ID:

dya_75

 Coordinate:

v2_chrX_random_045:30382-30461 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.8 -20.4 -20.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Hoana6DNAhAT-Ac+
mature
star
  1. v2_chr2h_random_021:153425-153449 -
  2. dya_75  v2_chrX_random_045:30383-30407 -

Sense Strand Reads

CAAATTATGTAAAAGCCCACAAGTTATGGGGATACATAGGATATCGTCACTGATGTATTTGCAGAAACTTGTCTGGTAGCTGCATCAAATGGAGCAAGTAACTTTACAAGGTCAGAAAGAATGCCCAGTTCATCCACTGTAAATGGCCATGGTGCTTTTGATGTTGTTGGAAATACTTTG
***********************************...((((......((((..((((((.......(((((..(((.(((((.((....)).)).))).)))..)))))........)))))).))))..)))).........************************************ 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 GSM1528802
follicle cells		 V046
embryo
 V120
male body		 V058
head
 M026
head
..................................................TGATGTATTTGCAGAAACTTGTCTGG........................................................................................................ 26 0 1 109.00 109 79 15 12 3 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCAGT................................................... 25 0 2 37.00 74 41 12 16 1 4 0 0
..................................................TGATGTATTTGCAGAAACTTGTCTGGT....................................................................................................... 27 0 1 37.00 37 17 1 16 3 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCTTT...................... 26 0 2 14.00 28 17 11 0 0 0 0 0
..................................................................................................TAACTTTACAAGGTCAGAAAGAATGCC....................................................... 27 0 2 12.50 25 1 22 0 0 2 0 0
.........................................TATCGTCACTGATGTATTTGCAGAAA................................................................................................................. 26 0 1 8.00 8 0 0 8 0 0 0 0
......................................................GTATTTGCAGAAACTTGTCTGGT....................................................................................................... 23 0 1 7.00 7 0 0 7 0 0 0 0
...................................................GATGTATTTGCAGAAACTTGTCTGG........................................................................................................ 25 0 1 6.00 6 6 0 0 0 0 0 0
..................................................TGATGTATTTGCAGAAACTTGTCTG......................................................................................................... 25 0 1 6.00 6 3 0 0 3 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCAGTT.................................................. 26 0 2 4.50 9 5 0 0 1 3 0 0
..................................................TGATGTATTTGCAGAAACTTGTCTGGTA...................................................................................................... 28 0 1 4.00 4 4 0 0 0 0 0 0
..................................................TGATGTATTTGCAGAAACTTGTCT.......................................................................................................... 24 0 1 4.00 4 0 2 0 1 1 0 0
..................................................TGATGTATGTGCAGAAACTTGTCTGG........................................................................................................ 26 1 1 4.00 4 4 0 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCT........................ 27 0 2 3.50 7 2 5 0 0 0 0 0
................................................................................................................................TTCATCCACTGTAAATGGCCATGGTGC......................... 27 0 2 3.50 7 5 2 0 0 0 0 0
...............................................................................................................TCAGAAAGAATGCCCAGTTCATCCAC........................................... 26 0 2 3.50 7 2 5 0 0 0 0 0
.....................................................................TGTCTGGTAGCTGCATCAAATGGAGC..................................................................................... 26 0 2 3.00 6 5 1 0 0 0 0 0
.....................................................TGTATTTGCAGAAACTTGTCTGGTAGC.................................................................................................... 27 0 1 3.00 3 1 2 0 0 0 0 0
........................TATGGGGATACATAGGATATCGTCACT................................................................................................................................. 27 0 2 3.00 6 2 4 0 0 0 0 0
................................................................................TGCATCAAATGGAGCAAGTAACTTTAC......................................................................... 27 0 2 2.50 5 4 1 0 0 0 0 0
.........................................TATCGTCACTGATGTATTTGCAGAAAC................................................................................................................ 27 0 1 2.00 2 0 0 2 0 0 0 0
....................................................................................TCAAATGGAGCAAGTAACTTTACAAGG..................................................................... 27 0 2 2.00 4 4 0 0 0 0 0 0
..................................................TGATGTATTTGCAGAACCTTGTCTGG........................................................................................................ 26 1 1 2.00 2 0 0 2 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCAGTTCA................................................ 28 0 2 2.00 4 2 2 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTGC......................... 26 0 2 2.00 4 0 4 0 0 0 0 0
.........................................................................................................................TGCCCAGTTCATCCACTGTAAATGGCCA............................... 28 0 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCC...................................................... 22 0 2 2.00 4 0 2 0 1 1 0 0
............................................................................................................................................................TTTGATGTTGTTGGAAATACTTTG 24 0 2 2.00 4 2 1 0 1 0 0 0
.........................................TATCGTCACTGATGTATTTGCAGAAACT............................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0
....................................TAGGATATCGTCACTGATGTATTTGCA..................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................................CATCCACTGTAAATGGCCATGGTGC......................... 25 0 2 2.00 4 0 4 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCTTT...................... 29 0 2 1.50 3 1 2 0 0 0 0 0
................................TACATAGGATATCGTCACTGATGTATT......................................................................................................................... 27 0 2 1.50 3 3 0 0 0 0 0 0
..................................................................................................................................CATCCACTGTAAATGGCCATGGTGCT........................ 26 0 2 1.50 3 0 3 0 0 0 0 0
..................................................................................................................GAAAGAATGCCCAGTTCATCCACTG......................................... 25 0 2 1.50 3 2 1 0 0 0 0 0
............................................................................................................AGGTCAGAAAGAATGCCCAGTTCATC.............................................. 26 0 2 1.50 3 1 2 0 0 0 0 0
............................................................................TAGCTGCATCAAATGGAGCAAGTAACTT............................................................................ 28 0 2 1.50 3 3 0 0 0 0 0 0
.....TATGTAAAAGCCCACAAGTTATGGGGA.................................................................................................................................................... 27 0 2 1.50 3 1 0 2 0 0 0 0
................................................................................................................................TTCATCCACTGTAAATGGCCATGGTGCT........................ 28 0 2 1.50 3 1 2 0 0 0 0 0
.......................................................................................................TTACAAGGTCAGAAAGAATGCCCAGT................................................... 26 0 2 1.50 3 2 1 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCC........................ 27 1 2 1.50 3 0 3 0 0 0 0 0
........................TATGGGGATACATAGGATATCGTCAC.................................................................................................................................. 26 0 2 1.50 3 1 2 0 0 0 0 0
...........................................TCGTCACTAATGTATTTGCAGAAACT............................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCAGC................................................... 25 1 2 1.00 2 0 2 0 0 0 0 0
......................................................................................................................................CACTGTAAATGGCCATGGTGCTTT...................... 24 0 2 1.00 2 1 1 0 0 0 0 0
.........................................................TTTGCAGAAACTTGTCTGG........................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TGATGTATGTGCAGAAACTTGTCTGGTA...................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGATGGATTTGCAGAAACTTGTCTGG........................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0
................................TACATAGGATATCGTCACTGATGTAT.......................................................................................................................... 26 0 2 1.00 2 0 0 2 0 0 0 0
...............................................................................................................................................TGGCCATGGTGCTTTTGATGTTGTT............ 25 0 2 1.00 2 0 2 0 0 0 0 0
.........................................................TTTGCAGAAACTTGTCTGGTAGCTGC................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.................CACAAGTTATGGGGATACATAGGATA......................................................................................................................................... 26 0 2 1.00 2 2 0 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCTT....................... 28 0 2 1.00 2 2 0 0 0 0 0 0
..................................................TGATGTATTTGCAGAAACTTTTCTG......................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................................CAGTTCATCCACTGTAAATGGCCATGG............................ 27 0 2 1.00 2 1 1 0 0 0 0 0
.....................................................................TTTCTGGTAGCTGCATCAAATGGAGC..................................................................................... 26 1 2 1.00 2 0 2 0 0 0 0 0
.........................................................................................................................TGCCCAGTTCATCCACTGTAAATGGC................................. 26 0 2 1.00 2 1 1 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCC....................................................... 21 0 2 1.00 2 0 0 0 0 2 0 0
...........................................................................................................AAGGTCAGAAAGAATGCCCAGTTCATC.............................................. 27 0 2 1.00 2 0 2 0 0 0 0 0
..................................................TGATTTATTTGCAGAAACTTGTCTG......................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0
..............................................TCACTGATGTATTTGCAGAAACTTG............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TGATGTATTTGCAGAACCTTGTCTGGT....................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0
.....................................AGGATATCCTCACTGATGTATTTGCA..................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TGATGTATATGCAGAAACTTGTCTGG........................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCTT....................... 25 0 2 1.00 2 0 2 0 0 0 0 0
..................................................TGATGTATTTGCAGAAAGTTGTCTGG........................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0
..................................................TGATGTATTTCCAGAAACTTGTCTGG........................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCTTTT..................... 27 0 2 1.00 2 2 0 0 0 0 0 0
..................................................TGATGTATTTGCAGAAACTTGTC........................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
..........................TGGGGATACATAGGATATCGTCACTGA............................................................................................................................... 27 0 2 1.00 2 2 0 0 0 0 0 0
....................................................ATGTATTTGCAGAAACTTGTCTGGT....................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTG.......................... 25 0 2 1.00 2 2 0 0 0 0 0 0
.........................................CGTCGTCACTGATGTATTTGCAGAAAC................................................................................................................ 27 2 1 1.00 1 0 0 1 0 0 0 0
..................................................TTATGTATTTGCAGAAACTTGTCTGGT....................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
.....TATGTAAAAGCCCGCAAGTTATGGGGA.................................................................................................................................................... 27 1 2 1.00 2 0 0 2 0 0 0 0
...........................................................................................................................................................TTTTGATGTTGTTGGAAATACTT.. 23 0 2 1.00 2 2 0 0 0 0 0 0
..................................................TGCTGTATTTGCAGAAACTTGTCTGG........................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TTAGGTATTTGCAGAAACTTGTCTGG........................................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0 0
.........................................TATCGTCGCTGATGTATTTGCAGAAAC................................................................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0
..................................................TGATGTATCTGCAGAAACTTGTCTGG........................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
.........................................TATTGTCACTGATGTATTTGCAGAAACT............................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................TAATTTTACAAGGTCAGAAAGAATGCC....................................................... 27 1 2 1.00 2 0 2 0 0 0 0 0
..................................................TGATGTATTTGCAGAAACTTTTCT.......................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
...................CAAGTTATGGGGATACATAGGATATCG...................................................................................................................................... 27 0 2 1.00 2 1 1 0 0 0 0 0
.........................................................................................................................TGCCCAGTTCATCCACTGTAAATGGCCAT.............................. 29 0 2 1.00 2 2 0 0 0 0 0 0
....................................TAGGATATCGTCACTGATGTATTTGC...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TTATGTATTTGCAGAAACTTGTCTGG........................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0
.........................................TATCGTCACTGATGTATTTGCAGAGAC................................................................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................CATCCACTGTAAATGGCCATGGTGCC........................ 26 1 2 1.00 2 0 2 0 0 0 0 0
..................................................TGATGTATTTGCAGAAACTTG............................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................TACAAGGTGAGAAAGAATGCCCAGT................................................... 25 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................................................................AGAAAGAATGCCCAGTTCATCCACTG......................................... 26 0 2 1.00 2 0 2 0 0 0 0 0
...............................................................GAAACTTGTCTGGTAGCTGCATCAAA........................................................................................... 26 0 2 1.00 2 2 0 0 0 0 0 0
..................................................TGATGTATTTGCAGAAACTTGCCTG......................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0
.......................TTATGGGGATACATAGGATATCGTCACT................................................................................................................................. 28 0 2 0.50 1 0 1 0 0 0 0 0
............................................................................TAGCTGCATCAAATGGAGCAAGTAACT............................................................................. 27 0 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................GAACTTTACAAGGTCAGAAAGAATGCCC...................................................... 28 1 2 0.50 1 0 1 0 0 0 0 0
..AATTATGTAAAAGCCCACAAGT............................................................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................CAGTACAAGGTCAGAAAGAATGCCCAGT................................................... 28 2 2 0.50 1 1 0 0 0 0 0 0
................CCACAAGTTATGGGGATACATAGGATA......................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................TAACTTTACAAGGTAAGAAATAATGCC....................................................... 27 2 2 0.50 1 0 1 0 0 0 0 0
....................................................................................TCAAATGGAGCAAGTAACTTTACA........................................................................ 24 0 2 0.50 1 0 0 0 0 1 0 0
..................................................................................................TAACTTTACAAGGTCAAAAAGAATGCC....................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCAGTTC................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................TTACAAGGTCAGAAAGAATGCCCAGTT.................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................GCAAGTAACTTTACAAGGTCAGAAAGAA........................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TAAAAGGTCAGAAAGAATGCCCAGT................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGCGCTTT...................... 26 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................TGATCCACTGTAAATGGCCATGGTGCT........................ 27 1 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................TAACTTTACAAGGTCAGGAAGAATGCC....................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................TACAAGGGCAGAAAGAATGCCCAGT................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0
