................................................................................................................................................................................................CTTGGACCATTTCGACGGTGTATCCAT......................... 27 0 10 0.10 1 1 0 0 0 0 0
.................................................................................................................................................................................................ATACATCTTGGACCATTTCGACGGT................................. 25 0 10 0.10 1 1 0 0 0 0 0
........................................................................................................................................................................................CATCTTTAAATACATCTT................................................. 18 0 11 0.09 1 1 0 0 0 0 0
............................................................................................................................................................................ATACGCATACGACATCTTCAAATACAT.................................................... 27 2 11 0.09 1 1 0 0 0 0 0
..........................................................................................................................................................................GTATACGGATACTACATCTTTACAT........................................................ 25 3 11 0.09 1 0 0 0 0 1 0
............................................................................................................................................................................ATACGGATACGACATCTTTAAATA....................................................... 24 0 11 0.09 1 1 0 0 0 0 0
..........................................................................................................................................................................GGATACGGATACGACATCTTTAAAT........................................................ 25 0 11 0.09 1 0 0 0 0 1 0
......................................................................................................................................................................TAACGGATACGGATACGACAT................................................................ 21 0 12 0.08 1 1 0 0 0 0 0
..................................................................................................................................................................TATATAACGGATACGGATACGACATC............................................................... 26 0 12 0.08 1 1 0 0 0 0 0
......................................................................................................................................................................ATACGGATACGGATACGACATCTTTAA.......................................................... 27 2 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................CGGATACGGATACGACATCTTT............................................................ 22 0 12 0.08 1 0 1 0 0 0 0
........................................................................................................................................................................ACGGATACGGATACGACATCTGT............................................................ 23 1 12 0.08 1 0 1 0 0 0 0
.........................................................................................................................................................................CGGATACGGATACGACATCTTTAA.......................................................... 24 0 12 0.08 1 1 0 0 0 0 0
...................................................................................................................................................................ATATAACGGATACGGATACGACATCTTT............................................................ 28 0 12 0.08 1 0 1 0 0 0 0
........................................................................................................................................................................ACGGATACGGATACGACATCTTT............................................................ 23 0 12 0.08 1 1 0 0 0 0 0
..............................................................................................................................................................................ACGGATACGACATCTTGAAATACAT.................................................... 25 1 13 0.08 1 1 0 0 0 0 0
....................................................................................................................................................................................ACGACATCTTTAAATACAT.................................................... 19 0 13 0.08 1 1 0 0 0 0 0
..............................................................................................................................................................................ACGGAGACGACATCTTTAAATACAT.................................................... 25 1 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GGTGTATCCATCGTCATTTGAACAA........... 25 0 13 0.08 1 1 0 0 0 0 0
..............................................................................................................................................................................ACGGATACGACATCTTTAAAT........................................................ 21 0 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GGTGTATCCATCGTCATTTGA............... 21 0 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GGTGTATCCATCGTCATTTGAACAAAT......... 27 0 13 0.08 1 1 0 0 0 0 0
..............................................................................................................................................................................ACGGATACGACATCTTTAAATACAG.................................................... 25 1 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................GGTGTATCCATCGTCATTTGAACAAA.......... 26 0 13 0.08 1 0 1 0 0 0 0
........................................................................................................................................................................................................................GTGTATCCATCGTCATTTGAA.............. 21 0 14 0.07 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................TGTATCCATCGTCATTTGAACAAAT......... 25 0 14 0.07 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................GTATCCATCGTCTTTTGAACAAAAT........ 25 2 14 0.07 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................GTATCCATCGTCATTTTAACAAATT........ 25 1 14 0.07 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTATCCATCGTCATTTAAACAAATT........ 25 1 15 0.07 1 1 0 0 0 0 0
............................................................................................................................................................................................................................ATCCATCGTCATTTGGACAAATT........ 23 1 15 0.07 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................GTATCCATCGTCATTTGAACAAATTGAA..... 28 2 15 0.07 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTATCCATCGTCATTTGAACAAATTC....... 26 1 15 0.07 1 0 1 0 0 0 0
............................................................................................................................................................................................................................ATCCCTCGTCATTTGAACAAATT........ 23 1 15 0.07 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................ATATCCATCGTCATTTGAACAAATT........ 25 1 15 0.07 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTATCCATCGTCATTTGGAAC............ 21 3 18 0.06 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3L:22048620-22048870 - dya_851 CTCGCGACCACGGAGTGCCCCTACAATCTGTTTGATAAGCCGGTTCAGAGGTAAGGTTTTAAAAATGATGATTAACTTTTTACTTAGCCCGAAATTCAAACACATTAATATCAAAAGATTTCTATTCTGGTTCTCAACAAAA--------------------GTTTTCTTGTAA------------------------------------------------------------------------------------------A--------GTAATGTATATATTG----------CCTATGCCTATGCT--G-------------TAGA----A------AT-TTATGTAGAACCTGGTAAAGCTGCCAC-ATAGGTAGCAGTAAACTTGTTTAATTC--CA-----------------------------------ATT
