ID:

dya_634

 Coordinate:

2R:20473626-20473776 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.1 -12.8

Flybase annnotation

exon [dyak_GLEANR_11765:3]; CDS [Dyak\GE11433-cds]; intron [Dyak\GE11433-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGGCTCGACACTGGTTTTGTCGCCTTATCAGCTATCAGCTAATGATTACAAAGCAAATATGTGCGTTCTTCGTTGTCAGCTTCGAGTCTGACCCATGCCCGGATGTCCCGTCAATTCGGTGGCCAGTAGTTCAGGTTAGTCGGGTCTGTCTGTTCGTCAGGGAACAGTCTGTCTTCGAGACATTGTTTAGTTCCGAGCAGGACCCAAAATCACAGCAATTAGCGCGGAATTAACGACCGATTTCAACATG
**************************************************************************************************************************************************.....((((((.....((((((..(((((...))))))))))).....))))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total V120
male body		 M043
female body
 V058
head
 M056
embryo
 V052
head
 M026
head
..................................................................................................................................................CTGTCTGTTCGTCAGGGAACA.................................................................................... 21 0 1 4.00 4 2 1 0 0 1 0
...........................................................................................................................................................CGTCAGGGAACAGTCTGTCTT........................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................GACATTGTTTAGTTCCGAGCA................................................... 21 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................CAGGTTAGTCGGGTCTGTCTGTTC............................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
...........................................................................................................................................................CGTCAGGGAACAGTCTGTCTTCGAGAC..................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................AGTTCAGGTTAGTCGGGT......................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................GACCCAAAATCACAGCAATTAGCGCGGA...................... 28 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................GTCTTCGAGACATTGTTTAGTTCCGAGC.................................................... 28 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................AAAATCACAGCAATTAGCGCGGA...................... 23 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................................ATCACAGCAATTAGCGCGGAAT.................... 22 0 1 1.00 1 0 0 0 1 0 0
......................................................................................................................................................................................ATTGTTTAGTTCCGAGCAGG................................................. 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................GTCAGGGAACAGTCTGTCTT........................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................GAACAGTCTGTCTTCGAGACATTGT................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................TTGTTTAGTTCCGAGCAGGA................................................ 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................AGTCGGGTCTGTCTGTTCGTC............................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................CGTCAGGGAACAGTCTGTCTTCGA........................................................................ 24 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................AATTAGCGCGGAATTAACGACCG........... 23 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................GTCTGTCTGTTCGTCAGGGAACAGTCTGT.............................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................TTCGTCAGGGAACAGTCTGT.............................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................TCAGGGAACAGTCTGTCTTC.......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................CGGGTCTGTCTGTTCGTCAGGGAACA.................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................AAATCACAGCAATTAGCGCGG....................... 21 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................CAGCAATTAGCGCGGAATTAACGACC............ 26 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................TTCGTCAGGGAACAGTCTGTCTTCGAGA...................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................GTTCGTCAGGGAACAGTCTGTCTTCGAGA...................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................CGTCAGGGAACAGTCTGTC............................................................................. 19 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................TCAGGTTAGTCGGGTCTGTCTGTT................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GACCCAAAATCACAGCAATTAGCGCGGAA..................... 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................ATCACAGCAATTAGCGCGG....................... 19 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................CATTGTTTAGTTCCGAGCAG.................................................. 20 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................GTAGTTCAGGTTAGTCGGGTCT....................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................GTTCAGGTTAGTCGGGTCT....................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................CGTCAGGGAACAGTCTGTCTTCGAGA...................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................ATCACAGCGATTAGCGCGGA...................... 20 1 2 0.50 1 0 1 0 0 0 0
............................................................................................................................................................................TCTTCGAAACTTTGTTTAGT........................................................... 20 2 3 0.33 1 0 1 0 0 0 0
.....................................................................................AGTCTGACACCTGCCCGG.................................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0
.............................................................................................................................................................................CTTCGAAACTTTGTTTAGTT.......................................................... 20 2 6 0.17 1 0 1 0 0 0 0
..............................................................................................................................................GGGTTTGACTGTTCGTCA........................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0
..................................................................................................CCCGGGTGTCCCCTCAA........................................................................................................................................ 17 2 6 0.17 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................GTAATTAGCGGGGAATTACC................ 20 3 7 0.14 1 0 0 0 1 0 0
......................................................................................GTCTGACGCCTGCCCGGT................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 2