....................................................................................................................................TCAACTGTAAATGGCCATGGTGCTTT...................... 26 1 2 0.50 1 0 1 0 0 0 0 0
..............................................................................................................................................ATGGCCATGGTGCTTTTGATGTTGTT............ 26 0 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................TAACTTTACAAGGTCAGAAAGAATGCCC...................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0
........................TATGGGGATACATAGGATATC....................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 1
..........................TGGGGATACATAGGATATCGCCACT................................................................................................................................. 25 1 2 0.50 1 0 1 0 0 0 0 0
..........................TGGGGATACATAGGATATCGTCAC.................................................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCTATAT.................... 28 3 2 0.50 1 1 0 0 0 0 0 0
........................TATGGGCATACATAGGATATCGTCAC.................................................................................................................................. 26 1 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................................................CCCAGTTCATCCACTGTAAATGGCCA............................... 26 0 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................TGGAGCAAGTAACTTTACAAGGTCAGA................................................................ 27 0 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTGT......................... 26 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................GAATGCCCAGTTCATCCACTGTAAA..................................... 25 0 2 0.50 1 0 1 0 0 0 0 0
.....................AGTTATGGGGATACATAGGATATCG...................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATCCCCAGT................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0
...................................................................CTTGTCTGGTAGCTGCATCAAATG......................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0
..........................TGGGGATACATAGGATATCGTA.................................................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0
......ATGTAAAAGCCCACAAGTTATGGGGA.................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
................................TACATAGCATATCGTCACTGATGTAT.......................................................................................................................... 26 1 2 0.50 1 0 0 1 0 0 0 0
........................................................................................................TACAAGTTCAGAAAGAATGCCCAGTTCA................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................TCCACTGTAAACGGCCATGGTGCT........................ 24 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................TGGTGCTTTTGATGTTGTTGGAAATACTT.. 29 0 2 0.50 1 0 0 1 0 0 0 0
....................................................................TTGTCTGGTAGCTGCATCAAATGG........................................................................................ 24 0 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................................................................................TTTTGATGTTGTTGGAAATACTTTG 25 0 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................TTCATCCACTGTAAATGGCCATGGTGT......................... 27 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................AACTTGTCTGGTAGCTCCATCAAATG......................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................TAATTTGACAAGGTCAGAAAGAATGCC....................................................... 27 2 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................................GAAAGAATGCCCAGTTCATCCAC........................................... 23 0 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCAGTTCAT............................................... 29 0 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................................CCACTGTAAATGGCCATGGTGCT........................ 23 0 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................................AGTTCATCCACTGTAAATGGCCATGG............................ 26 0 2 0.50 1 1 0 0 0 0 0 0
............AAGCCCACAAGTTATGGGGA.................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGC......................... 23 0 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................................................................TGCTTTTGATGTTGTTGGAAATACTC.. 26 1 2 0.50 1 0 1 0 0 0 0 0
.......TGTAAAAGGCCACAAGTTATGGGG..................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................AACTTGTCTGGTAGCTGCATCAAATG......................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................TAACTTTAGAAGGTCAGAAAGAATGCC....................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0
....................................................................TGGTCTGGTAGCTGCATCAAATGGAGC..................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................................................TTATTCACTGTAAATGGCCATGGTGCT........................ 27 2 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCACT...................... 26 2 2 0.50 1 0 1 0 0 0 0 0
.........................................................................................................ACAAGGTCGGAAAGAATGCCCAGTTCA................................................ 27 1 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................TTCATCCACTGTAAATGGCCATGG............................ 24 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGACTGCCCAGT................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0
..................................................................................................................................CATCCACTGTAAATGGCCATGGTGCTTT...................... 28 0 2 0.50 1 1 0 0 0 0 0 0
........................TATGGGGATACATAGGATATCGTC.................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTAAGAAAGAATGCCCAGTTC................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAACGAATGCCCAGT................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................CTACAAGGTCAGAAAGAATGCCCAGTT.................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0
...................CAAGTTATGGGGATACATAGGATA......................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................TTTACAAGGTCAGAAAGAATGCC....................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTAAGAAAGAATGCCCAGT................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................TTCATCCAATGTAAATGGCCATGG............................ 24 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................GAAACTTGTCTGGTAGCTGCATCAA............................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................................AAAGAATGCCCAGTTCATCCACTGT........................................ 25 0 2 0.50 1 0 1 0 0 0 0 0
..........................................................................................................CAAGGTCAGAAAGAATGCCCAGTTC................................................. 25 0 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCTTA...................... 26 1 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................AACTTTACAAGGTCAGAAAGAATGCC....................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................................................CATTCACTGTAAATGGCCATGGTGCC........................ 26 2 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................TAACTTTACAAGGTCAGAAAGAATGTC....................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCTTC...................... 26 1 2 0.50 1 0 1 0 0 0 0 0
.........................................................................................TGGAGCAAGTAACTTTACAAGGTC................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0
.........................................................................................................................................TGTAAATGGCCATGGTGCTTTTGATT................. 26 1 2 0.50 1 0 0 0 1 0 0 0
......................................................................................................TTTACAAGGTCAGAAAGAATGCCCAGT................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0
................................................................AAACTTGTCTGGTAGCTGCATCAAA........................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................TTTCTGGTAGCTGCATCAAATGGAG...................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0
...................................................................................................................................ATCCACTGTAAATGGCCATGGTGCTTT...................... 27 0 2 0.50 1 1 0 0 0 0 0 0
................................................................................TTCATCAAATGGAGCAAGTAACTTTAC......................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................AACAAGGTCAGAAAGAATGCCCAGTTCA................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0
................................................................................TGCATCAAATGGAGCAAGTAACTT............................................................................ 24 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................ACTTTACAAGGTCAGAAAGAATGCC....................................................... 25 0 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCAG.................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0
......ATGTAAAAGCCCACAAGT............................................................................................................................................................ 18 0 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................AGCTTTACAAGGGCAGAAAGAATGCC....................................................... 26 2 2 0.50 1 0 0 0 0 0 1 0
................................................................................................................................TTCATCCACTGTAAATGGCCATGGTGCA........................ 28 1 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................CAGAAAGAATGCCCAGTTCATCCACT.......................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................CTACAAGGTCAGAAAGAATGCCCAGTTCA................................................ 29 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTA.......................... 25 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCAGTTT................................................. 27 1 2 0.50 1 0 0 0 0 1 0 0
........................................................................................................TACAAGGTCAGAAAGAATACC....................................................... 21 1 2 0.50 1 0 0 0 0 0 1 0
....................................................................................................................................TCCACTGTTAATGGCCATGGTGCTTT...................... 26 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................TTTACAAGGTCAGAAAGAATGCCCA..................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................TCAAATGGAGCAAGTAACTTT........................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TGCAAGGTCAGAAAGAATGCCCAGT................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGT........................... 21 0 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................CTTTACAAGGTCAGAAAGAATGCCCA..................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TCAGAAAGAATGACCAGTTCATCCAC........................................... 26 1 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATG............................. 22 0 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................ACAAGGTCAGAAAGAATGCCCAGT................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCCCA..................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATGCACAGT................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0
................................................................................TGCATCAAATGGAGCAAGTAACTTTACA........................................................................ 28 0 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................TGGAGCAAGTAACTTTACAAGGTCAGAAA.............................................................. 29 0 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................................ACTGTAAATGGCCATGGTGCTTT...................... 23 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................TGTCTGGTAGCTGCATCAAATGGAGCA.................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0
................................................................................................AGTAACTTTACAAGGTCAGAAAGAATGC........................................................ 28 0 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................GCAAGTAAGTTTACAAGGTCAGAAA.............................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCC........................ 24 1 2 0.50 1 0 1 0 0 0 0 0
......................................................................GTCTGGTATCTGCATCAAATGGAGC..................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................................................CACTGTAAATGGCCATGGTGCTT....................... 23 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCTC....................... 25 1 2 0.50 1 0 1 0 0 0 0 0
....TTATGTAAAAGCCCACAAGTTATG........................................................................................................................................................ 24 0 2 0.50 1 0 0 0 1 0 0 0
...............................................................................................................TCAGAAAGTATGCCCAGTTCATCCAC........................................... 26 1 2 0.50 1 1 0 0 0 0 0 0
................................TACATAGGATATCGTCACTGATGTA........................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTTAGAAAGAATGCCCAGT................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0
........................TATGGGGAGACATAGGATATCGTC.................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................GGGCTTTTGATGTTGTTGGAAATACT... 26 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................TACTAGGTCAGAAAGAATGCCCAGT................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................TTTTCAAGGTCAGAAAGAATGCCCAGT................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0
.AAATTATGTAAAAGCCCACAAGTTA.......................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
..............................................................AGAAACTTGTCTGGTAGCTGCATCAAA........................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................................GAATGCCCGGTTCATCCACTGTAAATG................................... 27 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCTTC...................... 29 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................TACAAGGTAAGAAAGAATGCCCAGTTCA................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................................TGGTCATGGTGCTTTTGATGTTGT............. 24 1 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................TGCACTGTAAATGGCCATGGTGCTTT...................... 26 1 2 0.50 1 0 1 0 0 0 0 0
...................................................................................................................AAAGAATGCCCAGTTCATCCACTGTA....................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................TACAAGGTCAGAAAGAATG......................................................... 19 0 2 0.50 1 0 0 0 0 1 0 0
....................................................................................................................................................ATGGTGCTTTTGATGCTGTTGGAAA....... 25 1 2 0.50 1 0 0 0 1 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGCT........................ 24 0 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................TCATCCACGGTAAATGGCCATGGTGCT........................ 27 1 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................CATCCACTGTAAATGGCCATGGTG.......................... 24 0 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................................................CACCCACTGTAAATGGCCATGGTGC......................... 25 1 2 0.50 1 0 1 0 0 0 0 0
...................................................................................................................................ATCCACTGTAAATGGCCATGGTGCTT....................... 26 0 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................................................................GCCATGGTGCTTTTGATGTTGTTGG.......... 25 0 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................................TGGCCATGGTGCTTTTGATGTTGT............. 24 0 2 0.50 1 0 0 0 1 0 0 0
......ATGTAAAAGCCCACAAGTTATGGGG..................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
........................TATGGGGATACATAGGATATCGTCACC................................................................................................................................. 27 1 2 0.50 1 0 1 0 0 0 0 0
....................................................................................ACAAATGGAGCAAGTAACTTTACAAGG..................................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................ACAAGGTCAGAAAGAATGCCCAGTTC................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................CAAATGGAGCAAGTAACTTTACAAGG..................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
