ID:

dya_795

 Coordinate:

3L:14592866-14593016 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.2 -14.1 -13.9 -13.9

Flybase annnotation

exon [dyak_GLEANR_3870:2]; CDS [Dyak\GE20020-cds]; intron [Dyak\GE20020-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGCGGAATGGCAATAGGAAAAAAGCTATCAGTGTGATTTTGGTAGCGTTGGGCGAAGGTTCGGAACTGATCGAACCTGTCTCTATTGACGTTTTGCTTAGCAGGTGTGATGGCAACAAGTCAATTAGCATATCTACCGCAGCGATAAGAAGCGTAATTGTCATTACTGAGGTTCTTTTTCTATGTACTTTTTTTATCCAGAAACCTTGTCAAGTCAGAGGAGTCGAAGAAGTTGCCCAAAATGGAAGTAA
***************************************************.((...((((((........)))))).......................)).**************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 M056
embryo
 V058
head
 M026
head
 V052
head
................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCGAAGAAGT.................. 25 0 1 3.00 3 2 1 0 0 0 0
........................................TGGTAGTGTGGGGAGAAGGTT.............................................................................................................................................................................................. 21 3 3 2.00 6 0 0 0 5 0 1
..........................................GTAGCGTTGGGCGAAGGTT.............................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................CTTGTCAAGTCAGAGGAGT........................... 19 0 1 2.00 2 0 1 0 0 1 0
..........................................................................................................................................................................................................AACCTTGTCAAGTCAGAGGAGTC.......................... 23 0 1 2.00 2 1 1 0 0 0 0
...................................GATTTTGGTAGCGTTGGGCGAAG................................................................................................................................................................................................. 23 0 1 2.00 2 1 1 0 0 0 0
................................................................................CTCTATTGACGTTTTGCTTAGCA.................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
.....................................................................................................................................................................................................GCAGAAACCTTGTCAAGTCAGAGGAGTC.......................... 28 1 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCG......................... 18 0 1 1.00 1 0 1 0 0 0 0
..............................................................GGAACTGATCGAACCTGTCTCTATT.................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................CAGAGGAGTCGAAGAAGTTGCCCA............ 24 0 1 1.00 1 0 1 0 0 0 0
...........................................................TTCGGAACTGATCGAACCTGT........................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
........................................TGGTAGTGTGGGGTGAAGGTT.............................................................................................................................................................................................. 21 3 1 1.00 1 0 0 0 1 0 0
..........................................................................................................................................................................................................AACCTTGTCAAGTCAGAGGAGT........................... 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GCAGAAACCTTGTCAAGTCAGAGGAGT........................... 27 1 1 1.00 1 1 0 0 0 0 0
...................................GATTTTGGTAGCGTTGGGCGA................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GCAGAAACCTTGTCAAGTCAGAGGAG............................ 26 1 1 1.00 1 1 0 0 0 0 0
...................................GATTTTGGTAGCGTTGGGCGAA.................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
....................................................................................ATTGACGTTTTGCTTAGCAGA.................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................GAACTGATCGAACCTGTCT......................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
............................................................TCGGAACTGATCGAACCTGTCTCTATT.................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.................................GGGATTTTGGTAGCGTTGGGCGAAGGTT.............................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................CAGAAACCTTGTCAAGTCAGAGGAGT........................... 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................GTCGAAGAAGTTGCCCAAAATGGAA.... 25 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GAAGAAGTTGCCCAAAATGG...... 20 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCGAAGAAGTTGCC.............. 29 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................CAGAAACCTTGTCAAGTCAGAGGAGTC.......................... 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................CGGAACTGATCGAACCTGT........................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................CTTGTCAAGTCAGAGGAGTC.......................... 20 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCGAAGAA.................... 23 0 1 1.00 1 1 0 0 0 0 0
..........................................................................ACCTGTCTCTATTGACGTT.............................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
.................................GTGATTTTGGTAGCGTTGGGCGAA.................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................AGGAGTCGAAGAAGTTGCC.............. 19 0 1 1.00 1 0 1 0 0 0 0
..................................................................................CTATTGACGTTTTGCTTAGC..................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
...............................................GTTGGGCGAAGGTTCGGAAC........................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................................................TGTCAAGTCAGAGGAGTCGAAGAAGT.................. 26 0 1 1.00 1 1 0 0 0 0 0
........................................................AGGTTCGGAACTGATCGAACC.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
............................................................TCGGAACTGATCGAACCTGTCT......................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
....................................................................GATCGAACCTGTCTCTATTGACGT............................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
...................................................GGCGAAGGTTCGGAACTGATCG.................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCGAAGA..................... 22 0 1 1.00 1 0 1 0 0 0 0
..............................................................GGAACTGATCGAACCTGTCTCTAT..................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..................................................GGGCGAAGGTTCGGAACT....................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
...................................................GGCGAAGGTTCGGAACTG...................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
.................................................TGGGCGAAGGTTCGGAACT....................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................CGAAGAAGTTGCCCAAAATGG...... 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................CAGAGGAGTCGAAGAAGTTGCCC............. 23 0 1 1.00 1 1 0 0 0 0 0
...................................GATTTTGGTAGCGTTGGGCGAAGGTTC............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.................................GTGATTTTGGTAGCGTTGGGCGAAGGT............................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................AAGTCAGAGGAGTCGAAGAAGT.................. 22 0 1 1.00 1 0 1 0 0 0 0
...................................................................................TATTGACGCTTTGCTTAGCAGA.................................................................................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0
...................................GATTTTGGTAGCGTTGGGC..................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
....................................................................................ATTGACGTTTTGCTTAGCAGGG................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................ATCAGTGTGATTTTGGTAGCGTTGG....................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................AAGAAGTTGCCCAAAATGGA..... 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................TTCGGAACTGATCGAACC.............................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0
..........................................GTAGCGTTGGGCGAAGGT............................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................GAAGAAGTTGCCCAAAATGGAAGT.. 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................GTTCGGAACTGATCGAACCTGTCTC........................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................AGAAACCTTGTCAAGTCAGAGGAGTC.......................... 26 0 1 1.00 1 0 1 0 0 0 0
................................................................AACTGATCGAACCTGTCTCTA...................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
............................................................TCGGAACTGATCGAACCTG............................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
.........................................................GGTTCGGAACTGATCGAACCTGTCT......................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................AAGTCAGAGGAGTCGAAGAAGTTGC............... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................AGAAACCTTGTCAAGTCAGAGGAGT........................... 25 0 1 1.00 1 1 0 0 0 0 0
............................................AGCGTTGGGCGAAGGTT.............................................................................................................................................................................................. 17 0 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................................................CGAAGAAGTTGCCCAAAATGGAA.... 23 0 1 1.00 1 1 0 0 0 0 0
................................................................AACTGATCGAACCTGTCTCTATTG................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...............................................GTTGGGCGAAGGTTCGGAACTGATC................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................................................CTATTGACGTTTTGCTTAGCAGA.................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...................................GATTTTGGTAGCGTTGGGCGAAGGT............................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
