ID:

dya_849

 Coordinate:

3L:21811679-21811922 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.8

Flybase annnotation

CDS [Dyak\GE19566-cds]; exon [dyak_GLEANR_3423:3]; exon [dyak_GLEANR_3423:4]; CDS [Dyak\GE19566-cds]; intron [Dyak\GE19566-in]

No Repeatable elements found

mature
  1. dya_849  3L:21811794-21811819 -
  2. v2_chr3L_random_007:5049-5074 +
star
  1. dya_849  3L:21811755-21811773 -
  2. v2_chr3L_random_007:5095-5113 +

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATCTTATCGCTGACTGGGATTACCTTGCTTTATATCTACTTCACCACCCGTGAGTGTCGTTTCTTCTGCTTGANNNNNNNNNNAATCTCATATTCTGTCTAGCGATCAGCGTTATTTCGATTTTGCCAGCCGTGCAGGAACGCTTGCCCCATTCCGGTCTATTGCAGAGCTCCTTGGTTACCTTATACACTGTGTATTTGACCTGGTCCGCAGTGGCCAACAACCCTGGTAGGAAAATAGCGCCAGAGTCTGTATGAATTGCTCACTTGGTTTTTACTGTTTTTAACCCATAGAAAAAGAATGCAATCCTGGTATGTTCGGTATGATGGAGGGATTCGGCAAT
*********************************************************************************************************************************************************......(((((((.((...((..(((((...(((((...)))))..))))).)))).))))))).****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V120
male body		 M026
head
 V058
head
 V046
embryo
 M056
embryo
 GSM1528802
follicle cells		 V052
head
.........................................................................................................................................................TCCGGTCTATTGCAGAGCTCCTTGGT..................................................................................................................................................................... 26 0 2 1.00 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................GATGGAGGGATTCGGCT.. 17 1 2 0.50 1 0 0 0 1 0 0 0 0
............................................................................................................................................................GGTCTATTGCAGAGCTCCTTGGT..................................................................................................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TGACCTGGTCCGCAGTGGC.............................................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0
.........................................................................................................................................GGAACGCTTGCCCCATTCCGGT......................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................CTCATATTCTGTCTAGCGATCAGC......................................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................ATGATGGAGGGATTCGGCA.. 19 0 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................................ATCTCATATTCTGTCTAGC................................................................................................................................................................................................................................................ 19 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TGGAATGTACGGTATTATGGAG............ 22 3 2 0.50 1 0 0 0 1 0 0 0 0
...............................................................................................................................CAGCCGTGCAGGAACGCTT...................................................................................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................GCAGAGCTCCTTGGTTACCTT............................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................AATGCAATCCTGGTATGTTC........................ 20 0 2 0.50 1 0 1 0 0 0 0 0 0
..........................................................................................ATATTCTGTCTAGCGATCAGCGTT...................................................................................................................................................................................................................................... 24 0 2 0.50 1 0 0 0 1 0 0 0 0
.................................................................................................................................................TGCCCCATTCCGGTCTATTGCAGAGCTC........................................................................................................................................................................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0
.....................................................................................ATCTCATATTCTGTCTAGCGATCAGC......................................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................................................................................GGTCTATTGCAGAGCTCCTTGGTTACC................................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0
.........................................................................................CATATTCTGTCTAGCGATCAGC......................................................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................AAAAAGAATGCAATCCTGGTATGTT......................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................GATGGAGGGATTCGGCAAT 19 0 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................................................................................TCGATTTTGCCAGCCGTGCAGGA............................................................................................................................................................................................................ 23 0 2 0.50 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................ATTTGACCTGGTCCGCAGT................................................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................................GTTATTTCGATTTTGCCAGC..................................................................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0
..................................................................................................................................................GCCCCATTCCGGTCTATTGCAGAGCTCCT......................................................................................................................................................................... 29 0 2 0.50 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................ATTCCGGTCTATTGCAGAGCTCC.......................................................................................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GCAATCCTGGTATGTTCGGT..................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GTATGTTCGGTATGATGGA............. 19 0 2 0.50 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TGGTATGTTATGTAGGATGGAG............ 22 3 2 0.50 1 0 0 0 0 1 0 0 0
..........................................................................................................................TTTGCCAGCCGTGCAGGAACGCTTGCCCC................................................................................................................................................................................................. 29 0 2 0.50 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................ATGTTCGGTATGATGGAG............ 18 0 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................CTATTGCAGAGCTCCTTGG...................................................................................................................................................................... 19 0 2 0.50 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................CACTGTGTGTTTGACCTGGTCTGCAGT................................................................................................................................. 27 2 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................................CGTGCAGGAACGCTTGCCCCATTCCGGT......................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................TTACCTTATACACTGTGTATTTGACCTG.......................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0
.........................................................................................................................TTTTGCCAGCCGTGCAGGAACGCTTGC.................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0
TATCTTATCGCTGACTGGGA.................................................................................................................................................................................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ATGCAATCCTGGTATGTTCGGT..................... 22 0 2 0.50 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................TCCGGTCTATTGCAGAGCTCC.......................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................CAACCACCTTGGTAGGAA............................................................................................................ 18 2 7 0.43 3 0 0 0 0 0 0 3 0
.........................................................................................................................TTTTGCCAGCAGTGCAGGA............................................................................................................................................................................................................ 19 1 3 0.33 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TGGTATGTATAGTATGATGGAG............ 22 3 4 0.25 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................GGTCTGTTCGGTATCATG............... 18 2 5 0.20 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TGGTATGTACAGTAGGATGGA............. 21 3 5 0.20 1 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................TCACTTGGTTTTAACGGTTCT............................................................ 21 3 7 0.14 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................GGTTAACTTGCACACTGTGT.................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATAGAATAGCGACTGACCCTAATGGAACGAAATATAGATGAAGTGGTGGGCACTCACAGCAAAGAAGACGAACTNNNNNNNNNNTTAGAGTATAAGACAGATCGCTAGTCGCAATAAAGCTAAAACGGTCGGCACGTCCTTGCGAACGGGGTAAGGCCAGATAACGTCTCGAGGAACCAATGGAATATGTGACACATAAACTGGACCAGGCGTCACCGGTTGTTGGGACCATCCTTTTATCGCGGTCTCAGACATACTTAACGAGTGAACCAAAAATGACAAAAATTGGGTATCTTTTTCTTACGTTAGGACCATACAAGCCATACTACCTCCCTAAGCCGTTA
******************************************************************************************************************************......(((((((.((...((..(((((...(((((...)))))..))))).)))).))))))).********************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V058
head
 V120
male body
........................................................................................................................................TCGTTGCGATCGGGGGAAG............................................................................................................................................................................................. 19 3 20 2.80 56 52 2 2
.........................................................................................................................................CGTTGCGATCGGGGTAAG............................................................................................................................................................................................. 18 2 2 0.50 1 1 0 0
...............................................................................................................................................................................AGCAAGGGAATATGGGACA...................................................................................................................................................... 19 3 10 0.10 1 0 1 0
......................................................................................................................................................................................................................TCCGGTTGTTGGGCGCATC............................................................................................................... 19 3 20 0.05 1 0 1 0
..............................................................................................................................................................................................................................................................................................TGGGTATTCTTTTCGTACGT...................................... 20 3 20 0.05 1 0 1 0
.................................................................................................................................................................................................................................................................................................................GTAGGACCATTCAGGCCAT.................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3L:21811629-21811972 - dya_849 TATCTTATCGCTGACTGGGATTACCTTGCTTTATATCTACTTCACCACCCGTGAGTGT-CG---T-T-----TCTTCTGCT----TG----------------------------------------------------------------------------------------------------------------ANNNNNNNNNNAATCTCATATTCTGTCTAGCGATCAGCGTTATTTCGATTTTGCCAGCCGTGCAGGAACGCTTGCCCCATTCCGGTCTATTGCAGAGCTCCTTGGTTACCTTATACACTGTGTATTTGACCTGGTCCGCAGTGGCCAACAACCCTGGTAGGA-----------AAA-T------------AGC-----GCCAGAGTCTGT--AT------GAATTG-----C---T-CACTTGGTTTTTACTGTTTTTAA-CCCATAGAAAAAGAATGCAATCCTGGTATGTTCGGTATGATGGAGGGA-----TTCGGCAAT
droEre2 scaffold_4784:18652901-18653299 + CATCTTATCGCTGACTGGAATTACCCTGCTTTATATCTACTTCACCAC-CGTGAGTGC-CG---T-T-----TCCTCTGCT----TGTTTG---CT----T-GC-AA-TT-A-------------A----C-----------ATTATTTGTATATTTCTAGAGTACTGGCTGCGGCATCAACAAGTTCTTCATTTCCATC----------AACCTCATATTCTGTTTAGCGATCAGTGTTATTTCGATTTTGCCAGCCGTGCAGGAACGCTTGCCCCATTCTGGTTTATTGCAGAGCTCCTTGGTTACCTTATACACGGTGTATCTAACCTGGTCCGCAGTGGCCAACAATCCGGGTAGGA-----------AAA-C------------AGC-----GGCAAACTCTGT--AT------GCATTT----CT---C-ACTTGA--------TTTAATGAA-TCCATAGAAAAAGAATGCAATCCTGGCATGTTCGGCATGATGGAGGGA-----TTCGGCAAT
droSec2 scaffold_0:8501223-8501623 + TATCTTATCGCTGACTGGAATTACCTTGCTTTATATCTACTTCACCAC-CGTGAGTGT-CG---T-T-----TCTATGGCC----TATTTA---CT----TTGT-AA-TT-A-------------G----C-----------ATTGTGTTTATATTTCTAGAGCACTGGCTGCGGCATCAACAAGTTCTTCATCTCCATC----------AATCTGATATTCTGCCTGGCGATCAGCGTCATTTCGATTCTACCAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTATTGCAGAGCTCCCTGGTTACCTTGTACACGGTGTATCTAACCTGGTCCGCAGTGGCCAACAATCCTGGTAGGA-----------AAA-T------------AAC-----TCCAGAACCTAT--AT------GAATAT-----C---T-TATTGTGT------TCTTATGAA-TTCATAGAGAAAGAATGCAATCCTGGCATGTTTGGCATGATGGAGGGA-----TTCGGCAAT
droSim2 3l:16021386-16021786 + TATCTTATCGCTGACTGGAATTACCATGCTTTATATCTACTTCACCAC-CGTGAGTGT-CG---T-T-----TCTATGGCC----TGTTTA---CT----TTGT-AA-TT-A-------------C----C-----------ATTGTGTTTATATTTCTAGAGCACTGGCTGCGGCATCAACAAGTTCTTCATCTCCATC----------AATCTCATATTCTGTCTGGCGATCAGCGTCATTTCGATTCTGCCAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTACTGCAGAGCTCCCTGGTTACCTTGTACACGGTGTATCTAACCTGGTCCGCAGTGGCCAACAATCCTGGTAGGA-----------AAA-T------------ACC-----TCCAGAACCTAT--AC------GAATAT-----C---T-CATTTTGT------TCTTACGAA-TTCATAGAGAAAGAATGCAATCCTGGCATGTTTGGCATGATGGAGGGA-----TTCGGCAAT
dm3 chr3L:16407030-16407433 + TATCTTATCGCTGACTGGAATTACCTTGCTTTATATCTACTTCACCAC-CGTGAGTGT-CG---T-T-----TCTATGGCT----TATTTA---CT----TTGT-AA-TT-A-------------G----C-----------ATTGTTTTTATATTTGTAGAGTACTGGCTGCGGCATCAACAAGTTCTTCATCTCCATC----------AATCTCATATTCTGTCTGGCGATTAGCGTCATTTCGATTCTGCCAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTACTGCAGAGCTCCCTGGTTACCTTGTACACGGTGTATCTAACCTGGTCGGCAGTGGCCAACAATCCTGGTAGGA-----------AAA-T------------GAA-----TCCAGAACCC-----TATATGTGTATAT-----C---T-CATTTGGT------TGTTTTGAA-TCAACAGAGAAAGAATGCAATCCAGGCATGTTTGGCATGATGGAGGGA-----TTCGGCAAT
droEug1 scf7180000409711:923993-924396 - TATCTTATCGTTGACTGGGATTACGCTGCTTTATATCTACTTTACCAC-TGTGAGATT-AA---A-A-----TGTTAGGTT----GTATTG---CT----TGG-TAC-T-TA-------------A----------------GTAATTTCCATATTTTTAGAGTACTGGATGCGGCATCAACAAGTTCTTCATCTCCATT----------AATCTGATATTCTGTTTGGTGATCAGTGTCATATCGATTTTACCAGCTGTCCAGGAACGTTTGCCACATTCCGGTTTATTGCAGAGCTCCCTGGTTACCTTATACACGGTTTATCTTACCTGGTCCGCTGTGGCCAACAATCCGGGTAGGA-----------AAG-C------------CTC-----TTTAAAATCAAT--GTACATGTG--AAG-----A---T-TATCGTTT------TTTTTTAAA-CCCTCAGAAAAGGAATGCAATCCTGGAATGTTCGGAATGATGGAGGGA-----TTCGGAAAC
droBia1 scf7180000302428:3699911-3700308 - TATCTTATCGCTGACTGGGATTACCCTGCTTTATATCTATTTCACCAC-TGTGAGTTG-AT---A-T-----TGTCCAGTT----TATTAT---ATTGC-----ATTGC-TG-------------A----------------GTGTTTTATGTATTTCTAGAGCACCGGCTGCGGCATCAACAAGTTCTTTATCTCCATC----------AATCTCATATTCTGTTTGGCGATCAGCGTGATTTCGGTTCTGCCGGCTGTCCAGGAGCGTTTGCCCCACTCGGGCTTGTTGCAGAGCTCCTTGGTTACCTTGTACACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTAGGA-----------GAA-A----------CCCAC-----CGCAAAATGTGT--AT------CAATGC-----C---T-GATTTC--------CCT---TCA-TCCACAGAAAAAGAATGCAATCCTGGCATGTTCGGCATGATGGAGGGA-----TTCGGCAAT
droTak1 scf7180000415857:796836-797232 + TATCTTATCGCTGACTGGAATTACCATGCTTTATATCTACTTTACCAC-TGTGGGTTG-AT---T-T-----TACTAAGCC----TTCTTAAGACC----TTTT-A-------------------A----------------TTGATATCTTTATTTTTAGAGCACCGGCTGCGGCATCAACAAGTTCTTTATCTCCATT----------AATCTCATCTTCTGCCTGGTGATCAGCGTCATTTCGGTTTTGCCGGCTGTCCAGGAGCGTCTGCCCCATTCGGGCTTGTTGCAGAGCTCCTTGGTTACCCTATACACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTACAA-----------AAA-A------------TAC-----ATAAAAATATAT--AT------ATCTTA-----C---T-AATTTC--------TTTACCCCA-CCTTCAGAAAAAGAATGCAATCCTGGAATGTTTGGCATGATGGAGGGA-----TTCGGCAAT