.....................AGTTATGGGGATACATAGGATATCGT..................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................TGTCTGGTTGCTGCATCAAATGGAGCA.................................................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................TCCACTGTAAATGGCCATGGTGTTCT...................... 26 2 2 0.50 1 1 0 0 0 0 0 0
................................................................................TGCATCAATTGGAGCAAGTAACTTTA.......................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0

Anti-sense strand reads

GTTTAATACATTTTCGGGTGTTCAATACCCCTATGTATCCTATAGCAGTGACTACATAAACGTCTTTGAACAGACCATCGACGTAGTTTACCTCGTTCATTGAAATGTTCCAGTCTTTCTTACGGGTCAAGTAGGTGACATTTACCGGTACCACGAAAACTACAACAACCTTTATGAAAC
************************************...((((......((((..((((((.......(((((..(((.(((((.((....)).)).))).)))..)))))........)))))).))))..)))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M043
female body
 M056
embryo
 GSM1528802
follicle cells		 V046
embryo
 V052
head
 V058
head
..........................................................................................CCTCGTTCATTGAAATGTTCCAGT.................................................................. 24 0 2 22.00 44 15 28 0 1 0 0
....................................ATCCTATAGCAGTGACTACATAAA........................................................................................................................ 24 0 2 7.00 14 14 0 0 0 0 0
.............................................................................................................................................TTACCGGTACCACGAAAACTACAACAA............ 27 0 2 6.50 13 11 2 0 0 0 0
..........................................................................................CCTCGTTCATTGAAATGTTCCATT.................................................................. 24 1 2 5.50 11 0 11 0 0 0 0
.....................................TCCTATAGCAGTGACTACATAAA........................................................................................................................ 23 0 2 4.50 9 8 1 0 0 0 0
..............................................................................................................................................TACCGGTACCACGAAAACTACAACAA............ 26 0 2 4.50 9 9 0 0 0 0 0
........................................................................................TACCTCGTTCATTGAAATGTTCCAGT.................................................................. 26 0 2 4.00 8 2 0 6 0 0 0
.........................................................................................ACCTCGTTCATTGAAATGTTCCAGT.................................................................. 25 0 2 3.00 6 5 1 0 0 0 0
................................................................................................................................................CCGGTACCACGAAAACTACAACAA............ 24 0 2 3.00 6 5 1 0 0 0 0
...............................................................................................................................................ACCGGTACCACGAAAACTACAACAA............ 25 0 2 3.00 6 6 0 0 0 0 0
.......................................................................................TTACCTCGTTCATTGAAATGTTCCAGT.................................................................. 27 0 2 3.00 6 4 2 0 0 0 0
..................................GTATCCTATAGCAGTGACTACATAAA........................................................................................................................ 26 0 2 2.00 4 4 0 0 0 0 0
...........................................................................................CTCGTTCATTGAAATGTTCCAGT.................................................................. 23 0 2 2.00 4 2 2 0 0 0 0
.................................................................................................................................................CGGTACCACGAAAACTACAACAA............ 23 0 2 2.00 4 3 1 0 0 0 0
....................................................................................................................TTCTTACGGGTCAAGTAGGTGACAT....................................... 25 0 2 2.00 4 4 0 0 0 0 0
..........................................................................................CCTCGTTCATTGAAATGTTCCAG................................................................... 23 0 2 1.00 2 1 1 0 0 0 0
.........................................................................................ACCTCGTTCATTGAAATGTTCCAGTCT................................................................ 27 0 2 1.00 2 2 0 0 0 0 0
..........................................................................................CCTCGTTCATTGAAATGTTCTAGT.................................................................. 24 1 2 1.00 2 0 2 0 0 0 0
.................................................................................................................................................CGGTACCACGAAAACTACAA............... 20 0 2 1.00 2 2 0 0 0 0 0
...................................................................................................................TTTCTTACGGGTCAAGTAGGTGACATT...................................... 27 0 2 1.00 2 2 0 0 0 0 0
.................................................................................CGTAGTTTACCTCGTTCATTGAAATGT........................................................................ 27 0 2 0.50 1 1 0 0 0 0 0
........................................................................................TACCTCGTTCATGGAAATGTTCCAGT.................................................................. 26 1 2 0.50 1 0 0 1 0 0 0
........................................................................................AACCTCGTTCATTGAAATGTTCCAGT.................................................................. 26 1 2 0.50 1 1 0 0 0 0 0
............................................................................................................TCCAGTCTTTCTTACGGGTCAAGTAGTT............................................ 28 1 2 0.50 1 0 1 0 0 0 0
..........................................................................................CCTCGTTCATTGAAATGTTCCAGC.................................................................. 24 1 2 0.50 1 0 1 0 0 0 0
..............................................................................................................................................TACCGGTACCACGAAGACTACAACAA............ 26 1 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................TTACCGGTACCACGAAAACTACAAC.............. 25 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................TTCTTACGGGTCAAGTAGGTGACATTT..................................... 27 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................CCTCGTTCATTGAAATGTTCCA.................................................................... 22 0 2 0.50 1 0 1 0 0 0 0
...............................................................CTTTGAACAGACCATCGACGTAGTTTA.......................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
................................................................TTTGAACAGACCATAGACGTAGT............................................................................................. 23 1 2 0.50 1 1 0 0 0 0 0
...................GTTCAATACCCCTATGTATCCTATAG....................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
..............CGGGTGTTCAATACCCCTATGTATCCT........................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................TTACCGGTACCACGAAAACTACAACA............. 26 0 2 0.50 1 1 0 0 0 0 0
.....................................TCCTATAGCAGTGAATACATAAA........................................................................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
.....ATACATTTTCGGGTGTTCAAT.......................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
......................CAATACCCCTATGTATCCTATAGCAGT................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................GAAAACTACAACAACCTTTAT..... 21 0 2 0.50 1 1 0 0 0 0 0
.................GTGTTCAATACCCCTATGTATCCTA.......................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................CACGAAAACTACAACAACCTTTATGA... 26 0 2 0.50 1 1 0 0 0 0 0
.............TCGGGTGTTCAATACCCCTATGTATCCT........................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................TCTTACGGGTCAAGTAGGTGACATTT..................................... 26 0 2 0.50 1 1 0 0 0 0 0
............................................................................................................TCCAGTCTTTCTTACGGGTCAAGTAG.............................................. 26 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................CCTCGTTCATGGACATGTTCCATT.................................................................. 24 3 2 0.50 1 0 1 0 0 0 0
............................................................................................................................GGTCAAGTAGGTGACATTTACCGGT............................... 25 0 2 0.50 1 1 0 0 0 0 0
......AACATTTTCGGGTGTTCAATACCCCTAT.................................................................................................................................................. 28 1 2 0.50 1 1 0 0 0 0 0
............................................................................................................CCCAGTCTTTCTTACGGGTCAAGTAGGT............................................ 28 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................................................................GGTACCACGAAAACTACAACAA............ 22 0 2 0.50 1 1 0 0 0 0 0
...........................CCCCTATGTATCCTATAGC...................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0
...................................TATCCTATAGCAGTGACTACATAAA........................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0
........................................................................................TACCTCGTTCATTGAAATGTTCCAGTCT................................................................ 28 0 2 0.50 1 1 0 0 0 0 0
.........................................................................................ACCTCGTTCATTGAAATGTTCCAG................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................CTTACGGGTCAAGTAGGTGACAT....................................... 23 0 2 0.50 1 0 0 0 0 1 0
....................................ATCCTATAGCAGTGACTACAT........................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................TTACCTCGTTCATTGAAATGTTCCA.................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
..............CGGGTGTTCAATACCCCTATGTAT.............................................................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................TCTTACGGGTCAAGTAGGTGACATT...................................... 25 0 2 0.50 1 1 0 0 0 0 0
.....................TCAATACCCCTATGTATCCTATAGCAGT................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
.........................................................................................ACCTCGTTCATTGAAATGTTCCATT.................................................................. 25 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................GGGTCAAGTAGGTGACATTTACCG................................. 24 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................ATTTACCGGTACCACGAAAACTA.................. 23 0 2 0.50 1 1 0 0 0 0 0
.....................................TCCTATAGCAGTGACTACATAA......................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0
.....................................................................ACAGACCATCGACGTAGTTTACCTCGTT................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
..................................................................TGAACAGACCATCGACGTAGTTTACCTC...................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................CCTCGTTCATTGAAATGTTCCAGTCT................................................................ 26 0 2 0.50 1 0 1 0 0 0 0
...............................................................CTTTGAACAGACCATCTACGTAGTC............................................................................................ 25 2 2 0.50 1 1 0 0 0 0 0
......................................CCTATAGCAGTGACTACATAGA........................................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................ACCGGTACCACGAAAACTACAACA............. 24 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................GTACCACGAAAACTACAACAA............ 21 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................CCTCGTTCATTGACATGTTACAGT.................................................................. 24 2 2 0.50 1 0 0 0 1 0 0
......................................................................................................................CTTACGGGTCAAGTAGGTGACATTT..................................... 25 0 2 0.50 1 1 0 0 0 0 0
................................................................TTTGAACAGACCATCGACGTAGT............................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0
..........................ACCCCTATGTATCCTATAGCAGTGACT............................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................CCAGTCTTTCTTACGGGTCAAGTAGGT............................................ 27 0 2 0.50 1 0 1 0 0 0 0
......................................CCTATAGCAGTGACTACATAAA........................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................CGGTACCACGAAAACTACAACAACCT......... 26 0 2 0.50 1 0 1 0 0 0 0
............................................................................CTCGACGTAGTGTACCTCGAT................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 v2_chrX_random_045:30332-30511 - dya_75 CAA---ATTA-TGTA--AAAGCCCACAAGTTATGGGGATACATA-GGATATCGTCACTGATGTATTTGCAGAAACTTGTCTGGTAGCTGCATCAAATGGAGCAAGTAACTTTACAAGGTCAGAAAGAATGCCCAGTTCATCCACTGTAAATGGCCATGGTGCTTTTGATGTTGTTGGAAATACTTTG
droSec2 scaffold_473:7910-8092 + CAT---GATT-TTTGGTGCAACTCATAAATAAGAGGTATTATTACGGAAATCGAAAGAGTTTTGTTTGTCGATATCTGCACTGTGGCTTCGTGAAACTGAGCTAGAACTTGACATATCTCAACCAGAACGAACATTTCGTCCGCTGATAATGGTCTTGGATCTTTGGTTGAGTTTAGAAGCAATGCA
droSim2 node_7313:17899-18080 + CAT---GATTTTTGG--TGAAATCATAAATAAGAGGTATTATTACGGAAATCGAAAGAGTTTTGTTTGTCGATATCTGCACTGTGGCTTCGTGAAACGGAGCTAGAACTTGACATATCTCAACCAGAACGATCATTTCGTCCGCTGATAATGGTCTTGGAGCTTTGGTTGAGTTAAGAAGCACTGCA
droEug1 scf7180000409537:26433-26613 + CAA---AGTA-TGTA--ACAGACCACATGTTACGGGAATACATAACGAAACCGTCACTGAAGAATTGGAAGATACTTGCTTTGTTGCAGTATCCAATGGAGCAAGTAACTGTACCAGGTCCGTTAGGATGTCCAATTCGTCTACAGTGAACGGTTCTGGAGCTTTTGATGTACTCAACAAAACTTTG
droBia1 scf7180000302506:18244-18421 + CAA---AGTA-TGTA--A-AGACC--ATGTTATGGGAATACATAATGAAACCGTCACTGTAGAATTGGAAGATACTTGATTTGTTGCAGTATCCAATGAAGCAAGTAAATGTACCAGGTCCGTTAGGATGTCCAATTCGTCTACAGTGAACGGTTATGGAGCTCTTGATGTACTCAACAAAACTTTG
droTak1 scf7180000415992:11516-11696 + CAA---AGTA-TGTA--AAAGACCACATGTTATGGGAATACATAACGAAACCGTCACTGTAGAATTGGAAGATACTTGCTTTGTTGCAGTATCTAGTGGAGCAAGCAACTGTACCAGGTCCGTAAGGATGTCCAACTCGTCTACAGTGAACGGTTGTGGAGCTTTTGATGTACTCAACAAAACTTTG
droEle1 scf7180000490688:75226-75403 + CAA---GGTG-TGCA--GCAACCTACAAACAATTGGATTA-ATGATGATGTAGTAATAGAAGTTCTTGAAGAAACCTGCTTTGAAGTACTGTCAAAATTAGAAAAAAGTAA--CAATATCTTTCATCAAAGCGATTTCGTCAGCCGTAATCGGTGATGGTGCTTTCGAGGGACTTAAAAATATTTTC
droRho1 scf7180000763445:2460-2640 + CAA---AGTG-TGCA--AGAGACCACACGCTATTGGTATACATAATTATATCGTCACTGATGTATTAGACGATACTTGTCTTATAGCTATTTTAAATGGGGCAAGTAACTTTATGAGGTCTGATAGGATGTCCAATTCGTCCACAGTAAATGGTTGCGGTGCTTTTGATGTGCTTAGAAAAACTTTC
droFic1 scf7180000453448:507-687 + CAA---AGAA-TGCA--AAAGACCACAAGTTATTGGAATACATAAAGAAACCGTTACTGTAGAATTGGAAGATACTTGCTTTGTTGCAGTATCTAATGGAGCAAGCAACTGTAATAGGTCCGTTAGGATGTCCAGTTCGTCTGCAGTGAACGGTTGTGGTGCTTTTGATGTACTCAACAAAACTTTC
droKik1 scf7180000302471:668410-668590 + CAA---CGTA-TGCA--TAAGACCACAAGCAATAGGAATGCATATTGATATTGTTACTACTGTATTAGAAGATACTTGTTTAGTAGCTGTATCGAATGGAGCAAGTAATTTTGTTAGATCCAAAAGTATGTCTAATTCGTCCACAGTAAAAGGTTGTGGTGCTTTTGACGTATTTAGAAAAACTTTG
droAna3 scaffold_12905:464890-465070 + CAA---AGTA-TGTA--ACAGACCACATGTTATGGGAATACATAACGAAACCGTCACTGCAGAATTGGAAGATACTTGCTTTGTTGCAGTATCCAATGGAGCAAGTAACTGTACCAGGTCCGATAGGATGTCCAATTCGTCTACAGTGAACGGTTGTGGAGCTTTTGATGTACTCAACAAAACTTTG
droBip1 scf7180000394949:20026-20206 - CAA---AGTA-TGTA--ACAGGCCATATGTTATGGGAATACATAACGAAACCGTCACAGCAGAATTGGAAGATACTTGCTTTGTTGCAATATCCAATGGAGCAAGTAACTGCAACAGGTCCGTTAGAATGTCCAATTCGTCTACAGTGAACGGTTGTGGAGCTTTTGATGTACTTAACAGAACTTTG
droPer2 scaffold_408:5928-6110 - CAATGAGACTTTTTA--AAAGGCCGTTGGATAATGGAATTATCGACGAACTTGTAACTTTGCTGCTGGACGAGCACTGAGTTATGAAATAGTCAAATGGGGCTAGTAAACTTTTGAAATCTTTCAATATGCCGATTTCGTCAGCAGTCAGAGGGTCTGGGGCTCTTGAGATGCTGAGGAGAACA--G
droWil2 scf2_1100000004953:543448-543628 + AAG---AGTG-TGCA--AAAGACCATATGTAATTGGAATACATAACGATATCGTCACTGATGTATTGGACGATACTTGGCGCGTAGCAGTTTCAAATGGAGTTAGTAACTCTGTTAGGTCCGATAGGATGTCCACTTCGTCCACAGTAAATGGTTGTGGCGCTTTCCACATAGTTAAAAAAACTTTG
droMoj3 scaffold_6482:113745-113925 + TAA---ATTG-TGCA--TTAGTCCACAAGTGATCGGAATTTTAAGGGATATGGTCACTGTGGTGCTTGATGAGATCTGTTTTGTGGCACTCTCAAATGGAGACAGTAGCTTTGCCAAATCGTTTAGAAGGTCAATTTCGTCCGCAGTAAACGGAAGTGGTGCTTTAGATACCATCAAAAATACACTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CAA---ATTA-TGTA--AAAGCCCACAAGTTATGGGGATACATA-GGATATCGTCACTGATGTATTTGCAGAAACTTGTCTGGTAGCTGCATCAAATGGAGCAAGTAACTTTACAAGGTCAGAAAGAATGCCCAGTTCATCCACTGTAAATGGCCATGGTGCTTTTGATGTTGTTGGAAATACTTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................TGATGTATTTGCAGAAACTTGTCTGG........................................................................................................261109.0010907915300000012
...............................................................................................................TACAAGGTCAGAAAGAATGCCCAGT...................................................25237.007404112100400016
.........................................................TGATGTATTTGCAGAAACTTGTCTGGT.......................................................................................................27137.00370171300000016
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGCTTT......................26214.00280171100000000