........................................................................GAACCTGTCTCTATTGACGT............................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...............................................GTTGGGCGAAGGTTCGGAACTGATCG.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
........................................TGGTAGTGTCGGGTGAAGGT............................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 1 0 0
....................................................................................................................................................................................................AGCAGAAACCTTGTCAAGT.................................... 19 2 3 0.33 1 1 0 0 0 0 0
...............................................ATTGGGCGAACGTTCGGGACT....................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0
................................................................................................CCTAGCGGGTGTGATGGC......................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0
........................................TGGTAGTGTCGGGAGAAGGT............................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0
..............................................CGTTGGTCGTAGGTTCGAA.......................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TCCGCCTTACCGTTATCCTTTTTTCGATAGTCACACTAAAACCATCGCAACCCGCTTCCAAGCCTTGACTAGCTTGGACAGAGATAACTGCAAAACGAATCGTCCACACTACCGTTGTTCAGTTAATCGTATAGATGGCGTCGCTATTCTTCGCATTAACAGTAATGACTCCAAGAAAAAGATACATGAAAAAAATAGGTCTTTGGAACAGTTCAGTCTCCTCAGCTTCTTCAACGGGTTTTACCTTCATT
****************************************************************************************************************************************************.((...((((((........)))))).......................)).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 V052
head
...........................................................................................................................................GTCGCGATTCTTCGAATTGA............................................................................................ 20 3 4 0.25 1 1 0
.........................................................................................................................GTTAATCGTAAAGATGCCGTT............................................................................................................. 21 3 12 0.08 1 0 1
.........................................................................................................................................GCGTCTCTATTCGTCTCATT.............................................................................................. 20 3 18 0.06 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 3L:14592816-14593066 - dya_795 AGGCG-----GAATG--------GCAATA---GGAAAA--AAG---------------------CT-ATCAGTGTGATTTTGGTAGCGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TAC--C-GC----AG--------CGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTT-TT----CTA---TGT----A--CTT------TTTTTATCCAGAAACCTTGTCAAGTCAGAGGAGTCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---GTAA
droEre2 scaffold_4784:14474263-14474511 - der_814 AGGCG-----GAATG--------GCAATA---GGAAAA--GAG---------------------CT-ATCAGTGTGATTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--CGA--------------TGG-CAACA-GGTCAATTAGCATATC---TAC--C-GC----AG--------CGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTT-TA----CCC---TGT----A----C------TTTCCATCCAGAAACCTTGTCAAATCAGAGGAGTCGA---------------------AGAA---GTTAC--------AC-------AAAATGGAA---GTAA
droSec2 scaffold_0:6633101-6633351 - AGGCG-----GAATG--------GCAATA---GGAAAA--ATG---------------------CT-ATCAGTGTGGTTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TAT--T-CC----AC--------CGATAAGAAG--------CGTAATTTTCATTACTGAG----------------------------------GTT-CTTT-TA----CCA---TGT----A--TTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGTCGA---------------------AGAA---ATTAC--------CC-------AAAATGGAA---GTAA
droSim2 3l:14159832-14160082 - dsi_7955 AGGTG-----GAATG--------GCAATA---GGAAAA--AAG---------------------CT-ATCAGTGTGGTTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TAT--T-CC----AC--------CGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTT-TA----CCA---AGT----A--TTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGTCGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAA
dm3 chr3L:14502970-14503221 - AGGTG-----AAATG--------GCAATA---GGAAAA--AAG---------------------GT-ATCAGTGTGGTTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TAG-CAACA-AGTCAATTAGCATATC---TAT--T-CC----AC--------CGATAAGAAG--------CGTAATTGTCATTGCTGAG----------------------------------GTT-CTCT-TA----CCA---TGT----A-TTTT------TTTTTATCCAGAAACCTTGTCAAATCGGAGGAGTCGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAA
droEug1 scf7180000409456:732388-732654 - AGGTG-----GAATGCGATATTGGCA-TA--TGAAAAA--TAG---------------------GA-ATCAGTGTGATTTTGGTAACGTTAGACGAAGGTTCGA--------------------------AATTGATCGGGCCCAAACTCT-----ATTGACGTT-----------------------TTTCTGTG-----CAGGTGTGTGA--------------TGA-CAACA-AGTCAATTAGCATATC---TCT--ACCT----GC--------TGATAAGAAG----------TAATTGTAATTACTTTG----------------------------------GTT-TCAT-TT----CGA---TTTGTTTCTTTTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGTCAA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAA
droBia1 scf7180000302428:5389880-5390128 + AGGTG-----CAACA--------GCAGTA---CGAAAA--TTG---------------------GA-ATCAGTGTGATTTTGGTAACGTCGGCCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TGC--C-CC----AC--------TGATAAAGAG--------CCTAATTGTAATTATTGGG----------------------------------GTT-TCTT-TT---------------TTCTCTAT------GTGCTATCCAGAAACCTTGTCAAATCGGAGGAGTCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---ACAA
droTak1 scf7180000415135:175015-175257 - AGGGG-----CGATG--------GAAATA---CGACAAAATTG---------------------GA-ATCAGTGTGATTTTGGTAACGTTGGGCGAAGGTTCGA--------------------------AACCGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTTCCAAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TCA--A-CT----GC--------TGATAAGAGG--------CGTAATTATAATTACTGAG----------------------------------GTT-TATT------------------------TT------TTTCTATCCAGAAACCTTGTCAAATCAGAGGAGTTGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---GTAA
droEle1 scf7180000491199:1640097-1640352 - AGGTG-----CAATG--------GCAATA---CCAAAA--TTG---------------------AA-ATCAGTGTGATTTTGGTAGCGTCGGGCGAAGGTTCGA--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCAGAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATCACATAT--C-GT----AC--------TGATAAGAAG--------CGCAATTGTAATTACCGAGCTTT-------C----------------------GTT-TTTT-TT----CGA------------TTTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGCCGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAA
droRho1 scf7180000772405:173-427 + AGGAG-----AAATG--------GGAATA---CGAAAA--TTG---------------------GA-ATCAGTGTGATTTTGGTAGCGTCGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGGTGAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---A----C-CT----AC--------TGATAAGAAG--------CGTAATTGTAATTACTGAG----------------------------------GTG-TCGT-TTTTTTCGA------------TTTT---CA-TTTATATCCAGAAACCTTGTCAAATCAGAGGAGCCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAAAATGGAA
droFic1 scf7180000453784:841502-841760 - AGGTG-----CAATG--------GCAGTA---GAGAAA--TCG---------------------GA-ATCAGTGTGATTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------GACTGATCGAACC-TGTCTCGATTCGATTGACGTT-----------------------TTGCATAG-----CAGGTG--CGA--------------TGG-CAACA-AGTCAATTAACATATC---A----C-CA----AC--------TGATAAGAAG--------CGTAATTATAATTACTAAG----------------------------------GTTTCTTT-TT----TCA---TGTCGTTC--TTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGTCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---GCGA
droKik1 scf7180000302441:560996-561250 - AGG-G-----TTATG--------GCAAAA---AAGGAAAATTA------GAGCC----------ATCATCAGTGTGATTTTGGTAACGTTCGGTGAAGGTTCGGCGGT----------------------AACTGATCGAACC-TGTCTC---------------------------------------------------CAGGTG--TGA--------------AGG-CAGCA-AATCAATTAGCATATC---T----C-CA----AC--------TGATAAGAAAAG-T----CGTAATTGTAATTAACCAG----------------------------------CTT-TACCTTTGTTTCGT------------TTTT---CT-TTTTTATCCAGAAGTCTTGTCAAAGCAGAAGAGCAGC---------------AGTCAAAGAA---GTTGC--------CC-------AAAATGGAG---GTTA
droAna3 scaffold_13337:4582627-4582897 + AGG-------GAATG--------GCAATA---CGAAAA--TTA------GAAGTGC-CGGGGGGAA-ATCAGTATGATTTTGGTATCGCTGGGCGAAGGTTCGG---G----------------------AATCGATCGAACC-TGTCGCC-----GTTGACATT-----------------------CCGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATA---TCG--C-CGGTGGGC--------CGATAAGAAA---T----CGTAATTATAATTATGGTATTTG-------TGT--------------------GTT-CTTT-T------------------CTTTTG------CTTTTATCCAGAAACCTTGTCAAATCAGAGGAGCCGA---------------------AAAA---GGTGG--------CC-------AAAATGGAA---GCTA
droBip1 scf7180000395450:704153-704418 + AGG-------GAATG--------GCAATA---CGAAAA--TTG------GAAGTGC-CGGGGGGAA-ATCAGTATGATTTTGGTATCGCTGGGCGAAGGTTCGG---G----------------------AATCGATTGAACC-TGTCTCC-----GTTGACATT-----------------------CCGGTGAG-----CAGGTG-GTGA--------------TGG-CAACA-AGTCAATTAGCATATA---TCGCAACCC----GC--------CGATAAGAATTC-CTATAAGTAATTATAATTATGGTATTTG-------TG---------------------------------------------------TGTT------CTTTTATCCAGAAACCTCGTCAAATCAGAGGAGCCGA---------------------AAAA---GGTGG--------CC-------AAAATGGAG---GCTA
dp5 XR_group6:7201971-7202322 - AGGTGCTTCGGAATG--------GCAAAGAGTTATAGA--GAA---------------------AT-GTCAGTGTTATTTTGGAAACGTTAGGCACAGGTTCGA---T----------------------CGACGACAAAACC-TGTCTCA-----ACTGACATTCAATTTCCGATTTGCGTTCGTTGTTGCTCAGCCAGCCAGGTG--CGGAGAGGGGCCACAGGCAG-AAACAGAGCCAATTAGCATATC---AGA--GAGT----AC--------CGATAAGCAGAGCC----CATAATTATGATTACTCAAATTACTCGATTTGTTGACTGATTGAA--------GTT-CTTT-CT----C-----TG--ACTC--TTTTCTCTGCCTCCCCACAGAACCATTGTCAAGCCGGAGGAGCTGA---------------------AAAA---ATTGCAAGCA-CC--GACGTCCAATATGGAG---GCTA
droPer2 scaffold_41:555076-555427 - AGGTGCTTCGGAATG--------GCAAAGAGGTATAGA--GAA---------------------AT-GTCAGTGTTATTTTGGAAACGTTAGGCAAAGGTTCGA---T----------------------CGGCGACAGAACC-TGTCTCA-----ACTGACATTCAATTTCCGATTTGCGTTCGTTGTTGCTCAGCCAGCCAGGTG--CGGAGAGGGGCCACAGGCAG-AAACAGAGCCAATTAGCATATC---AGA--GAGT----AC--------CGATAAGCAGAGCC----CATAATTATGATTACTCAAATTACTCGATTTGTTGACTGATTGAA--------GTT-CTTT-CT----C-----TG--ACTC--TTTTCTCTGCCTCCCCACAGAACCATTGTCAAGCCGGAGGAGCTGA---------------------AAAA---ATTGCAAGCA-CC--GACGTCCAATATGGAG---GCTA
droWil2 scf2_1100000004762:3875591-3875929 - AGAACCT---GAATG--------GCAAAA---ACAAAA--AATCCATTAGAACGCT-CTTGGCCCA-ATCAGTGTTATTTTGGAGACGTAAGGCAAAGGTTCGA---ATA-----AAGAATTTTTCGCGCAG------------------C-----ACTGACTTGCAATATACAAT-----------------ACA-----TAGGTG--GGA--------------ATT-GTTGA-ACACAATTAGCATA----------------------------CGATAAGAATGG-CCAT-AATAATTATAATTACTCAATGTG-------TGATGACTGATTGACAATGTTTGGTT-TTTT-TT----CTTTTCTGTTTTTCTTTTT---TTGTTATTTCACAGAACCGTAGTTAAAGCCGAGAAGTTACCACAACAACAACAGCAGC---AACA---GTTGC--------C-GATGTCCAAAATGGAA---GCTA