droEre2 scaffold_4784:18376543-18376665 + CTCGCGACCGCGGAGTGCCCCTACAATCTGTTTGATAAGCCGGCTCAGAGGTAAGATTTT------------------TTCACTTAACCCAAGATCCAAACACCTTAATATCAATAGATTTCT-----GGTTCTCAACAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------TTT
droSec2 scaffold_0:8228487-8228712 + CTCGCGACCAAGGAGTGCCCCTACAATCTGTTTGATAAGCCGGGTCAGAGGTAAGACTTTTAAAATGATGAGTTACTCTTTAACTAAGCCAAGATTCAAACACCTTAATATCAAAAGATCTTTATTCTGGTTCTCAAAAAATTATTAA--------------------------------------------------------------------------------------------------------------------A--------ACAATATCTATCT-----------TTA--------TCTATAT-------------A-------TATTTTGCCTTAAA----------------CATATTT-TAAGGCTTAATAATGCTAACTTAATTA--GC-----------------------------------TGT
droSim2 3l:15747506-15747688 + CTCGCGACCAAGGAGTGCCCCTACAATCTGTTTGATAAGCCGGGTCAGAGGTAAGACTTTTAAAATGATGAGTTACTCTTTAACTAAGCCAAGATCCAAACACCTTAATATCAAAAGATCTATATTC-GGTTCTCAAAAAATTATTAA--------------------------------------------------------------------------------------------------------------------A--------ACAATATCTAT--------------------------------------------------------------------------------------------------CTATATATATGTATGTATA--TA-----------------------------------TTT
dm3 chr3L:16128837-16128962 + CTCGCGACCAAGGAGTGCCCCTACAATCTATTTGATAAGCCGGTTCAGAGGTAAGATTTTCAAAATGATGAGTTACTCTTTAACTAAGCCAATATATAAACACTTTAATATCAAAAGATCTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droEug1 scf7180000409711:1212796-1212952 - CTCGCGACCAAGGAGTGCCCCTACAACCTATTCGATAAACCCTCTCAAAGGTAAGTTC---AATATT-TTAGTTAATCT------------------------------------------------------------------------------------------GTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCAT-AAAGATCAAAGTGTAGTGATTCATTTTTGTAAATAATCATTATTTATTTTATTTAAATATTTATTTATT
droBia1 scf7180000302334:544125-544238 - TTGTAAATGAATAG------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------A--------ATA-----------TTGTATAA-CTTTTATACCAACGCTTTG-------------T-------TAAA-CCCTAT-ATTTAAAACCTGGTCAAGCTGCCAT-ATAGGTAGCAGTATACCTGTTAATTCT--TA-----------------------------------ATA
droTak1 scf7180000415131:227428-227532 - TATAAAGTTAATGTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTATACCA--CATTTG-------------T-------TATT-CCCAGTAATTTACAACCTGCTCAAGCTGCCAC-ATAGGTAGCAGTATACCTGTTATTGTT--GA-----------------------------------ATA
droEle1 scf7180000491249:7313091-7313297 - CTTGCGGCCAAGGCGTGTCCCTACAACCTGTTCGACAAGCAGACTCAGAGGTAATTTGCCTAA--------------------------------------------------------------------------ATAAATTTCATAATTAATTAGTC--A------TTTTGTTTGATAAAAGGATCAATAGATGGTATTTTCATTCTAACGTTTTCCATTCATGATTCACAAAAAAATTACTCGATTAAACAATCCTTTAAAATGTATAT----------------------------------------------------------------------------------------------------------------AATATTTGTTTATT------------------------------------------TT
droRho1 scf7180000779479:573363-573596 - CTTACAATTAACT---------------------TTAGGCTGATATGGAGACGAGAAAAAGAAGATTAAA-----------------------------------------------------------------------------------------------------------------------------AAG--ATACCACCCACATGACCTCCCATCAAGACACATATAATATTTAAAAGCTAAAAGGAA---TTAAAATATAAATGAAATATATATATTTCGTATAATCTGTTATACCTAAAATTTG-------------T-------TATA-TCCTAT-ATTTACAACCTGCTCAAGCTGCCAC-ATAGGTAGCAGTATACCAGTTAAGTTTTGCA-----------------------------------ATA
droFic1 scf7180000454040:176803-176899 - AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------ATGTATAATC-TGTATACCAACCCTTAG-------------T-------TATC-CCCTAT-ATTTACAACCTGCTCAAGCTGCCAC-ATAGGTAGCAGTATACCCGTTAAA-----TA-----------------------------------ATA
droKik1 scf7180000302384:107732-107851 - AATAAA-----------------------------------------------------------------------------------------------------------------------------------AAAATTATTAA----------A---------------------------------------------------------------------------------------------------------A--------TTA-----------ATGTATAATCATGTATACCTAAATTTCG-------------T-------CCTTCCCCTGTAATGTACAACTTGTTTAAGCTGCCAC-ATAGGTAGCAGTATACTTGTTATTATT--GA-----------------------------------ATA
droAna3 scaffold_13337:10488874-10488942 - CTGGCGGCCAAAGAGTGTCCCTACAACTTTTTCGACAAGCCAACACAGAGGTAATATTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT--AA-----------------------------------TTA
droBip1 scf7180000393532:4889-4991 - AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------ATGTATAATCATTTATACCTACTTATTG-------------A-------TATTCCCCTGTAAATTACAACCTGTTCAAGCTGCCAC-AAAGGTAGCAGTATACCCGTTAATGTT--AA-----------------------------------ATA
dp5 2:21393347-21393477 + ATTGCAATTTAAATATTTTTTTTTAGCCAA--------------------------------------------------------------------------------------------------------------------------------AAACGGTCTTCCGAAG------------------------------------------------------------------------------------------A--------GTGATATAAATA-----T----------GTGA-------------------------------TCTA-ATAT-TCATGTAAAGCTAGATTAAGTTGCCCG-AAAGGTAGCAGTAAACTTGTTTAAAAT--AA-----------------------------------AAT
droPer2 scaffold_24:1238892-1238952 - CTGGCGGCCAAGGAGTGTGCCTACAACCTGTTCGACAAGCCAGCACAAAGGTAGGTCTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------
droWil2 scf2_1100000004511:3068426-3068522 - ATGTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA----------CCTGTGA---TCTATTG-------------T-------ATTTTCCCTTTAATGTAAAGCTAGGTTAAGTTGCCACTGAAGGTATCAGCAAACTAGTTTAAACC--AA-----------------------------------ATA
droVir3 scaffold_13049:1092862-1092916 + CTGGCATCCAAAAACTATGCCTACAATCTGTTTGATAAGCCGACGCAGCGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:23868856-23869008 - ATTTAAAAAAAT-----------------------------------------------------------------------------------------------------------TCATATTTTATTTAT------------------------AAAAATTCCTTTTTAA------------------------------------------------------------------------------------------A--------TTGTTATTGCTA---TGATATTTCT----------------GTAGTGCTGTACTGTAAATAATTGTG--TCT-TTATGTTCAACTTG-TTAAGCTGCCAA-TTAGGTAGTAAAAAGCCTGTTTAAATA--AA-----------------------------------ATT
droGri2 scaffold_15110:2240764-2240854 + CTGGCTTCGAAGGATTATGCCTACAATCTGTTTGACAAGACGGAGCAGCGGTGAGTCT------------------------------------------------------AAAAGATTTCTC--------------------------------------------------------------------------------------------------------------------------ATCT-------------------------------------------------------------------------------------------------------------------------------------------CCACTTACCTTG--CA-----------------------------------ATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CTCGCGACCACGGAGTGCCCCTACAATCTGTTTGATAAGCCGGTTCAGAGGTAAGGTTTTAAAAATGATGATTAACTTTTTACTTAGCCCGAAATTCAAACACATTAATATCAAAAGATTTCTATTCTGGTTCTCAACAAAA--------------------GTTTTCTTGTAA------------------------------------------------------------------------------------------A--------GTAATGTATATATTG----------CCTATGCCTATGCT--G-------------TAGA----A------AT-TTATGTAGAACCTGGTAAAGCTGCCAC-ATAGGTAGCAGTAAACTTGTTTAATTC--CA-----------------------------------ATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................TTATGTAGAACCTGGTAAAGCT...........................................................................22110.36430000010000