.........................................................................................................TAACTTTACAAGGTCAGAAAGAATGCC.......................................................27212.5025012200020000
................................................TATCGTCACTGATGTATTTGCAGAAA.................................................................................................................2618.00800000000008
.............................................................GTATTTGCAGAAACTTGTCTGGT.......................................................................................................2317.00700000000007
..........................................................GATGTATTTGCAGAAACTTGTCTGG........................................................................................................2516.00606000000000
.........................................................TGATGTATTTGCAGAAACTTGTCTG.........................................................................................................2516.00603030000000
...............................................................................................................TACAAGGTCAGAAAGAATGCCCAGTT..................................................2624.50905010030000
.........................................................TGATGTATTTGCAGAAACTTGTCTGGTA......................................................................................................2814.00404000000000
.........................................................TGATGTATTTGCAGAAACTTGTCT..........................................................................................................2414.00400210010000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCT........................2723.50702500000000
.......................................................................................................................................TTCATCCACTGTAAATGGCCATGGTGC.........................2723.50705200000000
......................................................................................................................TCAGAAAGAATGCCCAGTTCATCCAC...........................................2623.50702500000000
............................................................................TGTCTGGTAGCTGCATCAAATGGAGC.....................................................................................2623.00605100000000
............................................................TGTATTTGCAGAAACTTGTCTGGTAGC....................................................................................................2713.00301200000000
..............................TATGGGGATACATA-GGATATCGTCACT.................................................................................................................................2723.00602400000000
.......................................................................................TGCATCAAATGGAGCAAGTAACTTTAC.........................................................................2722.50504100000000
................................................TATCGTCACTGATGTATTTGCAGAAAC................................................................................................................2712.00200000000002
...........................................................................................TCAAATGGAGCAAGTAACTTTACAAGG.....................................................................2722.00404000000000
...............................................................................................................TACAAGGTCAGAAAGAATGCCCAGTTCA................................................2822.00402200000000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTGC.........................2622.00400400000000
................................................................................................................................TGCCCAGTTCATCCACTGTAAATGGCCA...............................2822.00404000000000
...............................................................................................................TACAAGGTCAGAAAGAATGCCC......................................................2222.00400210010000
...................................................................................................................................................................TTTGATGTTGTTGGAAATACTTTG2422.00402110000000
................................................TATCGTCACTGATGTATTTGCAGAAACT...............................................................................................................2812.00201100000000
..........................................TA-GGATATCGTCACTGATGTATTTGCA.....................................................................................................................2712.00202000000000
.........................................................................................................................................CATCCACTGTAAATGGCCATGGTGC.........................2522.00400400000000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCTTT......................2921.50301200000000
......................................TACATA-GGATATCGTCACTGATGTATT.........................................................................................................................2721.50303000000000
.........................................................................................................................................CATCCACTGTAAATGGCCATGGTGCT........................2621.50300300000000
.........................................................................................................................GAAAGAATGCCCAGTTCATCCACTG.........................................2521.50302100000000
...................................................................................................................AGGTCAGAAAGAATGCCCAGTTCATC..............................................2621.50301200000000
...................................................................................TAGCTGCATCAAATGGAGCAAGTAACTT............................................................................2821.50303000000000
........TA-TGTA--AAAGCCCACAAGTTATGGGGA.....................................................................................................................................................2721.50301000000002
.......................................................................................................................................TTCATCCACTGTAAATGGCCATGGTGCT........................2821.50301200000000
..............................................................................................................TTACAAGGTCAGAAAGAATGCCCAGT...................................................2621.50302100000000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCC........................2721.50300300000000
..............................TATGGGGATACATA-GGATATCGTCAC..................................................................................................................................2621.50301200000000
...............................................................................................................TACAAGGTCAGAAAGAATGCCCAGC...................................................2521.00200200000000
.............................................................................................................................................CACTGTAAATGGCCATGGTGCTTT......................2421.00201100000000
................................................................TTTGCAGAAACTTGTCTGG........................................................................................................1911.00101000000000
......................................TACATA-GGATATCGTCACTGATGTAT..........................................................................................................................2621.00200000000002
......................................................................................................................................................TGGCCATGGTGCTTTTGATGTTGTT............2521.00200200000000
................................................................TTTGCAGAAACTTGTCTGGTAGCTGC.................................................................................................2611.00101000000000
.......................CACAAGTTATGGGGATACATA-GGATA.........................................................................................................................................2621.00202000000000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCTT.......................2821.00202000000000
....................................................................................................................................CAGTTCATCCACTGTAAATGGCCATGG............................2721.00201100000000
................................................................................................................................TGCCCAGTTCATCCACTGTAAATGGC.................................2621.00201100000000
...............................................................................................................TACAAGGTCAGAAAGAATGCC.......................................................2121.00200000020000
..................................................................................................................AAGGTCAGAAAGAATGCCCAGTTCATC..............................................2721.00200200000000
.....................................................TCACTGATGTATTTGCAGAAACTTG.............................................................................................................2511.00101000000000
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGCTT.......................2521.00200200000000
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGCTTTT.....................2721.00202000000000
.........................................................TGATGTATTTGCAGAAACTTGTC...........................................................................................................2311.00100100000000
................................TGGGGATACATA-GGATATCGTCACTGA...............................................................................................................................2721.00202000000000
...........................................................ATGTATTTGCAGAAACTTGTCTGGT.......................................................................................................2511.00101000000000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTG..........................2521.00202000000000
..................................................................................................................................................................TTTTGATGTTGTTGGAAATACTT..2321.00202000000000
.........................CAAGTTATGGGGATACATA-GGATATCG......................................................................................................................................2721.00201100000000
................................................................................................................................TGCCCAGTTCATCCACTGTAAATGGCCAT..............................2921.00202000000000
..........................................TA-GGATATCGTCACTGATGTATTTGC......................................................................................................................2611.00101000000000
.........................................................................................................................................CATCCACTGTAAATGGCCATGGTGCC........................2621.00200200000000
.........................................................TGATGTATTTGCAGAAACTTG.............................................................................................................2111.00100000010000
........................................................................................................................AGAAAGAATGCCCAGTTCATCCACTG.........................................2621.00200200000000
......................................................................GAAACTTGTCTGGTAGCTGCATCAAA...........................................................................................2621.00202000000000
.............................TTATGGGGATACATA-GGATATCGTCACT.................................................................................................................................2820.50100100000000
...................................................................................TAGCTGCATCAAATGGAGCAAGTAACT.............................................................................2720.50100100000000
..A---ATTA-TGTA--AAAGCCCACAAGT.............................................................................................................................................................2220.50101000000000
......................CCACAAGTTATGGGGATACATA-GGATA.........................................................................................................................................2720.50101000000000
...........................................................................................TCAAATGGAGCAAGTAACTTTACA........................................................................2420.50100000010000
...............................................................................................................TACAAGGTCAGAAAGAATGCCCAGTTC.................................................2720.50101000000000
..............................................................................................................TTACAAGGTCAGAAAGAATGCCCAGTT..................................................2720.50101000000000
....................................................................................................GCAAGTAACTTTACAAGGTCAGAAAGAA...........................................................2820.50101000000000
.....................................................................................................................................................ATGGCCATGGTGCTTTTGATGTTGTT............2620.50100100000000
.........................................................................................................TAACTTTACAAGGTCAGAAAGAATGCCC......................................................2820.50100100000000
..............................TATGGGGATACATA-GGATATC.......................................................................................................................................2120.50110000000000
................................TGGGGATACATA-GGATATCGTCAC..................................................................................................................................2420.50100100000000
..................................................................................................................................CCCAGTTCATCCACTGTAAATGGCCA...............................2620.50101000000000
................................................................................................TGGAGCAAGTAACTTTACAAGGTCAGA................................................................2720.50100100000000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTGT.........................2620.50101000000000
.............................................................................................................................GAATGCCCAGTTCATCCACTGTAAA.....................................2520.50100100000000
...........................AGTTATGGGGATACATA-GGATATCG......................................................................................................................................2520.50101000000000
..........................................................................CTTGTCTGGTAGCTGCATCAAATG.........................................................................................2420.50101000000000
................................TGGGGATACATA-GGATATCGTA....................................................................................................................................2220.50100010000000
.........A-TGTA--AAAGCCCACAAGTTATGGGGA.....................................................................................................................................................2620.50101000000000
............................................................................................................................................................TGGTGCTTTTGATGTTGTTGGAAATACTT..2920.50100000000001
...........................................................................TTGTCTGGTAGCTGCATCAAATGG........................................................................................2420.50100100000000
..................................................................................................................................................................TTTTGATGTTGTTGGAAATACTTTG2520.50101000000000
.......................................................................................................................................TTCATCCACTGTAAATGGCCATGGTGT.........................2720.50101000000000
.........................................................................................................................GAAAGAATGCCCAGTTCATCCAC...........................................2320.50100100000000
...............................................................................................................TACAAGGTCAGAAAGAATGCCCAGTTCAT...............................................2920.50100100000000
............................................................................................................................................CCACTGTAAATGGCCATGGTGCT........................2320.50101000000000
.....................................................................................................................................AGTTCATCCACTGTAAATGGCCATGG............................2620.50101000000000
..................AAGCCCACAAGTTATGGGGA.....................................................................................................................................................2020.50101000000000
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGC.........................2320.50100100000000