droVir3 scaffold_13049:21816812-21816860 + AGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCTCAAGTCAAGAGCGTTGA---------------------TAAGATTGTTGC--------CC-------ACGATGA---------
droMoj3 scaffold_6680:16347548-16347622 + GAGGAG----CTAAA--------GAAG----------------------------------------------------------------------------------------------------------------------------------TTGCCGCA-----------------------TTACGTAG-----CGCCAG--AAA--------------AGG-CA--------------------------------------------------------------------ACTG----------------------------------------------------------------------------------------------------------------------CCAA---------------------AATG---GAAGC--------CC-------AAG-T-GGA---GCAG
droGri2 scaffold_15053:182043-182335 + ACAAG-----TAATG--------GTAAAA---GCCA----TTC------AACGTACGTTTGGGCCA-ATTAGTACTATTTTCGAGGCGAAAGGCAAAGGTATCG---GTGCTTTTAGTTATTTTTTTCGCAGCTGACGG-GCA-AATTTCC-----GTTTGC---------------------------TGTAGAG-----CAA------------------CAGGTGGGAGACAAAATCAATTAACATACA---TAG--T-AC----ACACACATTTTGATAAGAGTGG-C----AATCATAATAATTACTCAATGTG-------AC---------------------A-T-TATT-T------------------GTTGTG------TCTTCGTACAGTGCGTTTGT------GGACGAGTTGA---------------------AGAA---GTTGCAGCCAC--CG-------AAGGTGCCA---GCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
AGGCG-----GAATG--------GCAATA---GGAAAA--AAG---------------------CT-ATCAGTGTGATTTTGGTAGCGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TAC--C-GC----AG--------CGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTT-TT----CTA---TGT----A--CTT------TTTTTATCCAGAAACCTTGTCAAGTCAGAGGAGTCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---GTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCGA---------------------AGAA---GT....................................2513.00301000020000
..................................................................................GTAGCGTTGGGCGAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................1912.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAGTCAGAGGAGT.....................................................................1912.00211000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTGTCAAGTCAGAGGAGTC....................................................................2312.00201000010000
...........................................................................GATTTTGGTAGCGTTGGGCGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................2312.00201000010000
...................................................................................................................................................CTCT-----ATTGACGTT-----------------------TTGCTTAG-----CA.................................................................................................................................................................................................................................................................................................2312.00201000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCG...................................................................1811.00101000000000
......................................................................................................GG--------------------------AACTGATCGAACC-TGTCTCT-----ATT.............................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGAGTCGA---------------------AGAA---GTTGC--------CC-------A...............2411.00101000000000
...................................................................................................TTCGG--------------------------AACTGATCGAACC-TGT.........................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTGTCAAGTCAGAGGAGT.....................................................................2211.00100000010000
...........................................................................GATTTTGGTAGCGTTGGGCGA............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...........................................................................GATTTTGGTAGCGTTGGGCGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
............................................................................................................................................................ATTGACGTT-----------------------TTGCTTAG-----CAGA...............................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................G--------------------------AACTGATCGAACC-TGTCT.......................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................TCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATT.............................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGAAACCTTGTCAAGTCAGAGGAGT.....................................................................2611.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---....2511.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------AGAA---GTTGC--------CC-------AAAATGG.........2011.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCGA---------------------AGAA---GTTGC--------C........................2911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGAAACCTTGTCAAGTCAGAGGAGTC....................................................................2711.00100000010000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGT.........................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAGTCAGAGGAGTC....................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCGA---------------------AGAA---......................................2311.00100000010000
............................................................................................................................................ACC-TGTCTCT-----ATTGACGTT-----------------------................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................GTGATTTTGGTAGCGTTGGGCGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTCGA---------------------AGAA---GTTGC--------C........................1911.00101000000000
.....................................................................................................................................................CT-----ATTGACGTT-----------------------TTGCTTAG-----C..................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------AAC.......................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGTCAGAGGAGTCGA---------------------AGAA---GT....................................2611.00100000010000
................................................................................................AGGTTCGG--------------------------AACTGATCGAACC-............................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
....................................................................................................TCGG--------------------------AACTGATCGAACC-TGTCT.......................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................GATCGAACC-TGTCTCT-----ATTGACGT........................................................................................................................................................................................................................................................................................................................................2411.00101000000000
...........................................................................................GGCGAAGGTTCGG--------------------------AACTGATCG.................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGAGTCGA---------------------AGA..........................................2211.00101000000000
......................................................................................................GG--------------------------AACTGATCGAACC-TGTCTCT-----AT..............................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..........................................................................................GGGCGAAGGTTCGG--------------------------AACT......................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...........................................................................................GGCGAAGGTTCGG--------------------------AACTG.....................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.........................................................................................TGGGCGAAGGTTCGG--------------------------AACT......................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------------------AGAA---GTTGC--------CC-------AAAATGG.........2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGAGTCGA---------------------AGAA---GTTGC--------CC-------................2311.00100000010000
...........................................................................GATTTTGGTAGCGTTGGGCGAAGGTTC......................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................................GTGATTTTGGTAGCGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCAGAGGAGTCGA---------------------AGAA---GT....................................2211.00101000000000
...........................................................................GATTTTGGTAGCGTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............................................................................................................................................................ATTGACGTT-----------------------TTGCTTAG-----CAGGG..............................................................................................................................................................................................................................................................................................2211.00100000010000
...................................................................ATCAGTGTGATTTTGGTAGCGTTGG................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------AGAA---GTTGC--------CC-------AAAATGGA........2011.00100000010000
...................................................................................................TTCGG--------------------------AACTGATCGAACC-............................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..................................................................................GTAGCGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---GT..2411.00100000010000
..................................................................................................GTTCGG--------------------------AACTGATCGAACC-TGTCTC......................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGAAACCTTGTCAAGTCAGAGGAGTC....................................................................2611.00101000000000