...................................................................................................................................................................................................................................................................................AATGTATATATTG----------CCTATGCCTATGC....................................................................................................................................26100.30303000000000
...................................................................................................................................................................................................................................................................................AATGTATATATTG----------CCTATGCCTATGCT--G-------------...................................................................................................................28100.20202000000000
.......................................................................................................................................................................................................................................................................................................................................................AT-TTATGTAGAACCTGGTAAAGC............................................................................23110.18202000000000
..............................................................................................................................................................................................................................................................................................................................................................GTAGAACCTGGTAAAGCTGC.........................................................................20110.18200000020000
..........................................................................................................................................................................................................................................................................................ATATTG----------CCTATGCCTATGCT--G-------------T..................................................................................................................22120.17200000020000
..............................................................................................................................................................................................................................................................................................................................................................GTAGAACCTGGTAAAGCTGCCA.......................................................................22100.10110000000000
.................................................................................................................................................................................................................................................................................................................................................................GAACCTGGTAAAGCTGCCAC-ATA..................................................................23100.10101000000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTAGAACCTGGTAAAGCTGCCAC-A....................................................................27100.10101000000000
...................................................................................................................................................................................................................................................................................AATGTATATATTG----------CCTATGCCTAT......................................................................................................................................24100.10101000000000
.................................................................................................................................................................................................................................................................................................................................................................GAACCTGGTAAAGCTGCCAC-ATAGG................................................................25100.10101000000000
...................................................................................................................................................................................................................................................................................AATGTATATATTG----------CCTATGCCTATG.....................................................................................................................................25100.10101000000000
................................................................................................................................................................................................................................................................................................................................................A------AT-TTATGTAGAACCTGGTAAAGC............................................................................24110.09110000000000
.................................................................................................................................................................................................................................................................................GTAATGTATATATTG----------CCTATG...........................................................................................................................................21110.09101000000000
...................................................................................................................................................................................................................................................................................AATGTATATATTG----------CCTATGCCT........................................................................................................................................22110.09101000000000
......................................................................................................................................................................................................................................................................................................................CT--G-------------TAGA----A------AT-TTATGTAGAACCTG...................................................................................24110.09101000000000
.........................................................................................................................................................................................................................................................................................................................................AGA----A------AT-TTATGTAGAACCTG...................................................................................20110.09101000000000
..........................................................................................................................................................................................................................................................................................................CCTATGCCTATGCT--G-------------TAGA----A------AT-TTATG............................................................................................27110.09101000000000