...............................................................................................................................................................TGCTTTTGATGTTGTTGGAAATACTC..2620.50100100000000
........................................................................AACTTGTCTGGTAGCTGCATCAAATG.........................................................................................2620.50101000000000
.......................................................................................................................................TTCATCCACTGTAAATGGCCATGG............................2420.50101000000000
.........................................................................................................................................CATCCACTGTAAATGGCCATGGTGCTTT......................2820.50101000000000
..............................TATGGGGATACATA-GGATATCGTC....................................................................................................................................2420.50101000000000
.........................CAAGTTATGGGGATACATA-GGATA.........................................................................................................................................2420.50101000000000
.............................................................................................................TTTACAAGGTCAGAAAGAATGCC.......................................................2320.50101000000000
......................................................................GAAACTTGTCTGGTAGCTGCATCAA............................................................................................2520.50101000000000
..........................................................................................................................AAAGAATGCCCAGTTCATCCACTGT........................................2520.50100100000000
.................................................................................................................CAAGGTCAGAAAGAATGCCCAGTTC.................................................2520.50100100000000
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGCTTA......................2620.50101000000000
..........................................................................................................AACTTTACAAGGTCAGAAAGAATGCC.......................................................2620.50100100000000
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGCTTC......................2620.50100100000000
................................................................................................TGGAGCAAGTAACTTTACAAGGTC...................................................................2420.50100100000000
................................................................................................................................................TGTAAATGGCCATGGTGCTTTTGATT.................2620.50100010000000
.............................................................................................................TTTACAAGGTCAGAAAGAATGCCCAGT...................................................2720.50101000000000
.......................................................................AAACTTGTCTGGTAGCTGCATCAAA...........................................................................................2520.50101000000000
..........................................................................................................................................ATCCACTGTAAATGGCCATGGTGCTTT......................2720.50101000000000
.......................................................................................TGCATCAAATGGAGCAAGTAACTT............................................................................2420.50101000000000
...........................................................................................................ACTTTACAAGGTCAGAAAGAATGCC.......................................................2520.50100100000000
...............................................................................................................TACAAGGTCAGAAAGAATGCCCAG....................................................2420.50101000000000
.........A-TGTA--AAAGCCCACAAGT.............................................................................................................................................................1820.50101000000000
.......................................................................................................................................TTCATCCACTGTAAATGGCCATGGTGCA........................2820.50101000000000
.......................................................................................................................CAGAAAGAATGCCCAGTTCATCCACT..........................................2620.50101000000000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTA..........................2520.50101000000000
...............................................................................................................TACAAGGTCAGAAAGAATGCCCAGTTT.................................................2720.50100000010000
.............................................................................................................TTTACAAGGTCAGAAAGAATGCCCA.....................................................2520.50101000000000
...........................................................................................TCAAATGGAGCAAGTAACTTT...........................................................................2120.50101000000000
...........................................................................................................................................TCCACTGTAAATGGCCATGGT...........................2120.50100100000000
............................................................................................................CTTTACAAGGTCAGAAAGAATGCCCA.....................................................2620.50101000000000
........................................................................................................................................TCATCCACTGTAAATGGCCATG.............................2220.50101000000000
................................................................................................................ACAAGGTCAGAAAGAATGCCCAGT...................................................2420.50101000000000
...............................................................................................................TACAAGGTCAGAAAGAATGCCCA.....................................................2320.50101000000000
.......................................................................................TGCATCAAATGGAGCAAGTAACTTTACA........................................................................2820.50101000000000
................................................................................................TGGAGCAAGTAACTTTACAAGGTCAGAAA..............................................................2920.50100100000000
..............................................................................................................................................ACTGTAAATGGCCATGGTGCTTT......................2320.50101000000000
............................................................................TGTCTGGTAGCTGCATCAAATGGAGCA....................................................................................2720.50101000000000
.......................................................................................................AGTAACTTTACAAGGTCAGAAAGAATGC........................................................2820.50100100000000
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGCC........................2420.50100100000000
.............................................................................................................................................CACTGTAAATGGCCATGGTGCTT.......................2320.50101000000000
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGCTC.......................2520.50100100000000
.......TTA-TGTA--AAAGCCCACAAGTTATG.........................................................................................................................................................2420.50100010000000
......................................TACATA-GGATATCGTCACTGATGTA...........................................................................................................................2520.50101000000000
.AA---ATTA-TGTA--AAAGCCCACAAGTTA...........................................................................................................................................................2520.50101000000000
.....................................................................AGAAACTTGTCTGGTAGCTGCATCAAA...........................................................................................2720.50100100000000
........................................................................................................................................TCATCCACTGTAAATGGCCATGGTGCTTC......................2920.50100100000000
..........................................................................................................................AAAGAATGCCCAGTTCATCCACTGTA.......................................2620.50101000000000
...............................................................................................................TACAAGGTCAGAAAGAATG.........................................................1920.50100000010000
...........................................................................................................................................TCCACTGTAAATGGCCATGGTGCT........................2420.50101000000000
.........................................................................................................................................CATCCACTGTAAATGGCCATGGTG..........................2420.50101000000000
..........................................................................................................................................ATCCACTGTAAATGGCCATGGTGCTT.......................2620.50100100000000
........................................................................................................................................................GCCATGGTGCTTTTGATGTTGTTGG..........2520.50101000000000
......................................................................................................................................................TGGCCATGGTGCTTTTGATGTTGT.............2420.50100010000000
.........A-TGTA--AAAGCCCACAAGTTATGGGG......................................................................................................................................................2520.50101000000000
..............................TATGGGGATACATA-GGATATCGTCACC.................................................................................................................................2720.50100100000000
................................................................................................................ACAAGGTCAGAAAGAATGCCCAGTTC.................................................2620.50101000000000
............................................................................................CAAATGGAGCAAGTAACTTTACAAGG.....................................................................2620.50101000000000
...........................AGTTATGGGGATACATA-GGATATCGT.....................................................................................................................................2620.50101000000000
droSec2
CAT---GATT-TTTGGTGCAACTCATAAATAAGAGGTATTATTACGGAAATCGAAAGAGTTTTGTTTGTCGATATCTGCACTGTGGCTTCGTGAAACTGAGCTAGAACTTGACATATCTCAACCAGAACGAACATTTCGTCCGCTGATAATGGTCTTGGATCTTTGGTTGAGTTTAGAAGCAATGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................CTGATAATGGTCTTGGATCTT.......................2120.5011000
.............................................................TTGTTTGTCGATATCTGCA...........................................................................................................1920.5010010
....................................TATTATTACGGAAATCGAAAGAGTT..............................................................................................................................2520.5010010
droSim2
CAT---GATTTTTGG--TGAAATCATAAATAAGAGGTATTATTACGGAAATCGAAAGAGTTTTGTTTGTCGATATCTGCACTGTGGCTTCGTGAAACGGAGCTAGAACTTGACATATCTCAACCAGAACGATCATTTCGTCCGCTGATAATGGTCTTGGAGCTTTGGTTGAGTTAAGAAGCACTGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................TTTGTTTGTCGATATCTGCACTGTGGC....................................................................................................27112.001200000019020000000
.............................................................TTGTTTGTCGATATCTGCACTGTGGC....................................................................................................26112.001200000009030000000
.............................TAAGAGGTATTATTACGGAAATCGAA....................................................................................................................................26111.001100000009020000000
..............................AAGAGGTATTATTACGGAAATCGAA....................................................................................................................................25110.0010000000010000000000
............................ATAAGAGGTATTATTACGGAAATCGAA....................................................................................................................................2717.00700000007000000000
.......................................................................................TTCGTGAAACGGAGCTAGAACTTGACA.........................................................................2714.00400000002020000000
..................................................................................................................TATCTCAACCAGAACGATCATTTCGTC..............................................2714.00400000022000000000
..............................................................................................AACGGAGCTAGAACTTGACATATCTC...................................................................2643.751500200049000000000
..............................................................TGTTTGTCGATATCTGCACTGTGGC....................................................................................................2513.00300000001020000000
.............................................................................................................TGACATATCTCAACCAGAACGATCATT...................................................2713.00300000000210000000
........................................................................TATCTGCACTGTGGCTTCGTGAAACGGAG......................................................................................2913.00300000021000000000
............................................................................TGCACTGTGGCTTCGTGAAACGGAGC.....................................................................................2613.00300000020100000000
......................................................................................................TAGAACTTGACATATCTCAACCAGAACGA........................................................2913.00300000020100000000
.............................................GGAAATCGAAAGAGTTTTGTTTGTCGA...................................................................................................................2712.00200000020000000000
.......................................................................................TTCGTGAAACGGAGCTAGAACTTGACATA.......................................................................2912.00200000002000000000
........................................................................TATCTGCACTGTGGCTTCGTGAAACG.........................................................................................2612.00200000020000000000
...................................................................................................................................................TAATGGTCTTGGAGCTTTGGTTGAGT..............2622.00400000010011100000
..........................AAATAAGAGGTATTATTACGGAAATCGAA....................................................................................................................................2912.00200000002000000000
.............................................................................................................TGACATATCTCAACCAGAACGATCAT....................................................2612.00200000010010000000
........................................................................TATCTGCACTGTGGCTTCGTGAAACGG........................................................................................2712.00200000020000000000
..........................................................................TCTGCACTGTGGCTTCGTGAAACGGAGC.....................................................................................2812.00200000020000000000
......................................................................................................................................TTTCGTCCGCTGATAATGGTCTTGGA...........................2621.50300000020001000000
...........................................................................................TGAAACGGAGCTAGAACTTGACATA.......................................................................2551.40700000032020000000
.........................TAAATAAGAGGTATTATTACGGAAATCGAAA...................................................................................................................................3111.00100000010000000000
..........................................................................TCTGCACTGTGGCTTCGTGAAACGG........................................................................................2511.00100000010000000000
.......................................................................................TTCGTGAAACGGAGCTAGAACT..............................................................................2211.00100000001000000000
................................................................................................................................................TGATAATGGTCTTGGAGCTTTGGTTGAGT..............2921.00200000002000000000
.................................................................................TGTGGCTTCGTGAAACGGAGCTAGAAC...............................................................................2711.00100000001000000000