..................................................................................................................................AACTGATCGAACC-TGTCTCT-----A...............................................................................................................................................................................................................................................................................................................................................2111.00101000000000
....................................................................................................TCGG--------------------------AACTGATCGAACC-TG..........................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.................................................................................................GGTTCGG--------------------------AACTGATCGAACC-TGTCT.......................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCAGAGGAGTCGA---------------------AGAA---GTTGC--------.........................2511.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGAAACCTTGTCAAGTCAGAGGAGT.....................................................................2511.00100000010000
....................................................................................AGCGTTGGGCGAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---....2311.00100000010000
..................................................................................................................................AACTGATCGAACC-TGTCTCT-----ATTG............................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------AACTGATC..................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................................................................................................................................................CT-----ATTGACGTT-----------------------TTGCTTAG-----CAGA...............................................................................................................................................................................................................................................................................................2311.00101000000000
...........................................................................GATTTTGGTAGCGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
..........................................................................................................................................GAACC-TGTCTCT-----ATTGACGT........................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------AACTGATCG.................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEre2
AGGCG-----GAATG--------GCAATA---GGAAAA--GAG---------------------CT-ATCAGTGTGATTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--CGA--------------TGG-CAACA-GGTCAATTAGCATATC---TAC--C-GC----AG--------CGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTT-TA----CCC---TGT----A----C------TTTCCATCCAGAAACCTTGTCAAATCAGAGGAGTCGA---------------------AGAA---GTTAC--------AC-------AAAATGGAA---GTAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGAGGAGTCGA---------------------AGAA---GT....................................2114.0041000300
..................................................................................GTAACGTTGGGCGAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................1913.0031000200
...............................................................................................................................................................GACGTT-----------------------TTGCTTAG-----CAGA...............................................................................................................................................................................................................................................................................................1813.0032000010
.................................................................................GGTAACGTTGGGCGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000200
.....................................................................................ACGTTGGGCGAAGGTTCGG--------------------------AACT......................................................................................................................................................................................................................................................................................................................................................................2312.0021000100
.......................................................................................................G--------------------------AACTGATCGAACC-TGTCTCT-----ATT.............................................................................................................................................................................................................................................................................................................................................2412.0020000200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------------------AGAA---GTTAC--------AC-------AAAATGGAA---....2312.0020000110
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGGAGTCGA---------------------AGAA---GT....................................2012.0020000200
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGGAGTCGA---------------------AGAA---GTTA..................................2211.0010000100
....................................................................................AACGTTGGGCGAAGGTTCGG--------------------------AAC.......................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...................................................................................................TTCGG--------------------------AACTGATCGAACC-TGTCT.......................................................................................................................................................................................................................................................................................................................................................2311.0010100000
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------AACTGATCGA................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...........................................................................GATTTTGGTAACGTTGGGCGAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.......................................................................................................G--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGT........................................................................................................................................................................................................................................................................................................................................2911.0010000100
...............................................................................................................................................................................................................................................................................................................GTCATTACTGAG----------------------------------GTT-CTTT-TA----CCC---C.........................................................................................................................2511.0010100000
.....................................................................................ACGTTGGGCGAAGGTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------------------AGAA---GTTAC--------AC-------AAAATGGAA---GT..2511.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAATCAGAGGAGTCGA---------------------AGAA---GT....................................2811.0010000100
..................................................................................................................................................................GTT-----------------------TTGCTTAG-----CAGGTG--CGA--------------TGG-C.....................................................................................................................................................................................................................................................................2411.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------------------AGAA---GTTAC--------AC-------AAAATGGAA---GTA.2611.0010000100
..................................................................................................................................AACTGATCGAACC-TGTCTCT-----ATTGAC..........................................................................................................................................................................................................................................................................................................................................2611.0011000000
.................................................................................GGTAACGTTGGGCGAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGTCTCA-----................................................................................................................................................................................................................................................................................................................................................2311.0010000010
...........................................................................GATTTTGGTAACGTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
...........................................................................GATTTTGGTAACGTTGGGCGAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAGAGGAGTCGA---------------------AGAA---GT....................................2211.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTTGTCAAATCAGAGGAGTCGA---------------------AG...........................................2811.0010000100
..................................................................................GTAACGTTGGGCGAAGGTTCGG--------------------------AAC.......................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
............................................................................ATTTTGGTAACGTTGGGCGAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................................................................T-----ATTGACGTT-----------------------TTGCTTAG-----CAGA...............................................................................................................................................................................................................................................................................................2211.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAACCTTGTCAAATCAGAGGAGT.....................................................................2411.0010000100