Anti-sense strand reads

GACCGAGCTGTGACCAAAACAGCGGAATAGTCGATAGTCGATTACTAATGTTTCGTTTATACACGCAAGAAGCAACAGTCGAAGCTCAGACTGGGTACGGGCCTACAGGGCAGTTAAGCCACCGGTCATCAAGTCCAATCAGCCCAGACAGACAAGCAGTCCCTTGTCAGACAGAAGCTCTGTAACAAATCAAGGCTCGTCCTGGGTTTTAGTGTCGTTAATCGCGCCTTAATTGCTGGCTAAAGTTGTAC
***************************************************.....((((((.....((((((..(((((...))))))))))).....))))))************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V058
head
 M056
embryo
....................................................................................................................................................................................................TAGTCCTGGGTTTTACTGGCGT................................. 22 3 1 1.00 1 1 0
.......................GGAATAGTCAATAGGCGTTT................................................................................................................................................................................................................ 20 3 9 0.11 1 1 0
............................................................................................................................................................................AGCAGCTTTGAAACAAATCA........................................................... 20 3 19 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:20473576-20473826 - dya_634 CTGGCTCGA--CACTGG---TTTTGTCG-CCTTATCAGCTATCAGCTAATGATTACAAAGCAAATATGTGCGTTCTTC----------------------GTTGTCAGCTTC--GAGTCTGACCCATGCCCGGATGT-------------CCCGTCAAT------TCGGTGGCCAG-TAGTTCAGGTTAGTCGGGTCTGTCTG-----T-TCGTCAGGG-----AA-----CAGTCT-----GTCTTCGAGA--------------------------------------CATTGTTTAGTTCCGAGCA---GGA-----CCCAAA-----ATCA---------------------------------------CAGCAATTAGCGCGG-AATT------------AACGACCGATTT--------------------------------------------------------------------CAACATG
droEre2 scaffold_4845:21876673-21876914 - CTGGCTCGA--CACTGG---TATTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTCTTC----------------------GTTGTCAGCTTC--GAGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGCTCAGGTTAGTCGGGTCTGTCTG-----T-TCGTCGGAG-----AA-----CGG-CT-----GTCT-CGAGA--------------------------------------CATTTCTTAGTTCCGATCA---GGA-----C-----CAAAAATCG---------------------------------------CAGCAATCAGCGCGC-AATT------------AACCCCCGATTT--------------------------------------------------------------------CAACATG
droSec2 scaffold_23:375324-375540 - CTGGCTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTCTTC----------------------GTTGTCAGCCCC--GAGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCAGGTTAGTCGGCTCTGTCAG-----T-TCGTCAGAG-----AA-----CGG-GT-----GTCTTCGAGA--------------------------------------AGTTTTTCAGTTCCAATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGAGTT--------------------------------------------------------------------CAACATG
droSim2 2r:20981516-20981732 - CTGGCTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTCCCC----------------------GTTGTCAGCCCC--GAGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCAGGTTAGTCGGCTCTGTCAG-----T-TCGTCAGAG-----AA-----CGG-CT-----GTCTTCGAGA--------------------------------------AGTTTTTCAATTCCAATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGAGTT--------------------------------------------------------------------CAACATG
dm3 chr2R:20501796-20502012 - CTGGCTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTCTTC----------------------GCTGTCAGCCCC--GAGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCAGGTTAGTCGGCTCTGTCTG-----T-TCGTCAGAG-----AA-----CTG-CT-----GTCTTCGAGA--------------------------------------CATTTTTCAGTTCCAATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGAGTT--------------------------------------------------------------------CAACATG