..........................................................................................................................................................................................................................................................................................................................................................TTATGTAGAACCTGGTAAAGCTGC.........................................................................24110.09100000010000
.........................................................................................................................................................................................................................................................................................................................................AGA----A------AT-TTATGTAGAACCTGGTAAAGCT...........................................................................28110.09100000010000
.............................................................................................................................................................................A------------------------------------------------------------------------------------------A--------GTAATGTATATATTG----------CCTATGCC.........................................................................................................................................25110.09101000000000
............................................................................................................................................................................................................................................................................................................................................................ATGTAGAACCTGGTAAAGCTGC.........................................................................22110.09100000010000
.............................................................................................................................................................................................................................................................................................................................................................TGTAGAACCTGGTAAAGCTGC.........................................................................21110.09100000010000
...................................................................................................................................................................................................................................................................................AATGTATATATTG----------CCTATGCCTA.......................................................................................................................................23110.09101000000000
......................................................................................................................................................................................................................................................................................GTATATATTG----------CCTATGCCTA.......................................................................................................................................20110.09101000000000
.......................................................................................................................................................................................................................................................................................................................T--G-------------TAGA----A------AT-TTATGTAGAAC......................................................................................20110.09100000010000
........................................................................................................................................................................................................................................................................................ATATATTG----------CCTATGCCTATGCT--G-------------T..................................................................................................................24120.08101000000000
...............................................................................................................................................................................................................................................................................................G----------CCTATGCCTATGCT--G-------------TAGA----...........................................................................................................20120.08101000000000
..........................................................................................................................................................................................................................................................................................ATATTG----------CCTATGCCTATGCT--G-------------TAGA----...........................................................................................................25120.08101000000000
...........................................................................................................................................................................................................................................................................................................CTATGCCTATGCT--G-------------TAGA----A------AT-TT...............................................................................................23120.08101000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGCCAC-ATAGGTAGCAGTAAA......................................................21130.08101000000000
..................................................................................................................................................................................................................................................................................................................................................................AACCTGGTAAAGCTGCCAC-ATAGGTA..............................................................26130.08101000000000
................................................................................................................................................................................................................................................................................................................................................................................GCCAC-ATAGGTAGCAGTAAACTTGT.................................................25130.08100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAGTAAACTTGTTTAATTC--C.......................................25140.07101000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAC-ATAGGTAGCAGTAAACTTGT.................................................23140.07101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCAGTAAACTTGTTTAATTC--CA-----------------------------------AT.24140.07101000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAC-ATAGGTAGCAGTAAACTTGTTT...............................................25140.07101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCAGTAAACTTGTTTAATT...........................................19150.07101000000000
droEre2