.........................................................................................TGGGCGAAGGTTCGG--------------------------AACTGATCGAA...............................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...........................................................................................................................................AACC-TGTCTCT-----ATTGACGTT-----------------------................................................................................................................................................................................................................................................................................................................2011.0010000100
..........................................................................................................................................GAACC-TGTCTCT-----ATTGACGT........................................................................................................................................................................................................................................................................................................................................2011.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGAGGAGTCGA---------------------AGAA---GTTA..................................2311.0010000100
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------AA........................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAATCAGAGGAGT.....................................................................1911.0010000100
....................................................................................................TCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATT.............................................................................................................................................................................................................................................................................................................................................2711.0010000100
......................................................................................................................................GATCGAACC-TGTCTCT-----ATT.............................................................................................................................................................................................................................................................................................................................................1911.0011000000
...........................................................................................GGCGAAGGTTCGG--------------------------AACTGATC..................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................ACTGATCGAACC-TGTCTCT-----ATTGACGT........................................................................................................................................................................................................................................................................................................................................2711.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA---------------------AGAA---GTTAC--------AC-------AAAATGGAA---....2411.0010000010
droSec2
AGGCG-----GAATG--------GCAATA---GGAAAA--ATG---------------------CT-ATCAGTGTGGTTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TAT--T-CC----AC--------CGATAAGAAG--------CGTAATTTTCATTACTGAG----------------------------------GTT-CTTT-TA----CCA---TGT----A--TTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGTCGA---------------------AGAA---ATTAC--------CC-------AAAATGGAA---GTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................GGTAACGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................1913.0030210
....................................................................................AACGTTGGGCGAAGGTTCGG--------------------------..........................................................................................................................................................................................................................................................................................................................................................................2012.0020110
....................................................................................................TCGG--------------------------AACTGATCGAACC-TGTCTCT-----................................................................................................................................................................................................................................................................................................................................................2411.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTCGA---------------------AGAA---ATTAC--------CC-------AAAAT...........2511.0010010
..................................................................................GTAACGTTGGGCGAAGGTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
......................................................................AGTGTGGTTTTGGTAACGTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
..............................................................................................................................................C-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CA.................................................................................................................................................................................................................................................................................................2711.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATCAGAGGAGTCGA---------------------.............................................1911.0010010
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGT.........................................................................................................................................................................................................................................................................................................................................................1911.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGAGGAGTCGA---------------------AGAA---ATTAC--------CC-------................2611.0011000
...................................................................................TAACGTTGGGCGAAGGTTCGG--------------------------AA........................................................................................................................................................................................................................................................................................................................................................................2311.0010100
............................................................................GTTTTGGTAACGTTGGGCGAAGGTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
............................................................................................GCGAAGGTTCGG--------------------------AACTGATCGAA...............................................................................................................................................................................................................................................................................................................................................................2311.0010100
..................................................................................GTAACGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............................................................................................................................................ACC-TGTCTCT-----ATTGACGT........................................................................................................................................................................................................................................................................................................................................1811.0010010
......................................................................................................GG--------------------------AACTGATCGAACC-TGT.........................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA---------------------AGAA---ATTAC--------CC-------AAAATGGAA---GT..2711.0010010
...........................................................................................GGCGAAGGTTCGG--------------------------AACTGATCGAA...............................................................................................................................................................................................................................................................................................................................................................2411.0010100
................................................................................................AGGTTCGG--------------------------AACTGATCGAA...............................................................................................................................................................................................................................................................................................................................................................1911.0011000
....................................................................................AACGTTGGGCGAAGGTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droSim2
AGGTG-----GAATG--------GCAATA---GGAAAA--AAG---------------------CT-ATCAGTGTGGTTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TAT--T-CC----AC--------CGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTT-TA----CCA---AGT----A--TTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGTCGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................TTCGG--------------------------AACTGATCGAACC-T...........................................................................................................................................................................................................................................................................................................................................................1913.00330000000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGTCT.......................................................................................................................................................................................................................................................................................................................................................2113.00303000000000000000