.............................TAAGAGGTATTATTACGGAAATCGAG....................................................................................................................................2611.00100000000010000000
.......................................TATTACGGAAATCGAAAGAGTTTTGTT.........................................................................................................................2711.00100000000001000000
............................................................................................................TTGACATATCTCAACCAGAACGATCA.....................................................2611.00100000000000010000
...............................AGAGGTATTATTACGGAAATCGAAAGA.................................................................................................................................2711.00100000010000000000
............................................................................TGCACTGTGGCTTCGTGAAACGGA.......................................................................................2411.00100000000000010000
......................TCATAAATAAGAGGTATTATTACGGA...........................................................................................................................................2611.00100000000100000000
....................................................................................................................TCTCAACCAGAACGATCATTTCGTC..............................................2511.00100000010000000000
............................................................................TGCACTGTGGCTTCGTGAAACGG........................................................................................2311.00100000000100000000
..........................................................................TCTGCACTGTGGCTTCGTGAAACGGA.......................................................................................2611.00100000010000000000
.........................TAAATAAGAGGTATTATTACGGAAATCGAA....................................................................................................................................3011.00100000010000000000
.....................................................................................................CTAGAACTTGACATATCTCAACCAG.............................................................2511.00100000000100000000
....................................................................................................................TCTCAACCAGAACGATCATTTCGTCCGC...........................................2811.00100000001000000000
.............................................GGAAATCGAAAGAGTTTTGTTTGTCG....................................................................................................................2611.00100000010000000000
............................................................................TGCACTGTGGCTTCGTGAAACGGAA......................................................................................2511.00100000010000000000
...............................AGAGGTATTATTACGGAAATCGAA....................................................................................................................................2411.00100000010000000000
.............................TAAGAGGTATTATTACGGAAATCGA.....................................................................................................................................2511.00100000001000000000
.............................TAAGAGGTATTATTACGGAAATC.......................................................................................................................................2311.00100000001000000000
.........................................................................................CGTGAAACGGAGCTAGAACTTGACA.........................................................................2521.00200000000200000000
............................................................................TGCACTGTGGCTTCGTGAAACGGAGAA....................................................................................2711.00100000000000010000
..............................AAGAGGTATTATTACGGAAATCGAAAGA.................................................................................................................................2811.00100000001000000000
............................................................TTTGTTTGTCGATATCTGCACTGTGG.....................................................................................................2611.00100000001000000000
..................................................................................................................TATCTCAACCAGAACGATCATTTC.................................................2411.00100000000100000000
..............................................................................................AACGGAGCTAGAACTTGACATATCT....................................................................2541.00400000004000000000
...............................................................................................................ACATATCTCAACCAGAACGATCATT...................................................2511.00100000001000000000
.............................................................................................................................GAACGATCATTTCGTCCGC...........................................1931.00300000000300000000
..........................................................................................................ACTTGACATATCTCAACCAGAACGA........................................................2511.00100000010000000000
......................................TTATTACGGAAATCGAAAGAGTT..............................................................................................................................2311.00100000000001000000
..................................................................................................................TATCTCAACCAGAACGATCATTT..................................................2311.00100000001000000000
........................................................GAGTTTTGTTTGTCGATATCTGCACT.........................................................................................................2611.00100000010000000000
...............................................................................................ACGGAGCTAGAACTTGACATATCTCA..................................................................2640.75300000030000000000
..............................................................................................AACGGAGCTAGAACTTGACATATCTCA..................................................................2740.75300000011001000000
...............................................................................................ACGGAGCTAGAACTTGACATATCTC...................................................................2540.75300000001200000000
..............................................................................................AACGGAGCTAGAACTTGACATATC.....................................................................2440.75300000001110000000
...........................................................................................................................................TCCGCTGATAATGGTCTTGGAGCT........................2420.50100000000100000000
........................................................................................TCGTGAAACGGAGCTAGAACTTGACATA.......................................................................2820.50100000000010000000
........................................................................................................................................TCGTCCGCTGATAATGGTCTTGGAG..........................2520.50100000000010000000
.......................................................................................................................................TTCGTCCGCTGATAATGGTCTTGGAGC.........................2720.50100000000001000000
................................................................................................................................................TGATAATGGTCTTGGAGCTTTGGTTG.................2620.50100000000010000000
................................................................................................................................................TGATAATGGTCTTGGAGCTTTGGT...................2420.50100000001000000000
..........................................................................................................................................GTCCGCTGATAATGGTCTTGGAGCTT.......................2620.50100000000100000000
...........................................................................................TGAAACGGAGCTAGAACTTGACATATC.....................................................................2740.50200000000101000000
...................................................................................................................................................TAATGGTCTTGGAGCTTTGGT...................2120.50100000001000000000
......................TCATAAATAAGAGGTATTATT................................................................................................................................................2120.50100000010000000000
.........................................................................................CGTGAAACGGAGCTAGAACTTGACATA.......................................................................2720.50100100000000000000
.......................................................................................................................................TTCGTCCGCTGATAATGGTCTTGGA...........................2520.50100000010000000000
............................................................................................GAAACGGAGCTAGAACTTGACATA.......................................................................2450.40200000020000000000
.................................................................................................GGAGCTAGAACTTGACATATCTCA..................................................................2440.25100000010000000000
.............................................................................................AAACGGAGCTAGAACTTGACATATCTC...................................................................2740.25100000010000000000
.....................................................................................................CTAGAACTTGACATATCTCA..................................................................2040.25100100000000000000
............................................................................................GAAACGGAGCTAGAACTTGACATATC.....................................................................2640.25100000000001000000
...........................................................................................TGAAACGGAGCTAGAACTTGACATATCT....................................................................2840.25100000001000000000
............................................................................................GAAACGGAGCTAGAACTTGACATATCTC...................................................................2840.25100000000010000000
...........................................................................................TGAAACGGAGCTAGAACTTGACATAT......................................................................2650.20100000000100000000
..........................................................................................GTGAAACGGAGCTAGAACTTGACATA.......................................................................2650.20100000000100000000
..............................................................................................AACGGAGCTAGAACTTGACATAT......................................................................2350.20100000000100000000
droEug1
CAA---AGTA-TGTA--ACAGACCACATGTTACGGGAATACATAACGAAACCGTCACTGAAGAATTGGAAGATACTTGCTTTGTTGCAGTATCCAATGGAGCAAGTAACTGTACCAGGTCCGTTAGGATGTCCAATTCGTCTACAGTGAACGGTTCTGGAGCTTTTGATGTACTCAACAAAACTTTGSizeHit CountTotal NormTotal
No Reads
droBia1
CAA---AGTA-TGTA--A-AGACC--ATGTTATGGGAATACATAATGAAACCGTCACTGTAGAATTGGAAGATACTTGATTTGTTGCAGTATCCAATGAAGCAAGTAAATGTACCAGGTCCGTTAGGATGTCCAATTCGTCTACAGTGAACGGTTATGGAGCTCTTGATGTACTCAACAAAACTTTGSizeHit CountTotal NormTotal
No Reads
droTak1
CAA---AGTA-TGTA--AAAGACCACATGTTATGGGAATACATAACGAAACCGTCACTGTAGAATTGGAAGATACTTGCTTTGTTGCAGTATCTAGTGGAGCAAGCAACTGTACCAGGTCCGTAAGGATGTCCAACTCGTCTACAGTGAACGGTTGTGGAGCTTTTGATGTACTCAACAAAACTTTGSizeHit CountTotal NormTotal
No Reads
droEle1
CAA---GGTG-TGCA--GCAACCTACAAACAATTGGATTA-ATGATGATGTAGTAATAGAAGTTCTTGAAGAAACCTGCTTTGAAGTACTGTCAAAATTAGAAAAAAGTAA--CAATATCTTTCATCAAAGCGATTTCGTCAGCCGTAATCGGTGATGGTGCTTTCGAGGGACTTAAAAATATTTTCSizeHit CountTotal NormTotal
No Reads
droRho1
CAA---AGTG-TGCA--AGAGACCACACGCTATTGGTATACATAATTATATCGTCACTGATGTATTAGACGATACTTGTCTTATAGCTATTTTAAATGGGGCAAGTAACTTTATGAGGTCTGATAGGATGTCCAATTCGTCCACAGTAAATGGTTGCGGTGCTTTTGATGTGCTTAGAAAAACTTTCSizeHit CountTotal NormTotal
No Reads
droFic1
CAA---AGAA-TGCA--AAAGACCACAAGTTATTGGAATACATAAAGAAACCGTTACTGTAGAATTGGAAGATACTTGCTTTGTTGCAGTATCTAATGGAGCAAGCAACTGTAATAGGTCCGTTAGGATGTCCAGTTCGTCTGCAGTGAACGGTTGTGGTGCTTTTGATGTACTCAACAAAACTTTCSizeHit CountTotal NormTotal
No Reads
droKik1
CAA---CGTA-TGCA--TAAGACCACAAGCAATAGGAATGCATATTGATATTGTTACTACTGTATTAGAAGATACTTGTTTAGTAGCTGTATCGAATGGAGCAAGTAATTTTGTTAGATCCAAAAGTATGTCTAATTCGTCCACAGTAAAAGGTTGTGGTGCTTTTGACGTATTTAGAAAAACTTTGSizeHit CountTotal NormTotal
No Reads
droAna3
CAA---AGTA-TGTA--ACAGACCACATGTTATGGGAATACATAACGAAACCGTCACTGCAGAATTGGAAGATACTTGCTTTGTTGCAGTATCCAATGGAGCAAGTAACTGTACCAGGTCCGATAGGATGTCCAATTCGTCTACAGTGAACGGTTGTGGAGCTTTTGATGTACTCAACAAAACTTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................TGGAAGATACTTGCTTTGTTGCAGT.................................................................................................2517.007060010
......................................TACATAACGAAACCGTCACTGCAGAAT..........................................................................................................................2716.006320010
......................................TACATAACGAAACCGTCACTGCAGA............................................................................................................................2516.006150000
..........................................TAACGAAACCGTCACTGCAGAATTGG.......................................................................................................................2615.005320000
................................................................................................................................TGTCCAATTCGTCTACAGTGAACGGT.................................2615.005050000
................................................................TTGGAAGATACTTGCTTTGTTGCAGT.................................................................................................2614.004021010
.............TA--ACAGACCACATGTTATGGGAATACA.................................................................................................................................................2733.33100100000
..........................................TAACGAAACCGTCACTGCAGAATTGGA......................................................................................................................2713.003030000
................................TGGGAATACATAACGAAACCGTCACTG................................................................................................................................2722.505310010
.........................................................................................................................GATAGGATGTCCAATTCGTCTACAGT........................................2612.002020000
...................................................................................................................................................GAACGGTTGTGGAGCTTTTGA...................2112.002000002
.............TA--ACAGACCACATGTTATGGGAATAC..................................................................................................................................................2632.006130020
CAA---AGTA-TGTA--ACAGACCACATGTT............................................................................................................................................................2532.006240000
...........................................................................................TCCAATGGAGCAAGTAACTGTACCAGG.....................................................................2712.002100010
.............................................................................................................TGTACCAGGTCCGATAGGATGTCC......................................................2412.002020000
.......................................................................................................................................TTCGTCTACAGTGAACGGTTGTGGAGC.........................2712.002200000
...........TGTA--ACAGACCACATGTTATGGGAAT....................................................................................................................................................2631.675001040
.............TA--ACAGACCACATGTTATGGGAAT....................................................................................................................................................2431.675002030
CAA---AGTA-TGTA--ACAGACCACATGTTATG.........................................................................................................................................................2831.334121000
.......................................................................................................................................TTCGTCTACAGTGAACGGTTGTGGA...........................2511.001010000
.....................................................TCACTGCAGAATTGGAAGATACT...............................................................................................................2311.001000001
...................................................................................................................AGGTCCGATAGGATGTCCAATTCGC...............................................2511.001010000
.............................................................................................................................................TACAGTGAACGGTTGTGGAGCTTTTG....................2611.001100000