droEle1 scf7180000491249:7023077-7023475 - TATCTTATCGCTGACTGGGATTACACTGCTTTATATCTACTTTACCAC-TGTGAGTGG-AG---A-T-----TGTCATGCT----TATTTG---TT----TGG-TTT-T-TA-------------A----------------CTCTTCTGGTTTTTTTTAGAGTACTGGCTGCGGCATCAACAAGTTCTTTATCTCCATT----------AATCTGATCCTTTGTTTGATGATCAGCGTTATTTCGATTTTGCCAGCTGTGCAGGATCGTTTGCCCCATTCTGGATTATTGCAGAGCTCTTTGGTTACCTTATACACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTAGGA-----------AAA-C------------TGC-----TGTAAAATGTGT--AG------AAAATT----TC---T-AATTTA--------TATTATGAA-TCCATAGAAAAAGAATGCAATCCTGGAATGTTTGGCATGATGGAGGGT-----TTCGGCAAT
droRho1 scf7180000778273:48067-48468 + TATCTTATCGCTGACTGGGATTACTCTGCTTTATATCTACTTCACCAC-TGTGAGTGT-AA---A-T-----TGTGAAGCT----AATTTG---TTTGC-----TTTTT-TA-------------A----------------CTGATGTCTTTATTGTTAGAGCACTGGCTGCGGCATCAACAAGTTCTTTATCTCCATT----------AATCTCATCTTTTGTTTGGTGATCAGCGTTATATCGATTTTGCCAGCTGTGCAGGAGCGTTTGCCCCATTCCGGTCTATTGCAGAGCTCCTTGGTTACCTTATACACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTAGGC-----------AAAAC------------TAC-----GGCAAAATATATAA-T------A--TAG--TTTA---T-AATTTA--------TCTTGTAAA-CCCATAGAAAAAGAATGCAATCCCGGAATGTTTGGAATGATGGAGGGT-----TTCGGCAAT
droFic1 scf7180000453839:1798475-1798874 + TATCTTATCGCTGACTGGGATTACTCTGCTTTATATCTACTTTACCAC-TGTGAGTTT-AA---A-T-----AATCAAGAT----TATTTG---CTTGT-----TT--T-GA-------------A-A--T-----------GTAACCTCTGCATTTTTAGAGTACCGGCTGCGGCATCAACAAGTTCTTTATCTCTATA----------AATCTCATCCTATGTTTGGTGATCAGCGTTATTTCGATTTTGCCAGCTGTGCAGGAGCGTTTGCCACATTCCGGTTTATTGCAGAGCTCCTTGGTCACCTTATATACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTATGA-----------AAT-G------------TAA-----CACAAAATATGT--AG------AAATCG-----C---T-TATATC--------TCTTGTAAACCCTTTAGAAAAGGAATGCAATCCTGGAATGTTTGGCTTGATGGACGGT-----TTTGGAAAT
droKik1 scf7180000302329:164282-164684 + TATCTTATCGCTGACCGGGATTACGCTGCTGTACATCTACTTTACCAC-TGTGAGTGGGAG---T-T-----TATAAGGCT----TATTTG---TT----ATTT-AC-TC-A-------------A----G--------------ATTTTTATATTTGTAGAGCACTGGATGCGGCATCAACAAGTTCTTCATCTCTATC----------AACCTCATACTCTGCCTGGTAATTAGCGTGATCTCGATCTTGCCCGCTGTTCAGGAGCGTTTGCCACACTCCGGCCTGCTGCAGAGCTCCCTGGTCACCCTGTACACGATCTATTTGACCTGGTCCGCTGTGGCCAATAATCCGGGTAGGC-----------AAT-C---CTTGGAGGA--ATCCTGGTTAAAACG----------------TCG--TTGA-----AATTAA--------ATCTATAAA-CTTCCAGAGAAGGAATGCAATCCTGGCATGTTCGGCTTGATGGATGGC-----GTTGGCAAT
droAna3 scaffold_13337:8906506-8906900 - CATCTTATCGTTGACTGGGATTACGCTGCTCTATATCTACTTCACCAC-TGTGAGTGC-TT---T----------G-CGGACAAATA-------TTTGTTTAGA---------------------ATTAACCAAG----TTC---------CCCTCCACAGTCCACTGCTTGCGGCATCAACAAGTTCTTCATCTCCATA----------AACTTGATTCTCTGTGTGGTCATCAGCGTGATCTCGATTCTGCCGGCTGTCCAGGAGCGCTTGCACCACTCAGGACTGTTGCAGAGCTCTCTGGTTACCCTGTACACGGTCTACTTGACCTGGTCGGCTGTGGCCAACAACCCGGGTACGCTTCAGTAGCCAAAA-TAGC------ATCTTC-----CACAAAATAAAC--AT------GAATTT-----------------------------------CTTGCAGAGAAAGAATGCAATCCCGGAATGTTTGGTCTGATGGAGAGC-----CTAAGCAAC
droBip1 scf7180000395148:10114-10504 - TATCTTATCGTTGACTGGGATTACACTGCTCTATATCTACTTCACCAC-TGTGAGTGC-GA---C----------A-TGGTCATATA-------TTTGTTTAGG---------------------ATTAACCATT----CTC---------CCTTTAACAGTCCACTGCTTGCGGCATCAACAAGTTCTTCATTTCCATA----------AATTTGATTCTTTGCGTGGCCATTAGCGTGATCTCGATCTTGCCGGCTGTCCAGGAGCGTTTGCCTCACTCTGGATTGTTGCAGAGCTCTTTGGTTACCCTGTATACCGTTTACTTGACTTGGTCTGCTGTGGCCAACAACCCAGGTAAGATTGTT------AAG-----CCTGAAGACATC-----TATAAAACTAAT--AT------AAACCT-----------------------------------CTTGCAGAGAAAGAATGCAATCCCGGAATGTTTGGGCTGATGGAGAGC-----TTTAGCAAC
dp5 XR_group8:2095588-2095933 + TATCTTATCGCTGACGGGCATTACTCTGCTGTATATCTACTTTACCAC-GGTAAGACG-G----CACGAAAGCGTT-TGCT----TATCTA---TTTGC-----ATTCT-G--------------ATACGCGA------CTT---------TCCTTTCCAGTCCACTGGCTGCGGCATCAACAAGTTCTTCATCTCTATT----------AATCTGATCTTCTGCCTGGTCATCAGCGTCATCTCTATACTGCCGGCTGTCCAGGAGCGTCTTCCCCACTCGGGCCTGCTGCAGAGCTCTCTTGTCACCCTGTACACTGTCTACTTGACCTGGTCGGCTGTGGCTAACAATCC----------------------------------------------------------------------------------------------------------------AGAAAAGGCCTGCAATCCGGGAATGTTTGGCCTTATGGAAGGA-----TTCGGAAAT
droPer2 scaffold_24:964260-964605 - TATCTTATCGCTGACGGGCATTACTCTGCTGTATATCTACTTTACCAC-GGTAAGACG-G----CACGAAAGCGTT-TGCT----TATCTA---TTTGC-----ATTCT-G--------------ATACGCGA------TTT---------TCCTTTCCAGTCCACTGGCTGCGGCATCAACAAGTTCTTCATCTCTATT----------AATCTGATCTTCTGCCTGGTCATCAGCGTCATCTCTATACTGCCGGCTGTCCAGGAGCGTCTTCCCCACTCGGGCCTGCTGCAGAGCTCTCTTGTCACCCTGTACACTGTCTACTTGACCTGGTCGGCTGTGGCTAACAATCC----------------------------------------------------------------------------------------------------------------AGAGAAGGCCTGCAATCCGGGAATGTTTGGCCTGATGGAAGGA-----TTCGGAAAT
droWil2 scf2_1100000004511:8470784-8470983 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGATCCTCTGTCTGGCTATCAGTATCATATCGGTTTTGCCCGCTGTCCAGGAACGTCTGCCTCATTCGGGTCTCTTGCAGAGTTCATTGGTCACTTTGTATACCGTCTATTTGACTTGGTCGGCTGTGGCCAATAATCCT----------------------------------------------------------------------------------------------------------------GAAAAGGAATGCAATCCGGGAATGTTTGGCGCAATGCAAGGCAATCTATCGACAAC
droVir3 scaffold_13049:1399871-1400288 + CATAGCCTCCCTGACGGGCATAACTCTCCTCTACATCTACTTCACCAC-AGTCTGTAT-TCCATT-T-----TATATTG-----ATA-------TTCATCTAGC-AA-AC-A-------------A----T-ACGTTTTCTT---------TGATTTGCAGTCGACGGGCTGCGGCATCAACAAGTTCTTCATCTCGATT----------AATCTGATATTCTGCCTGGTTATCAGCATTTTGTCTGTGCTGCCCGCGGTGCAGGAACGCTTGCCCCACTCGGGACTGTTGCAAAGCTCGCTGGTGACATTGTACACCATTTACTTGACCTGGTCCGCTGTGGCCAACAATCCGGGTTTGTCT-----------TG----AATGAAGCAAAC-------CACAATTTGT--GC------GTTTTA-----T---GCCCTCTCGTCTCTCGTCTCTCTCC-CCCGCAGAAAAGGCCTGCAATCCGGGCATGTTTGGACTCATGGAGGGC-----TTGCCCAAT
droMoj3 scaffold_6654:2429659-2430071 - TATTGCTTCCCTCACTGGCATCACTTTGCTTTACATCTACTTTACCAC-AGTGCGTAT-AT----------------GAAT----TAATTA---CA----T-----A-T-ACTATATATACTAAAATTAACCTTT--CTCTT---------TCTCTTCTAGTCGACTGGCTGCGGCATCAACAAGTTCTTCATCTCCATA----------AATCTAATACTCTGCTTGGTCATCAGCATTTTGTCGGTGTTGCCGGCTGTGCAGGAACGTTTGCCACATTCGGGTTTGTTGCAGAGCTCATTAGTTACCTTGTACACCGTCTACTTGACCTGGTCCGCTGTGGCCAATAATCCGGGTTGGTCT---------ACTG----ATTGAAGCA--CTCC-----------------TATCTTTTCAAGTTTTTAATGGC-TGT--C--------A---TTTTG-CTTATAGAGAAGGCCTGCAATCCGGGCATGTTTGGCTTGATGGATGAA-----TTGCCCAAT
droGri2 scaffold_15110:2510403-2510815 + TATTGCCTCCTTGACGGGCATTACTCTACTCTATATCTACTTTACCAC-TGTATGCGT-AG---A-T-----TGTACTAGT----TACTA----------------G-T-TAATCTTATATCTAAACTAAT--TT----CTC---------ACTGTTTCAGTCCACTGGCTGCGGCATCAACAAGTTCTTTATCTCGATT----------AATCTGATACTCTGTTTGGTTGTCAGCATTCTGTCTGTGTTGCCGGCGGTGCAGGAACGTTTGCCCCACTCGGGCTTGCTGCAAAGTTCGCTCGTCACTTTGTACACCATCTACTTGACCTGGTCCGCTGTGGCCAACAATCCGGGTTAGCCT-----------TG----AACTAGGCA------------TCATTTGTAT-T------T--AAT--TTAATGAT-TATTTTTG------TATCTGATA-CTCACAGAGAAGGCCTGCAATCCGGGCATGTTTGGGTTGATGGATGGT-----CTGCATAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TATCTTATCGCTGACTGGGATTACCTTGCTTTATATCTACTTCACCACCCGTGAGTGT-CG---T-T-----TCTTCTGCT----TG----------------------------------------------------------------------------------------------------------------ANNNNNNNNNNAATCTCATATTCTGTCTAGCGATCAGCGTTATTTCGATTTTGCCAGCCGTGCAGGAACGCTTGCCCCATTCCGGTCTATTGCAGAGCTCCTTGGTTACCTTATACACTGTGTATTTGACCTGGTCCGCAGTGGCCAACAACCCTGGTAGGA-----------AAA-T------------AGC-----GCCAGAGTCTGT--AT------GAATTG-----C---T-CACTTGGTTTTTACTGTTTTTAA-CCCATAGAAAAAGAATGCAATCCTGGTATGTTCGGTATGATGGAGGGA-----TTCGGCAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................TCCGGTCTATTGCAGAGCTCCTTGGT.........................................................................................................................................................................................................................2621.00202000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGGA-----TTCGGCT..1720.50100000100000
..........................................................................................................................................................................................................................................................................................GGTCTATTGCAGAGCTCCTTGGT.........................................................................................................................................................................................................................2320.50100000010000
.....................................................................................................................................................................................................................................................................................................................................TGACCTGGTCCGCAGTGGC..................................................................................................................................................................................1920.50101000000000
.......................................................................................................................................................................................................................................................................GGAACGCTTGCCCCATTCCGGT.............................................................................................................................................................................................................................................2220.50101000000000
.....................................................................................................................................................................................................................CTCATATTCTGTCTAGCGATCAGC.............................................................................................................................................................................................................................................................................................2420.50101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGAGGGA-----TTCGGCA..1920.50100000010000
...................................................................................................................................................................................................................ATCTCATATTCTGTCTAGC....................................................................................................................................................................................................................................................................................................1920.50101000000000
.............................................................................................................................................................................................................................................................CAGCCGTGCAGGAACGCTT..........................................................................................................................................................................................................................................................1920.50100000010000
..................................................................................................................................................................................................................................................................................................GCAGAGCTCCTTGGTTACCTT...................................................................................................................................................................................................................2120.50110000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAATCCTGGTATGTTC.............................2020.50100000010000
........................................................................................................................................................................................................................ATATTCTGTCTAGCGATCAGCGTT..........................................................................................................................................................................................................................................................................................2420.50100000100000
...............................................................................................................................................................................................................................................................................TGCCCCATTCCGGTCTATTGCAGAGCTC...............................................................................................................................................................................................................................2820.50110000000000
...................................................................................................................................................................................................................ATCTCATATTCTGTCTAGCGATCAGC.............................................................................................................................................................................................................................................................................................2620.50101000000000
..........................................................................................................................................................................................................................................................................................GGTCTATTGCAGAGCTCCTTGGTTACC.....................................................................................................................................................................................................................2720.50101000000000
.......................................................................................................................................................................................................................CATATTCTGTCTAGCGATCAGC.............................................................................................................................................................................................................................................................................................2220.50101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAATGCAATCCTGGTATGTT..............................2520.50100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGGA-----TTCGGCAAT1920.50100000010000
...................................................................................................................................................................................................................................................TCGATTTTGCCAGCCGTGCAGGA................................................................................................................................................................................................................................................................2320.50100000010000
..................................................................................................................................................................................................................................................................................................................................ATTTGACCTGGTCCGCAGT.....................................................................................................................................................................................1920.50101000000000
.............................................................................................................................................................................................................................................GTTATTTCGATTTTGCCAGC.........................................................................................................................................................................................................................................................................2020.50100000010000
................................................................................................................................................................................................................................................................................GCCCCATTCCGGTCTATTGCAGAGCTCCT.............................................................................................................................................................................................................................2920.50110000000000
.....................................................................................................................................................................................................................................................................................ATTCCGGTCTATTGCAGAGCTCC..............................................................................................................................................................................................................................2320.50110000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCTGGTATGTTCGGT..........................2020.50100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTCGGTATGATGGA..................1920.50100000010000