...................................................................................................TTCGG--------------------------AACTGATCGAACC-............................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.................................................................................................GGTTCGG--------------------------AACTGATCGAAC..............................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
..............................................................................................GAAGGTTCGG--------------------------AACTGATCGA................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
................................................................................TGGTAACGTTGGGCGAAGGTTC......................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGGAGTCGA---------------------AGAA---GTTAC--------.........................2311.00100010000000000000
..................................................................................................................................................................GTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------T.........................................................................................................................................................................................................................................................................2111.00100010000000000000
.................................................................................................GGTTCGG--------------------------AACTGATCGAA...............................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
......................................................................................CGTTGGGCGAAGGTTCGG--------------------------AACTGATCG.................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
......................................................................................................................................GATCGAACC-TGTCTCT-----ATTGACGT........................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
................................................................................................AGGTTCGG--------------------------AACTGATCGAAC..............................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAATCAGAGGAGTCGA---------------------AGAA---GTT...................................2711.00100000000000010000
..............................................................................TTTGGTAACGTTGGGCGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..................................................................................GTAACGTTGGGCGAAGGTTCGG--------------------------AACT......................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
..........................................................................................GGGCGAAGGTTCGG--------------------------AACTGATCGAAC..............................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
..................................................................................................................................AACTGATCGAACC-TGTCTCT-----ATTGA...........................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATCAGAGGAGTCGA---------------------AGAA---GT....................................2511.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAA2911.00100010000000000000
.......................................................................................................G--------------------------AACTGATCGAACC-TGTCTCT-----ATTGAC..........................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
................................................................................................AGGTTCGG--------------------------AACTGATCGA................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...................................................................................TAACGTTGGGCGAAGGTTCGG--------------------------A.........................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TG..........................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
....................................................................................AACGTTGGGCGAAGGTTC......................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGTCTC......................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGTCC.......................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...........................................................................................GGCGAAGGTTCGG--------------------------AACTGATC..................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..............................................................................................GAAGGTTCGG--------------------------AACTGATC..................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
....................................................................................................TCGG--------------------------AACTGATCGAACC-G...........................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
....................................................................................AACGTTGGGCGAAGGTTCGG--------------------------AACT......................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
....................................................................................................TCGG--------------------------AACTGATCGAACC-T...........................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGTC........................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
dm3
AGGTG-----AAATG--------GCAATA---GGAAAA--AAG---------------------GT-ATCAGTGTGGTTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TAG-CAACA-AGTCAATTAGCATATC---TAT--T-CC----AC--------CGATAAGAAG--------CGTAATTGTCATTGCTGAG----------------------------------GTT-CTCT-TA----CCA---TGT----A-TTTT------TTTTTATCCAGAAACCTTGTCAAATCGGAGGAGTCGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................GTAACGTTGGGCGAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................AACTGATCGAACC-TGTCTCT-----ATT.............................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGT.........................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CGTTGGGCGAAGGTTCGG--------------------------..........................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000
.................................................................................GGTAACGTTGGGCGAAGGTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AACGTTGGGCGAAGGTTCGG--------------------------..........................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
......................................................................AGTGTGGTTTTGGTAACGTTGG................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTA.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGAGGAGTCGA---------------------AGAA---......................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AACGTTGGGCGAAGGTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTGGGCGAAGGTTCGG--------------------------AACT......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................GGTAACGTTGGGCGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................GG--------------------------AACTGATCGAACC-TGTCT.......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGATC.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AACGTTGGGCGAAGGTTCGG--------------------------AA........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CGTTGGGCGAAGGTTCGG--------------------------AACTGA....................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTCAAATCGGAGGAGTCGA---------------------.............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ACGTTGGGCGAAGGTTCGG--------------------------..........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GATCGAACC-TGTCTCT-----ATTGACGTT-----------------------T...............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTTGGTAACGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................TTGGTAACGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TCGG--------------------------AACTGATCGAACC-TGTCTCT-----................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................ATCAGTGTGGTTTTGGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................GCGAAGGTTCGG--------------------------AACTGAT...................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TTTGGTAACGTTGGGCGAAGGTTC......................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................TTGGTAACGTTGGGCGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGTCT.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------..........................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTGGGCGAAGGTTCGG--------------------------AACTGA....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------A.........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................TAACGTTGGGCGAAGGTTATC--------------------------..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTCAAATCGGAGGAGTC....................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................TGGGCGAAGGTTCGG--------------------------AACTGATCGA................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGA...........................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ACC-TGTCTCT-----ATTGACGTT-----------------------TTG.............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------AACTG.....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TTAG-----CAGGTG--TGA--------------TAG-CAACA-AGTCAA..........................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGTAACGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................GTTGGGCGAAGGTTCGG--------------------------AACTGATC..................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................GTGGTTTTGGTAACGTTGGGCGA............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................CGTTGGGCGAAGGTTCGG--------------------------AACTGAT...................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................GCGAAGGTTCGG--------------------------AACTGATT..................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................GG--------------------------AACTGATCGAACC-TGT.........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................GGTTCGG--------------------------AACTGATCGA................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TAACGTTGGGCGAAGGTTCGG--------------------------..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTCAAATCGGAGGAGT.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGTAACGTTGGGCGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ACGTTGGGCGAAGGTTCGG--------------------------AA........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................GTAACGTTGGGCGAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CGG--------------------------AACTGATCGAACC-TGTCTCT-----AT..............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGTCGA---------------------AGAA---GTTAC--------C........................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GGTAACGTTGGGCGAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................TTGGGCGAAGGTTCGG--------------------------AACTGAT...................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................GGTAACGTTGGGCGAAGGTTC......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................AACGTTGGGCGAAGGTTCGG--------------------------AACTGAT...................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................ACTGATCGAACC-TGTCTCT-----AT..............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTCGA---------------------AGAA---GTTAC--------CC-------AAAA............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GACGTT-----------------------TTGCTTAG-----CAGA...............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTGGGCGAAGGTTCGG--------------------------AACTGAAT..................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................CAATA---GGAAAA--AAG---------------------GT-AGG......................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