CTCGCGACCGCGGAGTGCCCCTACAATCTGTTTGATAAGCCGGCTCAGAGGTAAGATTTT------------------TTCACTTAACCCAAGATCCAAACACCTTAATATCAATAGATTTCT-----GGTTCTCAACAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------TTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................GCCCCTACAATCTGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..................................................................................................AACACCTTAATATCAATGAC.....................................................................................................................................................................................................................................................................................................................................20120.0810001000
droSec2
CTCGCGACCAAGGAGTGCCCCTACAATCTGTTTGATAAGCCGGGTCAGAGGTAAGACTTTTAAAATGATGAGTTACTCTTTAACTAAGCCAAGATTCAAACACCTTAATATCAAAAGATCTTTATTCTGGTTCTCAAAAAATTATTAA--------------------------------------------------------------------------------------------------------------------A--------ACAATATCTATCT-----------TTA--------TCTATAT-------------A-------TATTTTGCCTTAAA----------------CATATTT-TAAGGCTTAATAATGCTAACTTAATTA--GC-----------------------------------TGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droSim2
CTCGCGACCAAGGAGTGCCCCTACAATCTGTTTGATAAGCCGGGTCAGAGGTAAGACTTTTAAAATGATGAGTTACTCTTTAACTAAGCCAAGATCCAAACACCTTAATATCAAAAGATCTATATTC-GGTTCTCAAAAAATTATTAA--------------------------------------------------------------------------------------------------------------------A--------ACAATATCTAT--------------------------------------------------------------------------------------------------CTATATATATGTATGTATA--TA-----------------------------------TTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................TACAATCTGTTTGATA......................................................................................................................................................................................................................................................................................................................................................................................................................1612.00200000020000000000
...................................................................................................................................................................................................................................................................................AATATCTAT--------------------------------------------------------------------------------------------------CTATATATA....................................................1821.00200000200000000000
.....................TACAATCTGTTTGATAAGCCGGGTCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
...............TGCCCCTACAATCTGTTTGATAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
dm3
CTCGCGACCAAGGAGTGCCCCTACAATCTATTTGATAAGCCGGTTCAGAGGTAAGATTTTCAAAATGATGAGTTACTCTTTAACTAAGCCAATATATAAACACTTTAATATCAAAAGATCTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................AATCTATTTGATAAGCCGGTTC.............................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GATAAGCCGGTTCAGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AATCTATTTGATAAGCCGGTTCAGAGG........................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000
............................TATTTGATAAGCCGGTTC.............................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCGCGACCAAGGAGTGCCCCTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCCTACAATCTATTTGATAAGCCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGATAAGCCGGTTCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TCTATTTGATAAGCCGGTTCAGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTGATAAGCCGGTTCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTCGCGACCAAGGAGTGCCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GCCCCTACAATCTATTTGATAAGCCGG................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TATTTGATAAGCCGGTTCAGAGGTT......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTACAATCTATTTGATAAGCCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CTCGCGACCAAGGAGTGCCCCTACAACCTATTCGATAAACCCTCTCAAAGGTAAGTTC---AATATT-TTAGTTAATCT------------------------------------------------------------------------------------------GTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCAT-AAAGATCAAAGTGTAGTGATTCATTTTTGTAAATAATCATTATTTATTTTATTTAAATATTTATTTATTSizeHit CountTotal NormTotal
No Reads
droBia1
TTGTAAATGAATAG------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------A--------ATA-----------TTGTATAA-CTTTTATACCAACGCTTTG-------------T-------TAAA-CCCTAT-ATTTAAAACCTGGTCAAGCTGCCAT-ATAGGTAGCAGTATACCTGTTAATTCT--TA-----------------------------------ATASizeHit CountTotal NormTotal
No Reads
droTak1
TATAAAGTTAATGTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTATACCA--CATTTG-------------T-------TATT-CCCAGTAATTTACAACCTGCTCAAGCTGCCAC-ATAGGTAGCAGTATACCTGTTATTGTT--GA-----------------------------------ATASizeHit CountTotal NormTotal
No Reads
droEle1
CTTGCGGCCAAGGCGTGTCCCTACAACCTGTTCGACAAGCAGACTCAGAGGTAATTTGCCTAA--------------------------------------------------------------------------ATAAATTTCATAATTAATTAGTC--A------TTTTGTTTGATAAAAGGATCAATAGATGGTATTTTCATTCTAACGTTTTCCATTCATGATTCACAAAAAAATTACTCGATTAAACAATCCTTTAAAATGTATAT----------------------------------------------------------------------------------------------------------------AATATTTGTTTATT------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droRho1
CTTACAATTAACT---------------------TTAGGCTGATATGGAGACGAGAAAAAGAAGATTAAA-----------------------------------------------------------------------------------------------------------------------------AAG--ATACCACCCACATGACCTCCCATCAAGACACATATAATATTTAAAAGCTAAAAGGAA---TTAAAATATAAATGAAATATATATATTTCGTATAATCTGTTATACCTAAAATTTG-------------T-------TATA-TCCTAT-ATTTACAACCTGCTCAAGCTGCCAC-ATAGGTAGCAGTATACCAGTTAAGTTTTGCA-----------------------------------ATASizeHit CountTotal NormTotal
No Reads
droFic1
AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------ATGTATAATC-TGTATACCAACCCTTAG-------------T-------TATC-CCCTAT-ATTTACAACCTGCTCAAGCTGCCAC-ATAGGTAGCAGTATACCCGTTAAA-----TA-----------------------------------ATASizeHit CountTotal NormTotal
No Reads
droKik1
AATAAA-----------------------------------------------------------------------------------------------------------------------------------AAAATTATTAA----------A---------------------------------------------------------------------------------------------------------A--------TTA-----------ATGTATAATCATGTATACCTAAATTTCG-------------T-------CCTTCCCCTGTAATGTACAACTTGTTTAAGCTGCCAC-ATAGGTAGCAGTATACTTGTTATTATT--GA-----------------------------------ATASizeHit CountTotal NormTotal
No Reads
droAna3
CTGGCGGCCAAAGAGTGTCCCTACAACTTTTTCGACAAGCCAACACAGAGGTAATATTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT--AA-----------------------------------TTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------ATGTATAATCATTTATACCTACTTATTG-------------A-------TATTCCCCTGTAAATTACAACCTGTTCAAGCTGCCAC-AAAGGTAGCAGTATACCCGTTAATGTT--AA-----------------------------------ATASizeHit CountTotal NormTotal
No Reads
dp5
ATTGCAATTTAAATATTTTTTTTTAGCCAA--------------------------------------------------------------------------------------------------------------------------------AAACGGTCTTCCGAAG------------------------------------------------------------------------------------------A--------GTGATATAAATA-----T----------GTGA-------------------------------TCTA-ATAT-TCATGTAAAGCTAGATTAAGTTGCCCG-AAAGGTAGCAGTAAACTTGTTTAAAAT--AA-----------------------------------AATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................CG-AAAGGTAGCAGTAAACTTG..................................................21110.0910100000000
droPer2