........................................................................................................................................................................................................................................................TTTGCCAGCCGTGCAGGAACGCTTGCCCC.....................................................................................................................................................................................................................................................2920.50100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCGGTATGATGGAG.................1820.50100000010000
.............................................................................................................................................................................................................................................................................................CTATTGCAGAGCTCCTTGG..........................................................................................................................................................................................................................1920.50110000000000
.................................................................................................................................................................................................................................................................CGTGCAGGAACGCTTGCCCCATTCCGGT.............................................................................................................................................................................................................................................2820.50101000000000
................................................................................................................................................................................................................................................................................................................TTACCTTATACACTGTGTATTTGACCTG..............................................................................................................................................................................................2820.50101000000000
.......................................................................................................................................................................................................................................................TTTTGCCAGCCGTGCAGGAACGCTTGC........................................................................................................................................................................................................................................................2720.50101000000000
TATCTTATCGCTGACTGGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAATCCTGGTATGTTCGGT..........................2220.50100000010000
.......................................................................................................................................................................................................................................................................................TCCGGTCTATTGCAGAGCTCC..............................................................................................................................................................................................................................2120.50100100000000
droEre2
CATCTTATCGCTGACTGGAATTACCCTGCTTTATATCTACTTCACCAC-CGTGAGTGC-CG---T-T-----TCCTCTGCT----TGTTTG---CT----T-GC-AA-TT-A-------------A----C-----------ATTATTTGTATATTTCTAGAGTACTGGCTGCGGCATCAACAAGTTCTTCATTTCCATC----------AACCTCATATTCTGTTTAGCGATCAGTGTTATTTCGATTTTGCCAGCCGTGCAGGAACGCTTGCCCCATTCTGGTTTATTGCAGAGCTCCTTGGTTACCTTATACACGGTGTATCTAACCTGGTCCGCAGTGGCCAACAATCCGGGTAGGA-----------AAA-C------------AGC-----GGCAAACTCTGT--AT------GCATTT----CT---C-ACTTGA--------TTTAATGAA-TCCATAGAAAAAGAATGCAATCCTGGCATGTTCGGCATGATGGAGGGA-----TTCGGCAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGGA-----TTCGGCAAT1914.0041000300
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGATGGAGGGA-----TTCGGC...2112.0020000110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAATCCTGGCATGTTCGGCA.........................2412.0022000000
..................................................................................................................................................................................................................................................................................................GCAGAGCTCCTTGGTTACCTT...................................................................................................................................................................................................................2111.0011000000
..................................................................................................................................................................................................................AACCTCATATTCTGTTTAGCGATCAGT.............................................................................................................................................................................................................................................................................................2711.0011000000
........................................................................................................................................................................................GTTCTTCATTTCCATC----------AACCTCATATT.............................................................................................................................................................................................................................................................................................................2711.0011000000
.......................................................................................................................................................................................................................................ATCAGTGTTATTTCGATTTTGC.............................................................................................................................................................................................................................................................................2211.0010000010
...........................................................................................................................................................................................................................................................................................................................ACGGTGTATCTAACCTGGTCC..........................................................................................................................................................................................2111.0011000000
.........GCTGACTGGAATTACCCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.........................................................................................................................................................................................................................................................................................TGGTTTATTGCAGAGCTCCTTGGT.........................................................................................................................................................................................................................2411.0011000000
.............................................................................................................................................................................................................................................GTTATTTCGATTTTGCCAGCCGTGCA...................................................................................................................................................................................................................................................................2611.0010000100
..................................................................................................................................................................................................................................................................................................GCAGAGCTCCTTGGTTACCTTATA................................................................................................................................................................................................................2411.0010000100
.................................................................................................................................................................AGTACTGGCTGCGGCATCA......................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..........................................................................................................................................................................................................................................................................................GGTTTATTGCAGAGCTCCTTGG..........................................................................................................................................................................................................................2211.0011000000
................................................................................................................................................................................................................................................ATTTCGATTTTGCCAGCCGTGCAGGA................................................................................................................................................................................................................................................................2611.0010000100
..............................................................................................................................................................................................................................................................AGCCGTGCAGGAACGCTTGCCCCATT..................................................................................................................................................................................................................................................2611.0010000010
......................................................................................................................................................................................................................................GATCAGTGTTATTTCGAT..................................................................................................................................................................................................................................................................................1811.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAATCCTGGCATGTTCGGCATGATG....................2711.0010000010
......ATCGCTGACTGGAATTACCCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.........................................................................................................................................................................................................................................................................................TGGTTTATTGCAGAGCTCCT.............................................................................................................................................................................................................................2011.0010000100
..........................................................................................................................................................................................................................................................TGCCAGCCGTGCAGGAACGCTT..........................................................................................................................................................................................................................................................2211.0011000000
..................................................................................................................................................................................................................................................TTCGATTTTGCCAGCCGTGCAGGAACGCT...........................................................................................................................................................................................................................................................2911.0011000000
.................................................................................................................................................................................................................................................................................................................TACCTTATACACGGTGTATCTAACCT...............................................................................................................................................................................................2611.0010100000
..................................................................................................................................................................................CAACAAGTTCTTCATTTCCAT...................................................................................................................................................................................................................................................................................................................................2111.0010000010
............GACTGGAATTACCCTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
.................................................................................................................................................................................................................................................................CGTGCAGGAACGCTTGCCCCATTCT................................................................................................................................................................................................................................................2511.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGAGGGA-----TTCGGCAAT2111.0010000100
.....................................................................................................................................................................................................................CTCATATTCTGTTTAGCGATCAGT.............................................................................................................................................................................................................................................................................................2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCGGCATGATGGAGG................1911.0011000000
...............................................................................................................................................................................................................................................................................................ATTGCAGAGCTCCTTGGTTACC.....................................................................................................................................................................................................................2211.0010000100
.......................................................................................................................................................................................................................................................................................................................ATACACGGTGTATCTAACCTGGT............................................................................................................................................................................................2311.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAATGCAATCCTGGC...................................1911.0010100000
..........................................................................................................................................................................................TCTTCATTTCCATC----------AACCTCATATTCT...........................................................................................................................................................................................................................................................................................................2711.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATGCAATCCTGGCATGTTCGGC..........................2711.0011000000