AGGTG-----GAATGCGATATTGGCA-TA--TGAAAAA--TAG---------------------GA-ATCAGTGTGATTTTGGTAACGTTAGACGAAGGTTCGA--------------------------AATTGATCGGGCCCAAACTCT-----ATTGACGTT-----------------------TTTCTGTG-----CAGGTGTGTGA--------------TGA-CAACA-AGTCAATTAGCATATC---TCT--ACCT----GC--------TGATAAGAAG----------TAATTGTAATTACTTTG----------------------------------GTT-TCAT-TT----CGA---TTTGTTTCTTTTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGTCAA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAASizeHit CountTotal NormTotal
No Reads
droBia1
AGGTG-----CAACA--------GCAGTA---CGAAAA--TTG---------------------GA-ATCAGTGTGATTTTGGTAACGTCGGCCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TGC--C-CC----AC--------TGATAAAGAG--------CCTAATTGTAATTATTGGG----------------------------------GTT-TCTT-TT---------------TTCTCTAT------GTGCTATCCAGAAACCTTGTCAAATCGGAGGAGTCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---ACAASizeHit CountTotal NormTotal
No Reads
droTak1
AGGGG-----CGATG--------GAAATA---CGACAAAATTG---------------------GA-ATCAGTGTGATTTTGGTAACGTTGGGCGAAGGTTCGA--------------------------AACCGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTTCCAAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---TCA--A-CT----GC--------TGATAAGAGG--------CGTAATTATAATTACTGAG----------------------------------GTT-TATT------------------------TT------TTTCTATCCAGAAACCTTGTCAAATCAGAGGAGTTGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---GTAASizeHit CountTotal NormTotal
No Reads
droEle1
AGGTG-----CAATG--------GCAATA---CCAAAA--TTG---------------------AA-ATCAGTGTGATTTTGGTAGCGTCGGGCGAAGGTTCGA--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCAGAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATCACATAT--C-GT----AC--------TGATAAGAAG--------CGCAATTGTAATTACCGAGCTTT-------C----------------------GTT-TTTT-TT----CGA------------TTTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGCCGA---------------------AGAA---GTTAC--------CC-------AAAATGGAA---GTAASizeHit CountTotal NormTotal
No Reads
droRho1
AGGAG-----AAATG--------GGAATA---CGAAAA--TTG---------------------GA-ATCAGTGTGATTTTGGTAGCGTCGGGCGAAGGTTCGG--------------------------AACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGGTGAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATC---A----C-CT----AC--------TGATAAGAAG--------CGTAATTGTAATTACTGAG----------------------------------GTG-TCGT-TTTTTTCGA------------TTTT---CA-TTTATATCCAGAAACCTTGTCAAATCAGAGGAGCCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAAAATGGAASizeHit CountTotal NormTotal
No Reads
droFic1
AGGTG-----CAATG--------GCAGTA---GAGAAA--TCG---------------------GA-ATCAGTGTGATTTTGGTAACGTTGGGCGAAGGTTCGG--------------------------GACTGATCGAACC-TGTCTCGATTCGATTGACGTT-----------------------TTGCATAG-----CAGGTG--CGA--------------TGG-CAACA-AGTCAATTAACATATC---A----C-CA----AC--------TGATAAGAAG--------CGTAATTATAATTACTAAG----------------------------------GTTTCTTT-TT----TCA---TGTCGTTC--TTT------TTTTTATCCAGAAACCTTGTCAAATCAGAGGAGTCGA---------------------AGAA---GTTGC--------CC-------AAAATGGAA---GCGASizeHit CountTotal NormTotal
No Reads
droKik1
AGG-G-----TTATG--------GCAAAA---AAGGAAAATTA------GAGCC----------ATCATCAGTGTGATTTTGGTAACGTTCGGTGAAGGTTCGGCGGT----------------------AACTGATCGAACC-TGTCTC---------------------------------------------------CAGGTG--TGA--------------AGG-CAGCA-AATCAATTAGCATATC---T----C-CA----AC--------TGATAAGAAAAG-T----CGTAATTGTAATTAACCAG----------------------------------CTT-TACCTTTGTTTCGT------------TTTT---CT-TTTTTATCCAGAAGTCTTGTCAAAGCAGAAGAGCAGC---------------AGTCAAAGAA---GTTGC--------CC-------AAAATGGAG---GTTASizeHit CountTotal NormTotal
No Reads
droAna3
AGG-------GAATG--------GCAATA---CGAAAA--TTA------GAAGTGC-CGGGGGGAA-ATCAGTATGATTTTGGTATCGCTGGGCGAAGGTTCGG---G----------------------AATCGATCGAACC-TGTCGCC-----GTTGACATT-----------------------CCGCTTAG-----CAGGTG--TGA--------------TGG-CAACA-AGTCAATTAGCATATA---TCG--C-CGGTGGGC--------CGATAAGAAA---T----CGTAATTATAATTATGGTATTTG-------TGT--------------------GTT-CTTT-T------------------CTTTTG------CTTTTATCCAGAAACCTTGTCAAATCAGAGGAGCCGA---------------------AAAA---GGTGG--------CC-------AAAATGGAA---GCTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................CGG---G----------------------AATCGATCGAACC-TGTCGCC-----GTT.............................................................................................................................................................................................................................................................................................................................................2711.001100000
...................................................................................................TTCGG---G----------------------AATCGATCGAACC-TGTCGC......................................................................................................................................................................................................................................................................................................................................................2511.001010000
......................................................................................................................................................C-----GTTGACATT-----------------------CCGCTTAG-----CAGA...............................................................................................................................................................................................................................................................................................2211.001010000
.................................................................................GGTATCGCTGGGCGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................G---G----------------------AATCGATCGAACC-TGTCGC......................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................TCGG---G----------------------AATCGATCGAACC-TGTCGCC-----................................................................................................................................................................................................................................................................................................................................................2511.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------------------AAAA---GGTGG--------CC-------AAAAT...........1911.001000010
.................................................................................................................................................................................................................................................................................................................................................................CTTT-T------------------CTTTTG------CTTTTATC...............................................................................................1911.001010000
..................................................................................................GTTCGG---G----------------------AATCGATCGAACC-TGTCGCC-----GT..............................................................................................................................................................................................................................................................................................................................................2911.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATCAGAGGAGCCGA---------------------AAAA---GGTG..................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTTGTCAAATCAGAGGAGCC....................................................................2411.001010000
droBip1
AGG-------GAATG--------GCAATA---CGAAAA--TTG------GAAGTGC-CGGGGGGAA-ATCAGTATGATTTTGGTATCGCTGGGCGAAGGTTCGG---G----------------------AATCGATTGAACC-TGTCTCC-----GTTGACATT-----------------------CCGGTGAG-----CAGGTG-GTGA--------------TGG-CAACA-AGTCAATTAGCATATA---TCGCAACCC----GC--------CGATAAGAATTC-CTATAAGTAATTATAATTATGGTATTTG-------TG---------------------------------------------------TGTT------CTTTTATCCAGAAACCTCGTCAAATCAGAGGAGCCGA---------------------AAAA---GGTGG--------CC-------AAAATGGAG---GCTASizeHit CountTotal NormTotal
No Reads
dp5
AGGTGCTTCGGAATG--------GCAAAGAGTTATAGA--GAA---------------------AT-GTCAGTGTTATTTTGGAAACGTTAGGCACAGGTTCGA---T----------------------CGACGACAAAACC-TGTCTCA-----ACTGACATTCAATTTCCGATTTGCGTTCGTTGTTGCTCAGCCAGCCAGGTG--CGGAGAGGGGCCACAGGCAG-AAACAGAGCCAATTAGCATATC---AGA--GAGT----AC--------CGATAAGCAGAGCC----CATAATTATGATTACTCAAATTACTCGATTTGTTGACTGATTGAA--------GTT-CTTT-CT----C-----TG--ACTC--TTTTCTCTGCCTCCCCACAGAACCATTGTCAAGCCGGAGGAGCTGA---------------------AAAA---ATTGCAAGCA-CC--GACGTCCAATATGGAG---GCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................AGGCACAGGTTCGA---T----------------------CGA.......................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
..........................................................................TTATTTTGGAAACGTTAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................AGGCACAGGTTCGA---T----------------------CGAC......................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................ATTCAATTTCCGATTTGCGTT.....................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................GTTCGA---T----------------------CGACGACAAAACC-T...........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................AACCATTGTCAAGCCGGAGG........................................................................2011.0010100000000