...............................................AAACCGTCACTGCAGAATTGGAAGATA.................................................................................................................2711.001010000
......................................................................................................................TCCGATAGGATGTCCAATTCGTCTACA..........................................2711.001100000
.................................................................TGGAAGATACTTGCTTTGTTGCAGC.................................................................................................2511.001010000
.........................................................................................TATCCAATGGAGCAAGTAACTGTACCAGG.....................................................................2911.001100000
.........................................................................................................TAACTGTACCAGGTCCGATAGGATG.........................................................2511.001001000
.........................................................................................TATCCAATGGAGCAAGTAACTGTACC........................................................................2611.001000010
......................................TACATAACGAAACCGTCACTGCAGAATTG........................................................................................................................2911.001100000
.............................................................................................................TGTACCAGGTCCGATAGGATGTCCAAT...................................................2711.001100000
..............................................................................................................................GATGTCCAATTCGTCTACAGTGAACGGC.................................2811.001010000
.........................................................TGCAGAATTGGAAGATACTTGCTTTGT.......................................................................................................2711.001000010
........................................................................................................................................TCGTCTACAGTGAACGGTTGTGGAGCTT.......................2811.001010000
.............................................................................................................................................TACAGTGAACGGTTGTGGAGCTTTT.....................2511.001010000
.......................................................................................................................................TTCGTCTACAGTGAACGGTTGTGG............................2411.001010000
............................................................................................................CTGTACCAGGTCCGATAGGATG.........................................................2211.001001000
..............................................................................................................GTACCAGGTCCGATAGGATGTCCAAT...................................................2611.001010000
..................................................................................................................................TCCAATTCGTCTACAGTGAACGGT.................................2411.001010000
.....................................................TCACTGCAGAATTGGAAGATACTTGC............................................................................................................2611.001000010
................................................................................................TGGAGCAAGTAACTGTACCAGGTCC..................................................................2511.001100000
.......................................................................................................................................TTCGTCTACAGTGAACGGTTGTG.............................2311.001001000
.............TA--ACAGACCACATGTTATGGGAATA...................................................................................................................................................2531.003030000
...........TGTA--ACAGACCACATGTTATGGGA......................................................................................................................................................2431.003100011
..........................................TAACGAAACCGTCACTGCAGAATTGGT......................................................................................................................2711.001100000
....................................................................................TGCAGTATCCAATGGAGCAAGTAACTG............................................................................2711.001000010
CAA---AGTA-TGTA--ACAGACCACATGT.............................................................................................................................................................2431.003111000
..........................................TAACGAAACCGTCACTGCAGAATTGGAA.....................................................................................................................2811.001100000
........................................CATAACGAAACCGTCACTGCAGAAT..........................................................................................................................2511.001010000
.................................................ACCGTCACTGCAGAATTGGAAGATA.................................................................................................................2511.001000010
.........................................................................................................TAACTGTACCAGGTCCGATAGGATGTCC......................................................2811.001010000
..........................................................................................................AACTGTACCAGGTCCGATAGGATGT........................................................2511.001100000
...........................................................................................................................TAGGATGTCCAATTCGTCTACAGTGAA.....................................2711.001010000
...........................................................................................TCCAATGGAGCAAGTAACTGTACCAG......................................................................2611.001001000
......................................TACATAACGAAACCGTCACTGCAGAAA..........................................................................................................................2711.001010000
...................................................................................TTGCAGTATCCAATGGAGCAAGTA................................................................................2421.002010010
....................................................................................................................................CAATTCGTCTACAGTGAACGGTTGTGGA...........................2811.001010000
................................................................................................................................TGTCCAATTCGTCTACAGTGAACGGC.................................2611.001010000
.............................................CGAAACCGTCACTGCAGAATTGGA......................................................................................................................2411.001100000
......................................TACATAACGAAACCGTCACTGCAGAA...........................................................................................................................2611.001010000
CAA---AGTA-TGTA--ACAGACCACATGTTA...........................................................................................................................................................2630.672200000
CAA---AGTA-TGTA--ACAGACCACATGTTAT..........................................................................................................................................................2730.672110000
....................................................................................TGCAGTATCCAATGGAGCAAGTAAC..............................................................................2520.501000010
....................................................................................TGCAGTATCCAATGGAGCAAGTA................................................................................2320.501000010
................................TGGGAATACATAACGAAACCGTCAC..................................................................................................................................2520.501010000
.................................................................................TGTTGCAGTATCCAATGGAGCAAGTA................................................................................2620.501010000
....................................................................................TGCAGTATCCAATGGAGCAAG..................................................................................2120.501001000
.................................GGGAATACATAACGAAACCGTCACT.................................................................................................................................2520.501100000
..............................TATGGGAATACATAACGAAACCGTCAC..................................................................................................................................2720.501010000
................................................................................TTGTTGCAGTATCCAATGGAGCAAGT.................................................................................2620.501001000
.AA---AGTA-TGTA--ACAGACCACATGTTATG.........................................................................................................................................................2730.331001000
..A---AGTA-TGTA--ACAGACCACATGTTA...........................................................................................................................................................2430.331001000
..A---AGTA-TGTA--ACAGACCACATGTT............................................................................................................................................................2330.331010000
CAA---AGTA-TGTA--ACAGACCACATGC.............................................................................................................................................................2430.331010000
...........TGTA--ACAGACCACATGTTATGGGAATACA.................................................................................................................................................2930.331010000
.......GTA-TGTA--ACAGACCACATGTTA...........................................................................................................................................................2230.331001000
.............TA--ACAGACCACATGTTATGGGAA.....................................................................................................................................................2330.331000010
...........TGTA--ACAGACCACATGTTATGGGAATAC..................................................................................................................................................2830.331010000
...........TGTA--ACAGACCACATGTTATGGGAAA....................................................................................................................................................2630.331000010
.................ACAGACCACATGTTATGGGAATACATA...............................................................................................................................................2730.331010000
..A---AGTA-TGTA--ACAGACCACATGTTATG.........................................................................................................................................................2630.331010000
...........TGTA--ACAGACCACATGTTATGGGAATA...................................................................................................................................................2730.331000001
CAA---AGTA-TGTA--ACAGACCACA................................................................................................................................................................2130.331010000
.AA---AGTA-TGTA--ACAGACCACATGTTA...........................................................................................................................................................2530.331010000
droBip1
CAA---AGTA-TGTA--ACAGGCCATATGTTATGGGAATACATAACGAAACCGTCACAGCAGAATTGGAAGATACTTGCTTTGTTGCAATATCCAATGGAGCAAGTAACTGCAACAGGTCCGTTAGAATGTCCAATTCGTCTACAGTGAACGGTTGTGGAGCTTTTGATGTACTTAACAGAACTTTGSizeHit CountTotal NormTotal
No Reads
droPer2
CAATGAGACTTTTTA--AAAGGCCGTTGGATAATGGAATTATCGACGAACTTGTAACTTTGCTGCTGGACGAGCACTGAGTTATGAAATAGTCAAATGGGGCTAGTAAACTTTTGAAATCTTTCAATATGCCGATTTCGTCAGCAGTCAGAGGGTCTGGGGCTCTTGAGATGCTGAGGAGAACA--GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................TATCGACGAACTTGTAACTTTGC.............................................................................................................................2331.003030000
......................................TTATCGACGAACTTGTAACTTTGC.............................................................................................................................2431.003030000
.....................................ATTATCGACGAACTTGTAACTT................................................................................................................................2230.331010000
......................................TTATCGACGAACTTGTAACTT................................................................................................................................2130.331010000
............................................ACGAACTTGTAACTTTGC.............................................................................................................................1830.331010000
......................................TTATCGACGAACTTGTAACTTTGCT............................................................................................................................2530.331100000
.....................................ATTATCGACGAACTTGTAACTTTGC.............................................................................................................................2530.331010000
......................................TTATCGACGAACTTGTAACTTTGCA............................................................................................................................2530.331100000
......................................TTATCGACGAACTTGTAACTTTGCG............................................................................................................................2530.331100000
....................................AATTATCGACGAACTTGTAACTT................................................................................................................................2330.331010000
.......................................TATCGACGAACTTGTAACTTTGCT............................................................................................................................2430.331010000
..................................GGAATTATCGACGAACTTGTAACTTTGC.............................................................................................................................2830.331010000
droWil2
AAG---AGTG-TGCA--AAAGACCATATGTAATTGGAATACATAACGATATCGTCACTGATGTATTGGACGATACTTGGCGCGTAGCAGTTTCAAATGGAGTTAGTAACTCTGTTAGGTCCGATAGGATGTCCACTTCGTCCACAGTAAATGGTTGTGGCGCTTTCCACATAGTTAAAAAAACTTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................AAATGGTTGTGGCGCTTTCCA...................2112.00202000
...................................................CGTCACTGATGTATTGGACGATACT...............................................................................................................2511.00100010
.................................................................TGGACGATACTTGGCGCGTAGCAGT.................................................................................................2511.00101000
............................................................................TGGCGCGTAGCAGTTTCAAATGGAGT.....................................................................................2611.00100010
........................................................................TACTTGGCGCGTAGCAGTTTCAAAT..........................................................................................2511.00100010
....................................................................................AGCAGTTTCAAATGGAGTTAGTAACTC............................................................................2711.00110000
...............................................................ATTGGACGATACTTGGCGCGTAGCAG..................................................................................................2611.00101000
......................................................................................................TAGTAACTCTGTTAGGTCCGATAGGATG.........................................................2811.00100010
..............................................................TATTGGACGATACTTGGCGCGTAGCAGT.................................................................................................2811.00101000
droMoj3
TAA---ATTG-TGCA--TTAGTCCACAAGTGATCGGAATTTTAAGGGATATGGTCACTGTGGTGCTTGATGAGATCTGTTTTGTGGCACTCTCAAATGGAGACAGTAGCTTTGCCAAATCGTTTAGAAGGTCAATTTCGTCCGCAGTAAACGGAAGTGGTGCTTTAGATACCATCAAAAATACACTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCGCAG.........................................25155.00555220010
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCGCAGT........................................26152.005226200231
..................................................................................................................................................TAAACGGAAGTGGTGCTTTAGATACCATC............29124.00249000150
.....................................................................................................................................................ACGGAAGTGGTGCTTTAGATACCATC............26118.00187000110
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCGCAGTA.......................................27112.00121100010
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCGCAGC........................................2616.006000060