..........................................................................................................................................................................................TCTTCATTTCCATC----------AACCTCATATTCTGT.........................................................................................................................................................................................................................................................................................................2911.0010000100
...........................................................................................................................................................................................................................................................................................GTTTATTGCAGAGCTCCTTGGTTACCTT...................................................................................................................................................................................................................2811.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCATGATGGAGGGA-----TTCGGCAAT2711.0010000100
....TTATCGCTGACTGGAATTACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.............................................................................................................................................................................................................................................GTTATTTCGATTTTGCCAGCCC.......................................................................................................................................................................................................................................................................2211.0011000000
..................................................................................................................................................................................................................AACCTCATATTCTGTTTAGCGATC................................................................................................................................................................................................................................................................................................2411.0010000100
....................................................................................................................................................................................................................................................................................................AGAGCTCCTTGGTTACCTT...................................................................................................................................................................................................................1911.0011000000
......ATCGCTGACTGGAATTACCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCTGGCATGTTCGG...........................1911.0011000000
...........................................................................................................................................................................................................................................................................CGCTTGCCCCATTCTGGTTTATTGC......................................................................................................................................................................................................................................2511.0011000000
droSec2
TATCTTATCGCTGACTGGAATTACCTTGCTTTATATCTACTTCACCAC-CGTGAGTGT-CG---T-T-----TCTATGGCC----TATTTA---CT----TTGT-AA-TT-A-------------G----C-----------ATTGTGTTTATATTTCTAGAGCACTGGCTGCGGCATCAACAAGTTCTTCATCTCCATC----------AATCTGATATTCTGCCTGGCGATCAGCGTCATTTCGATTCTACCAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTATTGCAGAGCTCCCTGGTTACCTTGTACACGGTGTATCTAACCTGGTCCGCAGTGGCCAACAATCCTGGTAGGA-----------AAA-T------------AAC-----TCCAGAACCTAT--AT------GAATAT-----C---T-TATTGTGT------TCTTATGAA-TTCATAGAGAAAGAATGCAATCCTGGCATGTTTGGCATGATGGAGGGA-----TTCGGCAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................GTCATTTCGATTCTACCAGCTGTG.....................................................................................................................................................................................................................................................................2412.0020020
......................................................................................................................................................................................................................................................................................................................TGTACACGGTGTATCTAACCTGG.............................................................................................................................................................................................2311.0010001
..................................................................................................................................................................................................................................................TTCGATTCTACCAGCTGTG.....................................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................................................................................................................................................................CTACCAGCTGTGCAGGAACGCT...........................................................................................................................................................................................................................................................2211.0011000
..........................................................................................................................................................................................................................ATTCTGCCTGGCGATCAGC.............................................................................................................................................................................................................................................................................................1911.0010010
...CTTATCGCTGACTGGAATTACCTTGCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
.......................................................................................................................................................................................................................................................TTCTACCAGCTGTGCAGGA................................................................................................................................................................................................................................................................1911.0010010
............................................................................................................................................................................................................................TCTGCCTGGCGATCAGCGTC..........................................................................................................................................................................................................................................................................................2011.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCATGATGGAGGGA-----TTCGGC...2511.0011000
.............................................................................................................................................................................................................................................GTCATTTCGATTCTACCAGCTGTGC....................................................................................................................................................................................................................................................................2511.0011000
.............................................................................................................................................................................................................................................GTCATTTCGATTCTACCAGCTGTGCAG..................................................................................................................................................................................................................................................................2711.0011000
..........................................................................................................................................................................................................................ATTCTGCCTGGCGATCAGCGTCATTTC.....................................................................................................................................................................................................................................................................................2711.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCATGATGGAGGGA-----TTC......2111.0010001
.......................................................................................................................................................................................................................................................TTCTACCAGCTGTGCAGGAACGCTTGC........................................................................................................................................................................................................................................................2711.0011000
...CTTATCGCTGACTGGAATTACCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.......................................................................................................................................................................................................................................................................................................GCTCCCTGGTTACCTTGTACACGGT..........................................................................................................................................................................................................2511.0010100
....................................................................................................................................................................................................................................................CGATTCTACCAGCTGTGCAGGAAC..............................................................................................................................................................................................................................................................2411.0010010
..............................................................................................................................................................................................................................................................AGCTGTGCAGGAACGCTTGC........................................................................................................................................................................................................................................................2011.0010001
.......................................................................................................................................................................................................................GATATTCTGCCTGGCGATCA...............................................................................................................................................................................................................................................................................................2011.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGGCATGATGGAGGG...............2011.0010100
droSim2
TATCTTATCGCTGACTGGAATTACCATGCTTTATATCTACTTCACCAC-CGTGAGTGT-CG---T-T-----TCTATGGCC----TGTTTA---CT----TTGT-AA-TT-A-------------C----C-----------ATTGTGTTTATATTTCTAGAGCACTGGCTGCGGCATCAACAAGTTCTTCATCTCCATC----------AATCTCATATTCTGTCTGGCGATCAGCGTCATTTCGATTCTGCCAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTACTGCAGAGCTCCCTGGTTACCTTGTACACGGTGTATCTAACCTGGTCCGCAGTGGCCAACAATCCTGGTAGGA-----------AAA-T------------ACC-----TCCAGAACCTAT--AC------GAATAT-----C---T-CATTTTGT------TCTTACGAA-TTCATAGAGAAAGAATGCAATCCTGGCATGTTTGGCATGATGGAGGGA-----TTCGGCAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................C----------AATCTCATATTCTGTCTGGC....................................................................................................................................................................................................................................................................................................2112.00200200000000000000
...........................................................................................................................................................................................................................................................................................GCCTACTGCAGAGCTCCC.............................................................................................................................................................................................................................1812.00200200000000000000
...CTTATCGCTGACTGGAATTACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00211000000000000000
........................................................................................................................................................................................................................ATATTCTGTCTGGCGATCAGC.............................................................................................................................................................................................................................................................................................2112.00202000000000000000
.............................................................................................................................................................................................................................................GTCATTTCGATTCTGCCAGCTGTGC....................................................................................................................................................................................................................................................................2511.00101000000000000000
.......................................................................................................................................................................................................................................................................................TCTGGCCTACTGCAGAGC.................................................................................................................................................................................................................................1811.00110000000000000000
............................................................................................................................................................................................................................................................CCAGCTGTGCAGGAACGCTTGCCCCA....................................................................................................................................................................................................................................................2611.00100000000000001000
......................................................................................................................................................................TGGCTGCGGCATCAACAAGTTCTTCATC........................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.....................................................................................................................................................................................................................................................................................ATTCTGGCCTACTGCAGAGCTCC..............................................................................................................................................................................................................................2311.00110000000000000000
..............................................................................................................................................................................................................................TGTCTGGCGATCAGCGTCATTTCGA...................................................................................................................................................................................................................................................................................2511.00100010000000000000