droEug1 scf7180000409464:869843-870068 - CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTCTTG----------------------GTTTTCGGCCTG--GTGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTAGCCAG-TGGTTCAGGTTAGTCGGGTTCGTCGG-----T-TTGCCAGAG-----AA-----CGG-CT-----GTCTTCGAAGG-------------------------------------AGTTTCAA--------------------------AA-----ATCT---------------------------------------AATAAATCAGCGCGA-AGTT------------AATCCCCAATTT--------------------------------------------------------------------GAACATG
droBia1 scf7180000301754:3400253-3400514 + CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTCTTGGGTTTTGGTTTTTGCTATTT-GGTTTCTGGCCGGGTGTGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TGGTTCA-----GTCGGGTTTGTCGG-----T-TCGTCAGGG-----AA-----CGG-CG-----GTCTTCGAGAG-------------------------------------AGTTTCTAAAATTCGTTAG---GCA-----T-----CGCAAGTAG---------------------------------------CCCTAATCAGCGCGG-AGTT------------AAGCCCCAATTT--------------------------------------------------------------------AAACATG
droTak1 scf7180000414175:10517-10741 + CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTCTTC---------------------GGTTTTTGGTCTGGTATGCCTGACCCATGCCCGGATGT-------------CCTATCAATT-----TCGGTGGCCAG-TGGTTCA-----GTCGGCTACCTCGG-----T-TCGTCAGGG-----AA-----AGA---------------------------------------------------------GTTTCT------TGTTTAGAC-AACG-----AAAA-----ATCA---------------------------------------CATAAATCAGCGCGT-AATT------------AATCCCCAATTT--------------------------------------------------------------------AAACATG
droEle1 scf7180000491214:4478761-4478983 + CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAACGATTACAAAGCAAATATGTGTGTTCTTGGTT-TTGGTTT--------G-GGTTTTTGGCCTG--CTGTCTGACCCATGCCCGGATGT-------------CCTATCAATT-----TCGGTGGCCAG-TAGTGCAGGTTAGTCGGGTTCGTCAG-----T-TTGTCGGAG-----AA-----CGG-TT-----GTCTTCAA--------------------------C----------------TTCAA------------------------CAAA-----ATCG---------------------------------------TATCGATCAGCGCGT-AG-------------------------T--------------------------------------------------------------------AAAAATG
droRho1 scf7180000776849:203099-203351 - CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTTTTGGTTTT---------------TGGTTTTTGGCCTG--GTGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCATGTTAGTCGGGTTCGTCAG-----T-TTGTCAGAG-----AA-----CGG-TG-----GTCTCCGAAGGAA------------------------------AGT--GGAATCTA-AATTCGATCA---ATC-----C-----CGAA-AGCA---------------------------------------CATTAATTAGTGCGGTA--T-----AGTAGTTA-------ACTT--------------------------------------------------------------------AACCATG
droFic1 scf7180000453342:356337-356582 - CTGGCTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTCTTG----------------------GTTTTCGGCCTG--CCGTCTGACCCATGCCCGGATGT-------------CCCGTCAAT------TCGGTGGCCAG-TAGCTCAGGTTAGTCGGGTTGGTCGG-----T-TCGATAGAG-----AA-----CGG-TT-----GTCTGAAAGG--------------------------------------GGTTTCTA-AATTTGTTCA---GTA-----C-----CGAAAATCG---------------------------------------CAAAAGTCGGCGCGC-AATTAATCC-GGAAATA-------ATTT--------------------------------------------------------------------AAACATG
droKik1 scf7180000302470:1905844-1906085 + CTGGCTCGG--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTC----------------------------GTTAT-----TG--GTGTCTGACCCACGCCCCGATGA-----------GGGCCATCAAT------GCGGTGGCCAG-TAGCTCGGGTTAGTTGGGTTCGACGG-----T-TCGCCAAAG---------------------------TCGAAGCAAGTTTCACCTTTTTGTTT----TT--------------------------CTTCAGAC---CGAAACTCTGA-----ATCATAATTTAGAGTGGAAAAATCCCCTAACTAAAGTCC----------------------------------------------CT--------------------------------------------------------------------TAACATG