CTGGCGGCCAAGGAGTGTGCCTACAACCTGTTCGACAAGCCAGCACAAAGGTAGGTCTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATGTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA----------CCTGTGA---TCTATTG-------------T-------ATTTTCCCTTTAATGTAAAGCTAGGTTAAGTTGCCACTGAAGGTATCAGCAAACTAGTTTAAACC--AA-----------------------------------ATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................AGCTAGGTTAAGTTGCCACTGAAGG................................................................25120.50605010
.......T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA----------CCTGTGA---TCTATTG-------------T-------ATTTTCC....................................................................................................2750.20101000
............................................................................................................................................................................................................................................................................................ATCA----------CCTGTGA---TCTATTG-------------T-------ATTTTCCCT..................................................................................................2850.20101000
...........................................................................................................................................................................................................................................................................................................CTGTGA---TCTATTG-------------T-------ATTTTCCCTT.................................................................................................2450.20101000
..................................................................................................................................................................................................................................................................................................................................................................AGCTAGGTTAAGTTGCCACTGAAG.................................................................24120.17201010
..GTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCA----------CCTGTGA---TCTATTG-------------...................................................................................................................24120.17202000
........................................................................................................................................................................................................................................................................................................................................................TTTAATGTAAAGCTAGGTTAAGTTG..........................................................................25100.10101000
........................................................................................................................................................................................................................................................................................................................................................TTTAATGTAAAGCTAGGTTAAGTT...........................................................................24100.10101000
..........................................................................................................................................................................................................................................................................................................................................................TAATGTAAAGCTAGGTTAAGTTGC.........................................................................24100.10100010
.........................................................................................................................................................................................................................................................................................................................................................TTAATGTAAAGCTAGGTTAAGTTGCCAC......................................................................28100.10101000
.......................................................................................................................................................................................................................................................................................................................................................CTTTAATGTAAAGCTAGGTTAAGT............................................................................24100.10100010
..........................................................................................................................................................................................................................................................................................................................................................................TAAGTTGCCACTGAAGGTATCAGC.........................................................24100.10100010
.............................................................................................................................................................................................................................................................................................................................................................TGTAAAGCTAGGTTAAGTTGCCAC......................................................................24110.09100010
..................................................................................................................................................................................................................................................................................................................................................TTTCCCTTTAATGTAAAGCTAGGT.................................................................................24110.09101000
...................................................................................................................................................................................................................................................................................................................................................................GCTAGGTTAAGTTGCCACTGAAGG................................................................24120.08101000
..................................................................................................................................................................................................................................................................................................................................................................AGCTAGGTTAAGTTGCCACTGA...................................................................22120.08101000
...............................................................................................................................................................................................................................................................................................................................................................TAAAGCTAGGTTAAGTTGCCACTGAAGG................................................................28120.08101000
.....................................................................................................................................................................................................................................................................................................................................................................TAGGTTAAGTTGCCACTGAAGGTA..............................................................24140.07100010