..........................................................................................................................................................................................................................................................TGCCAGCTGTGCAGGAACGCTTG.........................................................................................................................................................................................................................................................2311.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAATGCAATCCTGGCAT.................................2111.00100100000000000000
...............................................................................................................................................................................................................................................CATTTCGATTCTGCCAGC.........................................................................................................................................................................................................................................................................1811.00100100000000000000
..........................................................................................................................................................................TGCGGCATCAACAAGTTCTTCATCTCC.....................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................AACCTGGTCCGCAGTGGC..................................................................................................................................................................................1811.00100100000000000000
........................................................................................................................................................................................................................ATATTCTGTCTGGCGATC................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..TCTTATCGCTGACTGGAATTACCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
.........GCTGACTGGAATTACCATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
..........................................................................................................................................................................TGCGGCATCAACAAGTTCTTCATCTC......................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................TGGCCTACTGCAGAGCTCCCTGGTT........................................................................................................................................................................................................................2511.00110000000000000000
.......................................................................................................................................................................................................................................................TTCTGCCAGCTGTGCAGGAACGCT...........................................................................................................................................................................................................................................................2411.00100000000000010000
.......................................................................................................................................................................................................................................................................................TCTGGCCTACTGCAGAGCT................................................................................................................................................................................................................................1911.00110000000000000000
.................................................................................................................................................................................................................................................................................................TGCAGAGCTCCCTGGTTACCTTGTAA...............................................................................................................................................................................................................2611.00100000001000000000
...........TGACTGGAATTACCATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
dm3
TATCTTATCGCTGACTGGAATTACCTTGCTTTATATCTACTTCACCAC-CGTGAGTGT-CG---T-T-----TCTATGGCT----TATTTA---CT----TTGT-AA-TT-A-------------G----C-----------ATTGTTTTTATATTTGTAGAGTACTGGCTGCGGCATCAACAAGTTCTTCATCTCCATC----------AATCTCATATTCTGTCTGGCGATTAGCGTCATTTCGATTCTGCCAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTACTGCAGAGCTCCCTGGTTACCTTGTACACGGTGTATCTAACCTGGTCGGCAGTGGCCAACAATCCTGGTAGGA-----------AAA-T------------GAA-----TCCAGAACCC-----TATATGTGTATAT-----C---T-CATTTGGT------TGTTTTGAA-TCAACAGAGAAAGAATGCAATCCAGGCATGTTTGGCATGATGGAGGGA-----TTCGGCAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droEug1
TATCTTATCGTTGACTGGGATTACGCTGCTTTATATCTACTTTACCAC-TGTGAGATT-AA---A-A-----TGTTAGGTT----GTATTG---CT----TGG-TAC-T-TA-------------A----------------GTAATTTCCATATTTTTAGAGTACTGGATGCGGCATCAACAAGTTCTTCATCTCCATT----------AATCTGATATTCTGTTTGGTGATCAGTGTCATATCGATTTTACCAGCTGTCCAGGAACGTTTGCCACATTCCGGTTTATTGCAGAGCTCCCTGGTTACCTTATACACGGTTTATCTTACCTGGTCCGCTGTGGCCAACAATCCGGGTAGGA-----------AAG-C------------CTC-----TTTAAAATCAAT--GTACATGTG--AAG-----A---T-TATCGTTT------TTTTTTAAA-CCCTCAGAAAAGGAATGCAATCCTGGAATGTTCGGAATGATGGAGGGA-----TTCGGAAACSizeHit CountTotal NormTotal
No Reads
droBia1
TATCTTATCGCTGACTGGGATTACCCTGCTTTATATCTATTTCACCAC-TGTGAGTTG-AT---A-T-----TGTCCAGTT----TATTAT---ATTGC-----ATTGC-TG-------------A----------------GTGTTTTATGTATTTCTAGAGCACCGGCTGCGGCATCAACAAGTTCTTTATCTCCATC----------AATCTCATATTCTGTTTGGCGATCAGCGTGATTTCGGTTCTGCCGGCTGTCCAGGAGCGTTTGCCCCACTCGGGCTTGTTGCAGAGCTCCTTGGTTACCTTGTACACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTAGGA-----------GAA-A----------CCCAC-----CGCAAAATGTGT--AT------CAATGC-----C---T-GATTTC--------CCT---TCA-TCCACAGAAAAAGAATGCAATCCTGGCATGTTCGGCATGATGGAGGGA-----TTCGGCAATSizeHit CountTotal NormTotal
No Reads
droTak1
TATCTTATCGCTGACTGGAATTACCATGCTTTATATCTACTTTACCAC-TGTGGGTTG-AT---T-T-----TACTAAGCC----TTCTTAAGACC----TTTT-A-------------------A----------------TTGATATCTTTATTTTTAGAGCACCGGCTGCGGCATCAACAAGTTCTTTATCTCCATT----------AATCTCATCTTCTGCCTGGTGATCAGCGTCATTTCGGTTTTGCCGGCTGTCCAGGAGCGTCTGCCCCATTCGGGCTTGTTGCAGAGCTCCTTGGTTACCCTATACACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTACAA-----------AAA-A------------TAC-----ATAAAAATATAT--AT------ATCTTA-----C---T-AATTTC--------TTTACCCCA-CCTTCAGAAAAAGAATGCAATCCTGGAATGTTTGGCATGATGGAGGGA-----TTCGGCAATSizeHit CountTotal NormTotal
No Reads
droEle1
TATCTTATCGCTGACTGGGATTACACTGCTTTATATCTACTTTACCAC-TGTGAGTGG-AG---A-T-----TGTCATGCT----TATTTG---TT----TGG-TTT-T-TA-------------A----------------CTCTTCTGGTTTTTTTTAGAGTACTGGCTGCGGCATCAACAAGTTCTTTATCTCCATT----------AATCTGATCCTTTGTTTGATGATCAGCGTTATTTCGATTTTGCCAGCTGTGCAGGATCGTTTGCCCCATTCTGGATTATTGCAGAGCTCTTTGGTTACCTTATACACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTAGGA-----------AAA-C------------TGC-----TGTAAAATGTGT--AG------AAAATT----TC---T-AATTTA--------TATTATGAA-TCCATAGAAAAAGAATGCAATCCTGGAATGTTTGGCATGATGGAGGGT-----TTCGGCAATSizeHit CountTotal NormTotal
No Reads
droRho1
TATCTTATCGCTGACTGGGATTACTCTGCTTTATATCTACTTCACCAC-TGTGAGTGT-AA---A-T-----TGTGAAGCT----AATTTG---TTTGC-----TTTTT-TA-------------A----------------CTGATGTCTTTATTGTTAGAGCACTGGCTGCGGCATCAACAAGTTCTTTATCTCCATT----------AATCTCATCTTTTGTTTGGTGATCAGCGTTATATCGATTTTGCCAGCTGTGCAGGAGCGTTTGCCCCATTCCGGTCTATTGCAGAGCTCCTTGGTTACCTTATACACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTAGGC-----------AAAAC------------TAC-----GGCAAAATATATAA-T------A--TAG--TTTA---T-AATTTA--------TCTTGTAAA-CCCATAGAAAAAGAATGCAATCCCGGAATGTTTGGAATGATGGAGGGT-----TTCGGCAATSizeHit CountTotal NormTotal
No Reads
droFic1
TATCTTATCGCTGACTGGGATTACTCTGCTTTATATCTACTTTACCAC-TGTGAGTTT-AA---A-T-----AATCAAGAT----TATTTG---CTTGT-----TT--T-GA-------------A-A--T-----------GTAACCTCTGCATTTTTAGAGTACCGGCTGCGGCATCAACAAGTTCTTTATCTCTATA----------AATCTCATCCTATGTTTGGTGATCAGCGTTATTTCGATTTTGCCAGCTGTGCAGGAGCGTTTGCCACATTCCGGTTTATTGCAGAGCTCCTTGGTCACCTTATATACGGTTTATCTGACCTGGTCCGCAGTGGCCAACAATCCGGGTATGA-----------AAT-G------------TAA-----CACAAAATATGT--AG------AAATCG-----C---T-TATATC--------TCTTGTAAACCCTTTAGAAAAGGAATGCAATCCTGGAATGTTTGGCTTGATGGACGGT-----TTTGGAAATSizeHit CountTotal NormTotal
No Reads
droKik1
TATCTTATCGCTGACCGGGATTACGCTGCTGTACATCTACTTTACCAC-TGTGAGTGGGAG---T-T-----TATAAGGCT----TATTTG---TT----ATTT-AC-TC-A-------------A----G--------------ATTTTTATATTTGTAGAGCACTGGATGCGGCATCAACAAGTTCTTCATCTCTATC----------AACCTCATACTCTGCCTGGTAATTAGCGTGATCTCGATCTTGCCCGCTGTTCAGGAGCGTTTGCCACACTCCGGCCTGCTGCAGAGCTCCCTGGTCACCCTGTACACGATCTATTTGACCTGGTCCGCTGTGGCCAATAATCCGGGTAGGC-----------AAT-C---CTTGGAGGA--ATCCTGGTTAAAACG----------------TCG--TTGA-----AATTAA--------ATCTATAAA-CTTCCAGAGAAGGAATGCAATCCTGGCATGTTCGGCTTGATGGATGGC-----GTTGGCAATSizeHit CountTotal NormTotal
No Reads
droAna3
CATCTTATCGTTGACTGGGATTACGCTGCTCTATATCTACTTCACCAC-TGTGAGTGC-TT---T----------G-CGGACAAATA-------TTTGTTTAGA---------------------ATTAACCAAG----TTC---------CCCTCCACAGTCCACTGCTTGCGGCATCAACAAGTTCTTCATCTCCATA----------AACTTGATTCTCTGTGTGGTCATCAGCGTGATCTCGATTCTGCCGGCTGTCCAGGAGCGCTTGCACCACTCAGGACTGTTGCAGAGCTCTCTGGTTACCCTGTACACGGTCTACTTGACCTGGTCGGCTGTGGCCAACAACCCGGGTACGCTTCAGTAGCCAAAA-TAGC------ATCTTC-----CACAAAATAAAC--AT------GAATTT-----------------------------------CTTGCAGAGAAAGAATGCAATCCCGGAATGTTTGGTCTGATGGAGAGC-----CTAAGCAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................GATCTCGATTCTGCCGGCTGT......................................................................................................................................................................................................................................................................2114.004300010
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGTGGCCAA...............................................................................................................................................................................2713.003100002
...........................................................................................................................................................................................................................................................................................................TCTGGTTACCCTGTACACGGT..........................................................................................................................................................................................................2112.002200000
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGTGGC..................................................................................................................................................................................2412.002010010
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGTG....................................................................................................................................................................................2212.002200000
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGTGGCC.................................................................................................................................................................................2512.002100010
.....................................................................................................................................................................................................................................................................................ACTCAGGACTGTTGCAGAGCT................................................................................................................................................................................................................................2112.002000011
..........................................................................................................................................................................................................................................................................GCGCTTGCACCACTCAGGACTGTTGCA.....................................................................................................................................................................................................................................2712.002200000
........................................................................................................................................................................................................................................................................................................CTCTCTGGTTACCCTGTACACGGTCTACT.....................................................................................................................................................................................................2911.001100000
................................................................................................................................................................................................................................................ATCTCGATTCTGCCGGCTGTC.....................................................................................................................................................................................................................................................................2111.001000010
......................................................................................................................................................................................................................................................................AGGAGCGCTTGCACCACTCAGGAC............................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGTGGCCAAC..............................................................................................................................................................................2811.001100000
............................................................................................................................................................................................................................................................CCGGCTGTCCAGGAGCGCTTGCACC.....................................................................................................................................................................................................................................................2511.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCCGGAATGTTTGGTCTGATG....................2511.001000010
.......................................................................................................................................................................................................................GATTCTCTGTGTGGTCATCAGCGTGAT........................................................................................................................................................................................................................................................................................2711.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCTGATGGAGAGC-----CTAAGC...2511.001000010
....................................................................................................................................................................................................................................................................................................................................TTGACCTGGTCGGCTGTGG...................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................TGCAGAGCTCTCTGGTTACC.....................................................................................................................................................................................................................2011.001000010
...............................................................................................................................................................................................................................................GATCTCGATTCTGCCGGCTGC......................................................................................................................................................................................................................................................................2111.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCCGGAATGTTTGGTCTGATGGA..................2811.001010000
.......................................................................................................................................................................................................................................................TTCTGCCGGCTGTCCAGGA................................................................................................................................................................................................................................................................1911.001000100