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCGCA..........................................2416.006410010
..........................................................................................................................TTAGAAGGTCAATTTCGTCCGCAG.........................................2415.005500000
.................................................................TTGATGAGATCTGTTTTGTGGCACT.................................................................................................2534.6714400064
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCGC...........................................2314.004400000
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCGCAGTAA......................................2814.004300010
.................................................................TTGATGAGATCTGTTTTGTGGCACTC................................................................................................2633.67111000100
.....................................................................TGAGATCTGTTTTGTGGCACTCTCAAA...........................................................................................2732.337700000
................................TCGGAATTTTAAGGGATATGGTCAC..................................................................................................................................2532.337200050
..................................................................TGATGAGATCTGTTTTGTGGCACTC................................................................................................2532.337300040
...................................................................................................................................................AAACGGAAGTGGTGCTTTAGATACCATC............2812.002100010
...........................................................................................................................TAGAAGGTCAATTTCGTCCGCAGTA.......................................2512.002200000
...............................................................................................................................................................TGCTTTAGATACCATCAAAAATACACTA2812.002200000
...........................................................................................................................TAGAAGGTCAATTTCGTCCGCAGT........................................2412.002100010
....................................................................................................................................................AACGGAAGTGGTGCTTTAGATACCATC............2712.002100010
..................................................................................................................................................TAAACGGAAGTGGTGCTTTAGATACC...............2612.002000020
.................................................................TTGATGAGATCTGTTTTGTGGC....................................................................................................2231.675000023
.............................TGATCGGAATTTTAAGGGATATGG......................................................................................................................................2431.675400010
.....................................................................TGAGATCTGTTTTGTGGCACTCTC..............................................................................................2431.675500000
...................................................................GATGAGATCTGTTTTGTGGCACTC................................................................................................2431.334200020
.....................................................................TGAGATCTGTTTTGTGGCACTCT...............................................................................................2331.334300010
.....................................................................TGAGATCTGTTTTGTGGCACTC................................................................................................2231.334000040
................................................................................................TGGAGACAGTAGCTTTGCCAAATCGTT................................................................2711.001100000
......................................................................................................................................................CGGAAGTGGTGCTTTAGATACCATC............2511.001100000
................................................................................................TGGAGACAGTAGCTTTGCCAAATCG..................................................................2511.001100000
...............................................................................................................TGCCAAATCGTTTAGAAGGTCAATTTC.................................................2711.001000010
..................................................................................................................................................TAAACGGAAGTGGTGCTTTAGATACCA..............2711.001100000
................................TCGGAATTTTAAGGGATATGGTCACTGT...............................................................................................................................2831.003100020
...................................................................................................................................................AAACGGAAGTGGTGCTTTAGATACCA..............2611.001100000
..........................................................................................................................TTAGAAGGTCAATTTCGTCCGCAGTA.......................................2611.001100000
..............................................................TGCTTGATGAGATCTGTTTTGTGGC....................................................................................................2531.003110010
.......................................................................................................................................TTCGTCCGCAGTAAACGGAAGTGGTG..........................2611.001100000
................................................................................................TGGAGACAGTAGCTTTGCCAAATA...................................................................2411.001000010
...............................................................................................................................................................TGCTTTAGATACCATCAAAAATACA...2511.001000010
.........................................................................................................................TTTAGAAGGTCAATTTCGTCC.............................................2111.001000010
...............................................................................................................TGCCAAATCGTTTAGAAGGT........................................................2011.001100000
...............................................................................................................................AGGTCAATTTCGTCCGCAG.........................................1911.001100000
.................................................................................................GGAGACAGTAGCTTTGCCAAATTA..................................................................2411.001100000
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCG............................................2211.001100000
.........................................................................................................................TTTAGAAGGTCAATTTCGTCCGCAGA........................................2611.001010000
...........................................................................................TCAAATGGAGACAGTAGCTTTGCCAAATC...................................................................2911.001100000
.........................................................................................TCTCAAATGGAGACAGTAGCTTTGCC........................................................................2611.001000010
.............................................................................................................................GAAGGTCAATTTCGTCCGCAG.........................................2111.001100000
..............................................................................................................................AAGGTCAATTTCGTCCGCAGTA.......................................2211.001100000
........................................................................................................................GTTTAGAAGGTCAATTTCGTCCGCAG.........................................2611.001100000
................................................................................................TGGAGACAGTAGCTTTGCCCC......................................................................2111.001100000
...................................................................................................................................CAATTTCGTCCGCAGTAAACG...................................2111.001010000
.................................................................TTGATGAGATCTGTTTTGTGGCACC.................................................................................................2531.003000030
.............................................................................................................................................CGCAGTAAACGGAAGTGGTGC.........................2111.001010000
..........................................................................................................................TTAGAAGGTCAATTTCGTCCGCAGT........................................2511.001100000
.................................................................................................GGAGACAGTAGCTTTGCCAAATCGTT................................................................2611.001100000
......................................................................................................................TCGTTTAGAAGGTCAATTTCGTCCG............................................2511.001100000
.....................................................................TGAGATCTGTTTTGTGGCACTCTCA.............................................................................................2531.003200010
..............................................................TGCTTGATGAGATCTGTTTTGTGG.....................................................................................................2430.672200000
..............................................................TGCTTGATGAGATCTGTTTTGTGGCAC..................................................................................................2730.672200000
.......................................TTTAAGGGATATGGTCACTGTGG.............................................................................................................................2330.672100001
..............................................................TGCTTGATGAGATCTGTTTTGTGGCA...................................................................................................2630.672100001
................................TCGGAATTTTAAGGGATATGGTCACT.................................................................................................................................2630.672000020
................................TCGGAATTTTAAGGGATATGGTCACTG................................................................................................................................2730.672200000
..............................................................TGCTTGATGAGATCTGTTTTGTGGCACT.................................................................................................2830.672000020
.......................................TTTAAGGGATATGGTCACTGTGGTGC..........................................................................................................................2630.672010010
..........................AAGTGATCGGAATTTTAAGGGATATGG......................................................................................................................................2730.672200000
......................................TTTTAAGGGATATGGTCACTGTGGTGC..........................................................................................................................2730.672100010
..........................................................................TCTGTTTTGTGGCACTCTCAAATGG........................................................................................2530.331100000
.....................................................................TGAGATCTGTTTTGTGGCACTCTT..............................................................................................2430.331000010
................................................................CTTGATGAGATCTGTTTTGTGGC....................................................................................................2330.331100000
TAA---ATTG-TGCA--TTAGTCC...................................................................................................................................................................1830.331000010
.........................................TAAGGGATATGGTCACTGTGGTGC..........................................................................................................................2430.331000010
.............................TGATCGGAATTTTAAGGGATATGGT.....................................................................................................................................2530.331100000
..................................................................TGATGAGATCTGTTTTGTGGCACTCTC..............................................................................................2730.331100000
......................................TTTTAAGGGATATGGTCACTGTGGTG...........................................................................................................................2630.331100000
.................................................................TTGATGAGATCTGTTTTGTGGCACTCT...............................................................................................2730.331100000
........................................TTAAGGGATATGGTCACTGTGGTG...........................................................................................................................2430.331000010
.....................TCCACAAGTGATCGGAATTTTA................................................................................................................................................2230.331100000
......................................................................GAGATCTGTTTTGTGGCACTCTCA.............................................................................................2430.331100000
.....................TCCACAAGTGATCGGAATTTTAAGGGA...........................................................................................................................................2730.331000010
.................................................................TTGATGAGATCTGTTTTGTGGCAC..................................................................................................2430.331000010
.................................................................TTGATGAGATCTGTTTTGTGG.....................................................................................................2130.331100000
..................................................................TGATGAGATCTGTTTTGTGGCACT.................................................................................................2430.331000001
TAA---ATTG-TGCA--TTAGTCCACAAGT.............................................................................................................................................................2430.331100000
...................................................................GATGAGATCTGTTTTGTGGCACT.................................................................................................2330.331000010
.....................................................................TGAGATCTGTTTTGTGGCAC..................................................................................................2030.331100000
....................................AATTTTAAGGGATATGGTCAC..................................................................................................................................2130.331000010
......................CCACAAGTGATCGGAATTTTAAGGGA...........................................................................................................................................2630.331100000
............................................................................TGTTTTGTGGCACTCTCAAATGGAGACAG..................................................................................2930.331100000
.............................TGATCGGAATTTTAAGGGATATGGTCACT.................................................................................................................................2930.331000010
............................................................GGTGCTTGATGAGATCTGTTTTG........................................................................................................2330.331100000
...................................................................GATGAGATCTGTTTTGTGGCACTCTC..............................................................................................2630.331100000
......................................................................GAGATCTGTTTTGTGGCACTCTC..............................................................................................2330.331100000
.......................................TTTAAGGGATATGGTCACTGTGGTGCT.........................................................................................................................2730.331000010
......................................................................GAGATCTGTTTTGTGGCACTCTCAAA...........................................................................................2630.331100000
......................CCACAAGTGATCGGAATTTTAAGGGATA.........................................................................................................................................2830.331100000
.AA---ATTG-TGCA--TTAGTCCAC.................................................................................................................................................................1930.331000010

Generated: 05/15/2015 at 03:38 PM