.......................................................................................................................................................................................................................................................................................................................................................................GGTTAAGTTGCCACTGAAGG................................................................20140.07101000
droVir3
CTGGCATCCAAAAACTATGCCTACAATCTGTTTGATAAGCCGACGCAGCGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................CTGTTTGATAAGCCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................1714.004000000000000000000000000000000000000000000000000000000000000004
................................TGATAAGCCGACGCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000100000000000000000000000000000000000000000
.....ATCCAAAAACTATGCCTACAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.....................TACAATCTGTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
droMoj3
ATTTAAAAAAAT-----------------------------------------------------------------------------------------------------------TCATATTTTATTTAT------------------------AAAAATTCCTTTTTAA------------------------------------------------------------------------------------------A--------TTGTTATTGCTA---TGATATTTCT----------------GTAGTGCTGTACTGTAAATAATTGTG--TCT-TTATGTTCAACTTG-TTAAGCTGCCAA-TTAGGTAGTAAAAAGCCTGTTTAAATA--AA-----------------------------------ATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................CAACTTG-TTAAGCTGCCAA-TTAGG................................................................24200.65131300000
..................................................................................................................................................................................................................................................................................................................................................................AACTTG-TTAAGCTGCCAA-TTAGG................................................................23200.204400000
.................................................................................................................................................................................................................................................................................................................................................................CAACTTG-TTAAGCTGCCAA-TTA..................................................................22200.102200000
.................................................................................................................................................................................................................................................................................................................................TGTACTGTAAATAATTGTG--TCT-TTATGCC..........................................................................................29200.102200000
...................................................................................................................................................................................................................................................................................................................................................................ACTTG-TTAAGCTGCCAA-TTAGG................................................................22200.102200000
.................................................................................................................................................................................................................................................................................................................................TGTACTGTAAATAATTGTG--TCT-TTA..............................................................................................25200.102200000
.................................................................................................................................................................................................................................................................................................................................................................CAACTTG-TTAAGCTGCCAA-TTAGGC...............................................................25200.051000010
..................................................................................................................................................................................................................................................................................................................................................................AACTTG-TTAAGCTGCCAA-TTAGGT...............................................................24200.051100000
................................................................................................................................................................................................................................................................................................................................................TGTG--TCT-TTATGTTCAACTTG-TTAA..............................................................................25200.051100000
..................................................................................................................................................................................................................................................................................................................................................................AACTTG-TTAAGCTGCCAA-TTAGGTA..............................................................25200.051100000
.................................................................................................................................................................................................................................................................................................................................TGTACTGTAAATAATTGTG--TCT-TTAT.............................................................................................26200.051000001
.............................................................................................................................................................................................................................................................................................................................................AATTGTG--TCT-TTATGTTCAACTT....................................................................................23200.051100000
..........................................................................................................................................................................................................................................................................................................................................................TTATGTTCAACTTG-TTAAGCTGC.........................................................................23200.051000010
.................................................................................................................................................................................................................................................................................................................................................................CAACTTG-TTAAGCTGCCAA-TT...................................................................21200.051100000