..................................................................................................GTTCGA---T----------------------CGACGACAAAACC-TGTCTC......................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...............................................................................................................................................................GACATTCAATTTCCGATTTGCGTTCGTT.................................................................................................................................................................................................................................................................................................................2811.0010100000000
..................................................................................................................................................................ATTCAATTTCCGATTTGCGTTCGTTGTT..............................................................................................................................................................................................................................................................................................................2811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-CC--GACGTCCAATATGGAG---....2211.0010000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGAACCATTGTCAAGCCGGAGGA.......................................................................2411.0010010000000
...........................................................................................................................................................................CCGATTTGCGTTCGTTGTT..............................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................CATTCAATTTCCGATTTGCGTTCGT..................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................................................................................................................................................................CGATTTGCGTTCGTTGTTGCTCAGCC......................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................................................................GTTATTTTGGAAACGTTAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-CC--GACGTCCAATATGGAG---G...2211.0010000100000
.........................................................................GTTATTTTGGAAACGTTAGGCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................GTTATTTTGGAAACGTTAGGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................................................................................................................ATTCAATTTCCGATTTGCGTTCGTT.................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................GGCACAGGTTCGA---T----------------------CGAC......................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
....................................................................................................................................................................................GTTCGTTGTTGCTCAGCCA.....................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................TCGA---T----------------------CGACGACAAAACC-TGT.........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGCCGGAGGAGCT....................................................................1811.0010000100000
.........................................................................................................................................................................................................................GGCCACAGGCAG-AAACAGA...............................................................................................................................................................................................................................................................1911.0010100000000
droPer2
AGGTGCTTCGGAATG--------GCAAAGAGGTATAGA--GAA---------------------AT-GTCAGTGTTATTTTGGAAACGTTAGGCAAAGGTTCGA---T----------------------CGGCGACAGAACC-TGTCTCA-----ACTGACATTCAATTTCCGATTTGCGTTCGTTGTTGCTCAGCCAGCCAGGTG--CGGAGAGGGGCCACAGGCAG-AAACAGAGCCAATTAGCATATC---AGA--GAGT----AC--------CGATAAGCAGAGCC----CATAATTATGATTACTCAAATTACTCGATTTGTTGACTGATTGAA--------GTT-CTTT-CT----C-----TG--ACTC--TTTTCTCTGCCTCCCCACAGAACCATTGTCAAGCCGGAGGAGCTGA---------------------AAAA---ATTGCAAGCA-CC--GACGTCCAATATGGAG---GCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................GTTAGGCAAAGGTTCGA---T----------------------CGGCGACA..................................................................................................................................................................................................................................................................................................................................................................2611.001000001
........................................................................................................................................................................................GTTGTTGCTCAGCCAGCCA.................................................................................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................TTGAA--------GTT-CTTT-CT----C-----TG--ACT...................................................................................................................2011.001100000
......................................................................................................GA---T----------------------CGGCGACAGAACC-TG..........................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGAACCATTGTCAAGCCGGAGG........................................................................2311.001100000
...................................................................................AAACGTTAGGCAAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-CC--GACGTCCAATATGGAG---GC..2311.001001000
.............................................................................................................................................................................................................................................................................................................................TACTCGATTTGTTGACTGG............................................................................................................................................................1911.001100000
droWil2
AGAACCT---GAATG--------GCAAAA---ACAAAA--AATCCATTAGAACGCT-CTTGGCCCA-ATCAGTGTTATTTTGGAGACGTAAGGCAAAGGTTCGA---ATA-----AAGAATTTTTCGCGCAG------------------C-----ACTGACTTGCAATATACAAT-----------------ACA-----TAGGTG--GGA--------------ATT-GTTGA-ACACAATTAGCATA----------------------------CGATAAGAATGG-CCAT-AATAATTATAATTACTCAATGTG-------TGATGACTGATTGACAATGTTTGGTT-TTTT-TT----CTTTTCTGTTTTTCTTTTT---TTGTTATTTCACAGAACCGTAGTTAAAGCCGAGAAGTTACCACAACAACAACAGCAGC---AACA---GTTGC--------C-GATGTCCAAAATGGAA---GCTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................TATTTTGGAGACGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
...........................................................................................................ATA-----AAGAATTTTTCGCGCAG------------------C-----................................................................................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................GTTATTTTGGAGACGTAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.......................................................................GTGTTATTTTGGAGACGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCCGAGAAGTTACCAC...............................................................2011.00100010
.......................................................................................GTAAGGCAAAGGTTCGA---ATA-----AAGA.....................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
............................................................................ATTTTGGAGACGTAAGGCAAAGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
...........................................................................TATTTTGGAGACGTAAGGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCCGAGAAGTTACCACAAC............................................................2311.00100100
.............................................................................................................................CGCGCAG------------------C-----ACTGACTTGC......................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................TTTTGGAGACGTAAGGCAAAGGT........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGC---AACA---......................................19200.05100010
droVir3
AGGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCTCAAGTCAAGAGCGTTGA---------------------TAAGATTGTTGC--------CC-------ACGATGA---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCGTTGA---------------------TAAGATTGTTGC--------CC-------AC..............2711.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GAGGAG----CTAAA--------GAAG----------------------------------------------------------------------------------------------------------------------------------TTGCCGCA-----------------------TTACGTAG-----CGCCAG--AAA--------------AGG-CA--------------------------------------------------------------------ACTG----------------------------------------------------------------------------------------------------------------------CCAA---------------------AATG---GAAGC--------CC-------AAG-T-GGA---GCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........CTAAA--------GAAG----------------------------------------------------------------------------------------------------------------------------------TTGCCGCA-----------------------TTACGT..........................................................................................................................................................................................................................................................................................................2311.001000001
droGri2
ACAAG-----TAATG--------GTAAAA---GCCA----TTC------AACGTACGTTTGGGCCA-ATTAGTACTATTTTCGAGGCGAAAGGCAAAGGTATCG---GTGCTTTTAGTTATTTTTTTCGCAGCTGACGG-GCA-AATTTCC-----GTTTGC---------------------------TGTAGAG-----CAA------------------CAGGTGGGAGACAAAATCAATTAACATACA---TAG--T-AC----ACACACATTTTGATAAGAGTGG-C----AATCATAATAATTACTCAATGTG-------AC---------------------A-T-TATT-T------------------GTTGTG------TCTTCGTACAGTGCGTTTGT------GGACGAGTTGA---------------------AGAA---GTTGCAGCCAC--CG-------AAGGTGCCA---GCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGCGTTTGT------GGACGAG......................................................................2020.50110

Generated: 05/17/2015 at 11:14 PM