............................................................................................................................................................................................................................................................................................ACTGTTGCAGAGCTCTCTGGTTACCCT...................................................................................................................................................................................................................2711.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTGGTCTGATGGA..................1811.001000001
...........................................................................................................................................................................................................................................................GCCGGCTGTCCAGGAGCGCTTGCACC.....................................................................................................................................................................................................................................................2611.001100000
......ATCGTTGACTGGGATTACGCTGCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..........................................................................................................................................................................TGCGGCATCAACAAGTTCTTC...........................................................................................................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................................TTGACCTGGTCGGCTGTGGCC.................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................GATCTCGATTCTGCCGGCT........................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................................................GACTGTTGCAGAGCTCTCTGGT.........................................................................................................................................................................................................................2211.001001000
..........................................................................................................................................................................................................................................................................GCGCTTGCACCACTCAGGA.............................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................................ACTCAGGACTGTTGCAGAGCTCTCTGG..........................................................................................................................................................................................................................2711.001100000
............................................................................................................................................................................................................................................................................................................CTGGTTACCCTGTACACGGT..........................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................GGACTGTTGCAGAGCTCTCC............................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................CTTGATTCTCTGTGTGGTCATCAGCGTG..........................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................................................................TGCCGGCTGTCCAGGAGCGCTTGCAC......................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................................................................................................GCGCTTGCACCACTCAGGACT...........................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATGGAGAGC-----CTAAGCA..2011.001100000
.........GTTGACTGGGATTACGCTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................CCAGGAGCGCTTGCACCACT..................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCTGATGGAGAGC-----CTA......1911.001000010
..................................................................................................................................................................................................................................................................................................................................ACTTGACCTGGTCGGCTGTGGCC.................................................................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................GATCTCGATTCTGCCGGCTGTC.....................................................................................................................................................................................................................................................................2211.001100000
............................................................................................................................................................................................................................................................................................ACTGTTGCAGAGCTCTCTGGTTACCCC...................................................................................................................................................................................................................2711.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATGGAGAGC-----CTAAGCAAC2311.001000001
droBip1
TATCTTATCGTTGACTGGGATTACACTGCTCTATATCTACTTCACCAC-TGTGAGTGC-GA---C----------A-TGGTCATATA-------TTTGTTTAGG---------------------ATTAACCATT----CTC---------CCTTTAACAGTCCACTGCTTGCGGCATCAACAAGTTCTTCATTTCCATA----------AATTTGATTCTTTGCGTGGCCATTAGCGTGATCTCGATCTTGCCGGCTGTCCAGGAGCGTTTGCCTCACTCTGGATTGTTGCAGAGCTCTTTGGTTACCCTGTATACCGTTTACTTGACTTGGTCTGCTGTGGCCAACAACCCAGGTAAGATTGTT------AAG-----CCTGAAGACATC-----TATAAAACTAAT--AT------AAACCT-----------------------------------CTTGCAGAGAAAGAATGCAATCCCGGAATGTTTGGGCTGATGGAGAGC-----TTTAGCAACSizeHit CountTotal NormTotal
No Reads
dp5
TATCTTATCGCTGACGGGCATTACTCTGCTGTATATCTACTTTACCAC-GGTAAGACG-G----CACGAAAGCGTT-TGCT----TATCTA---TTTGC-----ATTCT-G--------------ATACGCGA------CTT---------TCCTTTCCAGTCCACTGGCTGCGGCATCAACAAGTTCTTCATCTCTATT----------AATCTGATCTTCTGCCTGGTCATCAGCGTCATCTCTATACTGCCGGCTGTCCAGGAGCGTCTTCCCCACTCGGGCCTGCTGCAGAGCTCTCTTGTCACCCTGTACACTGTCTACTTGACCTGGTCGGCTGTGGCTAACAATCC----------------------------------------------------------------------------------------------------------------AGAAAAGGCCTGCAATCCGGGAATGTTTGGCCTTATGGAAGGA-----TTCGGAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGTG....................................................................................................................................................................................2212.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCGGGAATGTTTGGC..........................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATCCGGGAATGTTTGGC..........................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................TGACCTGGTCGGCTGTGGC..................................................................................................................................................................................1911.0010000010000
.....TATCGCTGACGGGCATTACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......ATCGCTGACGGGCATTACTCTGCTGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
........................................................................................................................................................................................................................ATCTTCTGCCTGGTCATCAGCGTC..........................................................................................................................................................................................................................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................GACCTGGTCGGCTGTGGCTAACA.............................................................................................................................................................................2311.0010000001000
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGTGGC..................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................................GTTCTTCATCTCTATT----------AATCTGATCTT.............................................................................................................................................................................................................................................................................................................2711.0010100000000
............................................................................................................................................................................................................................................................................GTCTTCCCCACTCGGGCCTGCTGC......................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................GCCGGCTGTCCAGGAGCGTCTT.........................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................................................................................................................................................................................................................CACTGTCTACTTGACCTGGTCGGC........................................................................................................................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................ATACTGCCGGCTGTCCAG..................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGT.....................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................CCCACTCGGGCCTGCTGCAGAGCT................................................................................................................................................................................................................................2411.0010100000000
.......TCGCTGACGGGCATTACTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
.......TCGCTGACGGGCATTACTCTGCTGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
........................................................................................................................................................................................................................................................ACTGCCGGCTGTCCAGGAGCGTCTTC........................................................................................................................................................................................................................................................2611.0010001000000
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTG......................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................CCGGCTGTCCAGGAGCGTC...........................................................................................................................................................................................................................................................1911.0010001000000
.................................................................................................................................................................................................................................................................................................................CACCCTGTACACTGTCTACT.....................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................AATCTGATCTTCTGCCTGGTC...................................................................................................................................................................................................................................................................................................2111.0010000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGGAATGTTTGGCC.........................1811.0010001000000
.........................................................................................................................................................................................................................TCTTCTGCCTGGTCATCAGC.............................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................GTCACCCTGTACACTGTCTAC......................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................TCCCCACTCGGGCCTGCTGCAGAGC.................................................................................................................................................................................................................................2511.0010100000000
............GACGGGCATTACTCTGCTGTATATCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
.....................................................................................................................................................................CTGGCTGCGGCATCAACAAGT................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
...................................................................................................................................................................................................................................................................TCCAGGAGCGTCTTCCCCACTCGGGCC............................................................................................................................................................................................................................................2711.0010100000000
........................................................................................................................................................................................................................................................................................................................TACACTGTCTACTTGACCTGGTCGGCT.......................................................................................................................................................................................2711.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGGCCTTATGGAAGG...............2011.0010010000000
.....................................................................................................................................................................................................................................................................................................GAGCTCTCTTGTCACCCTGTA................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................AATCC----------------------------------------------------------------------------------------------------------------AGAAAAGGCCTGCAATCCG......................................2411.0010100000000
droPer2
TATCTTATCGCTGACGGGCATTACTCTGCTGTATATCTACTTTACCAC-GGTAAGACG-G----CACGAAAGCGTT-TGCT----TATCTA---TTTGC-----ATTCT-G--------------ATACGCGA------TTT---------TCCTTTCCAGTCCACTGGCTGCGGCATCAACAAGTTCTTCATCTCTATT----------AATCTGATCTTCTGCCTGGTCATCAGCGTCATCTCTATACTGCCGGCTGTCCAGGAGCGTCTTCCCCACTCGGGCCTGCTGCAGAGCTCTCTTGTCACCCTGTACACTGTCTACTTGACCTGGTCGGCTGTGGCTAACAATCC----------------------------------------------------------------------------------------------------------------AGAGAAGGCCTGCAATCCGGGAATGTTTGGCCTGATGGAAGGA-----TTCGGAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCTGT.....................................................................................................................................................................................2113.003300000
...................................................................................................................................................................................................CTATT----------AATCTGATCTTCTGCCT.......................................................................................................................................................................................................................................................................................................2213.003300000
................................................................................................................................................................................................................................................................................................CTGCAGAGCTCTCTTGTCACCCTGTA................................................................................................................................................................................................................2613.003300000
........................................................................................................................................................................................................................ATCTTCTGCCTGGTCATCAGC.............................................................................................................................................................................................................................................................................................2112.002101000
.........GCTGACGGGCATTACTCTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
......................................................................................................................................................................................................................................................................................................................................GACCTGGTCGGCTGTGGCTAACAATCC----------------------------------------------------------------------------------------------------------------AG.......................................................2911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGATGGAAGGA-----TTCGG....1911.001000001
..................................................................................................................................................................................................................................................................................................................................ACTTGACCTGGTCGGCTGT.....................................................................................................................................................................................1911.001000010
.........................................................................................................................................................................................................................................................................................................................................CTGGTCGGCTGTGGCTAAC..............................................................................................................................................................................1911.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGATGGAAGGA-----TTCGGAAAT2411.001000001
........................................................................................................................................................................................................................................................................................................................................CCTGGTCGGCTGTGGCTA................................................................................................................................................................................1811.001100000
......ATCGCTGACGGGCATTACTCTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................ATCTGATCTTCTGCCTGGTC...................................................................................................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................GTCACCCTGTACACTGTCTACTT....................................................................................................................................................................................................2311.001010000
.ATCTTATCGCTGACGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCTGATGGAAGGA-----TT.......2111.001000001
..........................................................................................................................................................................................................................................AGCGTCATCTCTATACTGCCGG..........................................................................................................................................................................................................................................................................2211.001010000
...........TGACGGGCATTACTCTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
......................................................................................................................................................................................................................................................ATACTGCCGGCTGTCCAGGAG...............................................................................................................................................................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................................................................................CTACTTGACCTGGTCGGCT.......................................................................................................................................................................................1911.001100000
droWil2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGATCCTCTGTCTGGCTATCAGTATCATATCGGTTTTGCCCGCTGTCCAGGAACGTCTGCCTCATTCGGGTCTCTTGCAGAGTTCATTGGTCACTTTGTATACCGTCTATTTGACTTGGTCGGCTGTGGCCAATAATCCT----------------------------------------------------------------------------------------------------------------GAAAAGGAATGCAATCCGGGAATGTTTGGCGCAATGCAAGGCAATCTATCGACAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................CTATTTGACTTGGTCGGCTGTGGCC.................................................................................................................................................................................2513.00310200
.........................................................................................................................................................................................................................................................................................................................................TTGGTCGGCTGTGGCCAATAATCCT----------------------------------------------------------------------------------------------------------------........................................................2512.00220000
......................................................................................................................................................................................................................................TATCAGTATCATATCGGTTTTGCCCGCTG.......................................................................................................................................................................................................................................................................2912.00220000
...............................................................................................................................................................................................................................................................................TGCCTCATTCGGGTCTCTTGCAGAGT.................................................................................................................................................................................................................................2612.00202000
.................................................................................................................................................................................................................................................TATCGGTTTTGCCCGCTGTCCAGGA................................................................................................................................................................................................................................................................2512.00202000
..........................................................................................................................................................................................................................................................TGCCCGCTGTCCAGGAACGTCTGCCTCA....................................................................................................................................................................................................................................................2812.00202000
..................................................................................................................................................................................................................AATATGATCCTCTGTCTGGCTATC................................................................................................................................................................................................................................................................................................2412.00220000
.....................................................................................................................................................................................................................................................................................................................................TGACTTGGTCGGCTGTGGC..................................................................................................................................................................................1911.00110000
................................................................................................................................................................................................................................................................................................................................CTATTTGACTTGGTCGGC........................................................................................................................................................................................1811.00110000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAATCCGGGAATGTTTGGCGC........................2311.00101000
.................................................................................................................................................................................................................................................................................................................................TATTTGACTTGGTCGGCTGTGGC..................................................................................................................................................................................2311.00100100
........................................................................................................................................................................................................................................................................................................TTCATTGGTCACTTTGTATACCGTCTATT.....................................................................................................................................................................................................2911.00101000
...............................................................................................................................................................................................................................................................GCTGTCCAGGAACGTCTGCC.......................................................................................................................................................................................................................................................2011.00110000
..................................................................................................................................................................................................................................................................................................................................ATTTGACTTGGTCGGCTGTG....................................................................................................................................................................................2011.00100100
......................................................................................................................................................................................................................................................................................TTCGGGTCTCTTGCAGAGTTCATTGG..........................................................................................................................................................................................................................2611.00101000
......................................................................................................................................................................................................................................................................................................................................GACTTGGTCGGCTGTGGC..................................................................................................................................................................................1811.00110000
.......................................................................................................................................................................................................................................................................................TCGGGTCTCTTGCAGAGTTCATT............................................................................................................................................................................................................................2311.00101000
..........................................................................................................................................................................................................................................................TGCCCGCTGTCCAGGAACGTCTGCC.......................................................................................................................................................................................................................................................2511.00101000
..................................................................................................................................................................................................................................................................................................................................ATTTGACTTGGTCGGCTGTGGCC.................................................................................................................................................................................2311.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTTTGGCGCAATGCAAG................2111.00100100
....................................................................................................................................................................................................................................................................................................................TTTGTATACCGTCTATTTGA..................................................................................................................................................................................................2011.00100100
...............................................................................................................................................................................................................................................................................................CTTGCAGAGTTCATTGGTCA.......................................................................................................................................................................................................................2011.00101000
.................................................................................................................................................................................................................................................TATCGGTTTTGCCCGCTGTCCAGGAA...............................................................................................................................................................................................................................................................2611.00101000
..................................................................................................................................................................................................................................TGGCTATCAGTATCATATCGGTTT................................................................................................................................................................................................................................................................................2411.00101000
................................................................................................................................................................................................................................................................................................................................CTATTTGACTTGGTCGGCTGTG....................................................................................................................................................................................2211.00100100