...................................................................................................................................................................................................................................................................................................................................................G--TCT-TTATGTTCAACTTG-TTAAG.............................................................................23200.051100000
.................................................................................................................................................................................................................................................................................................................................TGTACTGTAAATAATTGTG--TCT-T................................................................................................23200.051100000
.....................................................................................................................................................................................................................................................................................................................................CTGTAAATAATTGTG--TCT-TTATGT...........................................................................................24200.051100000
..................................................................................................................................................................................................................................................................................................................................................................AACTTG-TTAAGCTGCCAA-TTAGGTAG.............................................................26200.051100000
..................................................................................................................................................................................................................................................................................................................................GTACTGTAAATAATTGTG--TCT-TTATGT...........................................................................................27200.051100000
..............................................................................................................................................................................................................................................................................................................................................................GTTCAACTTG-TTAAGCTGCCAA-TT...................................................................24200.051100000
..........................................................................................................................................................................................................................................................................................................................................................TTATGTTCAACTTG-TTAAGCTGCCA.......................................................................25200.051100000
................................................................................................................................................................................................................................................................................................................................................TGTG--TCT-TTATGTTCAACTTG-TTAAG.............................................................................26200.051100000
.....................................................................................................................................................................................................................................................................................................................................CTGTAAATAATTGTG--TCT-TTATG............................................................................................23200.051100000
..........................................................................................................................................................................................................................................................................................................................................................TTATGTTCAACTTG-TTAAGCTGCCAA-T....................................................................27200.051100000
..................................................................................................................................................................................................................................................................................................................................................TG--TCT-TTATGTTCAACTTG-TTAAG.............................................................................24200.051100000
...................................................................................................................................................................................................................................................................................................................................TACTGTAAATAATTGTG--TCT-TTATG............................................................................................25200.051100000
................................................................................................................................................................................................................................................................................................................................................TGTG--TCT-TTATGTTCAAC......................................................................................18200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................CCAA-TTAGGTAGTAAAAAGCCTGTT................................................25200.051100000
.....................................................................................................................................................................................................................................................................................................................................CTGTAAATAATTGTG--TCT-TTAA.............................................................................................22200.051100000
.................................................................................................................................................................................................................................................................................................................................................................CAACTTG-TTAAGCTGCCAA-TTAG.................................................................23200.051000010
droGri2
CTGGCTTCGAAGGATTATGCCTACAATCTGTTTGACAAGACGGAGCAGCGGTGAGTCT------------------------------------------------------AAAAGATTTCTC--------------------------------------------------------------------------------------------------------------------------ATCT-------------------------------------------------------------------------------------------------------------------------------------------CCACTTACCTTG--CA-----------------------------------ATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:27 PM