........................................................................................................................................................................................................................................................................................................................TATACCGTCTATTTGACTTGGTCGGCTG......................................................................................................................................................................................2811.00101000
.................................................................................................................................................................................................................................................TATCGGTTTTGCCCGCTGTCCAGG.................................................................................................................................................................................................................................................................2411.00100100
.........................................................................................................................................................................................................................................................................................................TCATTGGTCACTTTGTATACCGTCTATT.....................................................................................................................................................................................................2811.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAATGCAAGGCAATCTATC......2211.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCGCAATGCAAGGCAATCTATCGA....2711.00100100
....................................................................................................................................................................................................................................................................................................................................TTGACTTGGTCGGCTGTGGCCA................................................................................................................................................................................2211.00100010
....................................................................................................................................................................................................................................................................................CATTCGGGTCTCTTGCAGA...................................................................................................................................................................................................................................1911.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATGCAATCCGGGAATGTTTGGCG.........................2711.00100100
........................................................................................................................................................................................................................................................TTTGCCCGCTGTCCAGGAACGTCTGC........................................................................................................................................................................................................................................................2611.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAATGCAAGGCAATCT.........1911.00101000
..........................................................................................................................................................................................................................................................................................................CATTGGTCACTTTGTATACC............................................................................................................................................................................................................2011.00101000
...............................................................................................................................................................................................................................................................................................CTTGCAGAGTTCATTGGTC........................................................................................................................................................................................................................1911.00110000
........................................................................................................................................................................................................................................................................................................................................CTTGGTCGGCTGTGGCCAATAATCC.........................................................................................................................................................................2511.00110000
...................................................................................................................................................................................................................................................................................................................................TTTGACTTGGTCGGCTGTGGC..................................................................................................................................................................................2111.00100100
................................................................................................................................................................................................................................................................CTGTCCAGGAACGTCTGCCTCATTCGGGT.............................................................................................................................................................................................................................................2911.00100100
...................................................................................................................................................................................................................................................................................................................CTTTGTATACCGTCTATTTGACTTGGT............................................................................................................................................................................................2711.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAATGCAAGGCAATCTATCGA....2311.00100100
..................................................................................................................................................................................................................................................................................................................................ATTTGACTTGGTCGGCTGTGGCCA................................................................................................................................................................................2411.00100100
............................................................................................................................................................................................................................................................CCCGCTGTCCAGGAACGTCTGCCTCA....................................................................................................................................................................................................................................................2611.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGGGAATGTTTGGCGCAATG....................2411.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGGAATGTTTGGCGCAAT.....................2211.00100100
..................................................................................................................................................................................................................AATATGATCCTCTGTCTGGCT...................................................................................................................................................................................................................................................................................................2111.00110000
droVir3
CATAGCCTCCCTGACGGGCATAACTCTCCTCTACATCTACTTCACCAC-AGTCTGTAT-TCCATT-T-----TATATTG-----ATA-------TTCATCTAGC-AA-AC-A-------------A----T-ACGTTTTCTT---------TGATTTGCAGTCGACGGGCTGCGGCATCAACAAGTTCTTCATCTCGATT----------AATCTGATATTCTGCCTGGTTATCAGCATTTTGTCTGTGCTGCCCGCGGTGCAGGAACGCTTGCCCCACTCGGGACTGTTGCAAAGCTCGCTGGTGACATTGTACACCATTTACTTGACCTGGTCCGCTGTGGCCAACAATCCGGGTTTGTCT-----------TG----AATGAAGCAAAC-------CACAATTTGT--GC------GTTTTA-----T---GCCCTCTCGTCTCTCGTCTCTCTCC-CCCGCAGAAAAGGCCTGCAATCCGGGCATGTTTGGACTCATGGAGGGC-----TTGCCCAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................ACCATTTACTTGACCTGGTC...........................................................................................................................................................................................2012.002000000000000000000000000000002000000000000000000000000000000000
.............................................................................................................................................................................................................................................ATTTTGTCTGTGCTGCCCGCGGT......................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGCCTGCAATCCGGGCA..................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................GACCTGGTCCGCTGTGGC..................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TTGACCTGGTCCGCTGTGGCCAAC..............................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GACTGTTGCAAAGCTCGCTGGTGACAT....................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................T--GC------GTTTTA-----T---GCCCTCTCGTCTCTCG........................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................TCTTCATCTCGATT----------AATCTG..................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTTGGACTCATGGAG.................1911.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CCACTCGGGACTGTTGCAAAGCT................................................................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGGGCATGTTTGGAC.........................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................GCTTGCCCCACTCGGGACTGT.........................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TCTGATATTCTGCCTGGTTATC................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGGACTCATGGAGGGC-----T........2211.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................TTTTGTCTGTGCTGCCCGCGGT......................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTCTCTCC-CCCGCAGAAAAGGC................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GACTGTTGCAAAGCTCGCTGGT.........................................................................................................................................................................................................................2211.001000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAATCCGGGCATGTTTGG...........................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CCACTCGGGACTGTTGCAA....................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGGACTCATGGAGGGC-----TTGCC....2511.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GCGGTGCAGGAACGCTTGCCCC.....................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................ACAAGTTCTTCATCTCGATT----------AAT.....................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................GATTTGCAGTCGACGGGCTG..............................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGTCTGTGCTGCCCGCGGT......................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ATTTTGTCTGTGCTGCCCGC.........................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................ATTCTGCCTGGTTATCAGC.............................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TATTGCTTCCCTCACTGGCATCACTTTGCTTTACATCTACTTTACCAC-AGTGCGTAT-AT----------------GAAT----TAATTA---CA----T-----A-T-ACTATATATACTAAAATTAACCTTT--CTCTT---------TCTCTTCTAGTCGACTGGCTGCGGCATCAACAAGTTCTTCATCTCCATA----------AATCTAATACTCTGCTTGGTCATCAGCATTTTGTCGGTGTTGCCGGCTGTGCAGGAACGTTTGCCACATTCGGGTTTGTTGCAGAGCTCATTAGTTACCTTGTACACCGTCTACTTGACCTGGTCCGCTGTGGCCAATAATCCGGGTTGGTCT---------ACTG----ATTGAAGCA--CTCC-----------------TATCTTTTCAAGTTTTTAATGGC-TGT--C--------A---TTTTG-CTTATAGAGAAGGCCTGCAATCCGGGCATGTTTGGCTTGATGGATGAA-----TTGCCCAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCCTGCAATCCGGGC...................................2011.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGGGCATGTTTGGCTTGATG....................2411.001100000
...............................................................................................................................................................................................................................................................................................................................................CGCTGTGGCCAATAATCCGGA......................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................GAGCTCATTAGTTACCTTGTA................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................CTTGACCTGGTCCGCTGTGGCCA................................................................................................................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................TTGACCTGGTCCGCTGTGGCC.................................................................................................................................................................................2111.001100000
droGri2
TATTGCCTCCTTGACGGGCATTACTCTACTCTATATCTACTTTACCAC-TGTATGCGT-AG---A-T-----TGTACTAGT----TACTA----------------G-T-TAATCTTATATCTAAACTAAT--TT----CTC---------ACTGTTTCAGTCCACTGGCTGCGGCATCAACAAGTTCTTTATCTCGATT----------AATCTGATACTCTGTTTGGTTGTCAGCATTCTGTCTGTGTTGCCGGCGGTGCAGGAACGTTTGCCCCACTCGGGCTTGCTGCAAAGTTCGCTCGTCACTTTGTACACCATCTACTTGACCTGGTCCGCTGTGGCCAACAATCCGGGTTAGCCT-----------TG----AACTAGGCA------------TCATTTGTAT-T------T--AAT--TTAATGAT-TATTTTTG------TATCTGATA-CTCACAGAGAAGGCCTGCAATCCGGGCATGTTTGGGTTGATGGATGGT-----CTGCATAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGTTTGGGTTGATGGAT.................2111.00101
...................................................................................................................................................................................................................................................................................CCACTCGGGCTTGCTGCAAA...................................................................................................................................................................................................................................2011.00101
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGTTGATGGATGGT-----C........2011.00101
.....................................................................................................................................................................................................................................................................................ACTCGGGCTTGCTGCAAAGTTCG..............................................................................................................................................................................................................................2311.00110
..............................................................................................................................................................................................................................................................GGCGGTGCAGGAACGTTTG.........................................................................................................................................................................................................................................................1911.00110
.................................................................................................................................................................................................................................................................................CCCCACTCGGGCTTGCTGCA.....................................................................................................................................................................................................................................2011.00110

Generated: 05/17/2015 at 11:30 PM