droAna3 scaffold_13266:7092520-7092768 - CTGGCTAGG--C-------------CCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTTTTT----T---------------TCGATTTTATTGTA--GTATCTGTCTCATGTCCGCCCGG-------------GCCGTCGAT------TCGGTAGCCAG-TACTTCATGTTAGTTGGGTTCGTCAG-TCGGT------ACTGTCGAGCAGGAGC------------------------GTTCCTCCA------------TTCCTCATAAATCGAGCGTC------------G---AAA-----T-----CGAAAATCG-------------CAA-------------AAGCCCCGTATATTAATCAGAACAA-A--T-----AGTCATTA----------A--------------------------------------------------------------------AAAAATG
droBip1 scf7180000396759:91024-91270 + CTGGCTAGG--C-------------TCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTTTTT--------------------TCGATTTTATTATG--GTATCTGTCCCGTGTCTGCCTGG-------------GCCGTCGAT------TCGGTAGCCAG-TACTTCTTGTTAGTTTGGTTCGTCAG-TCGGT------ACTGTCGAGCAGGAGT------------------------GTTCCTCCA------------TTCCTCAAAAATCGAGTATC------------G---AAA-----T-----CGAAAACCG-------------CTA-------------AAGCCCC-CACATTAATCAGAACAA-A--T-----AGTCATTA----------A--------------------------------------------------------------------AAATATG
dp5 3:17197983-17198239 + CTGGCTCGGGTTGCTGC---CTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGGGTGTGCGG-CTGGTGT--------GCGGCGGGTGTGCGC--AGGTCTGACCCATGCCCGGTTGG------------GGCCATCAAG------TTGG--GCCAG--------------TCTAGTTAGTCAG-----T-TCGATCGAG-----CT-----CCG-CCGCGTCGCCTTTGAAGCAATTGATACACTTCGATTCGTGTTA-CGC--------------------------A---AA-----------------ATAATAAATA---------------------------------TATAGATAGACAAGA-AATT------------A-T-ATCGAGTG--------------------------------------------------------------------GAATATG
droPer2 scaffold_31:591946-592191 - CTGGCTCGGGTTGCTAC---CTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGGGTGTG--------------------CGGCGGGTGTGCGC--AGGTCTGACCCATGCCCGGTTGG------------GGCCATCAAT------TTGG--GCCAG--------------TCTAGTTAGTCAG-----T-TCGATCGAG-----CT-----CCG-CCGCGTCGCCTTTGAAGCAATTGATACACTTCGATTAGTGTTA-CGC--------------------------A---AA-----------------ATAATAGATA---------------------------------GATAGATAGACAAGA-AATT------------A-T-ATCGAGTG--------------------------------------------------------------------GAATATG
droWil2 scf2_1100000004513:4533937-4534175 + CTTGTAAGC--TACTGAAATCCTTCATG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATCTCTCT---------------------------GTCTGTATAGGT--GAACCTGACCCATGGGGAGGTGTTTGGTCG--GGCAATCATCAAT------TTGTCGGTCAGGTTTTTTTCTTTAGTTTCGATTT-TGATTCACTAACGAGCAAA-----CG-----CCC-ACGCAACGACACGGA---AATACATATATTTCGG-------------------------------------------------------------------------------------------------------------------TTCAA-G---------------------------------------------------------------------TTTTCAGTCTTAAAAAAAA-------AAGAATG
droVir3 scaffold_12875:964656-964892 - CAGGCTAGG--CACTGG---TTTTGTCAACTTTAT-------CAGCTAATGATTACAAAGCAAATATGTGAGC--------------------------------------C--GTGCCTGACCCATGATGA-CTGG----TCGCCGGGGCCCATCAATTTATTTTCGGCGAC-TT-CAGTTCAATTCAGTTCGAACGGACAC-----T-TTGAGTGAA-----A------CGA---------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------CTTGTGCAAAACTATTTTTATAACCGAAATCAAGTCCGATACAAATGG-CGACCGCAACAATAACAGCATCAACCGCT
droMoj3 scaffold_6496:4002971-4003125 - TTTTTTC---------T---TTTTGTCAACCTTAT-------CAGCTAATGATTACAAAGCAAACATGTGAA------------------------------------CCAT--GAGCCTGACCCATGGATGAGTGG----TCG--GTCGCCCATCAAT------TTGGGGGGCTT-CAGTTCAATTCGAGCGGACACAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA-----------------------GAAACAATATTT--------------------------------------------------------------------CTGAATG
droGri2 scaffold_15245:10002642-10002717 + CCGACTTGG--CACTGA---TTTTGTCAACTTTAT-------CAGCTAATGATTACAAAGCAAATATGTGAGC--------------------------------------C--GTGCCTGACCCATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CTGGCTCGA--CACTGG---TTTTGTCG-CCTTATCAGCTATCAGCTAATGATTACAAAGCAAATATGTGCGTTCTTC----------------------GTTGTCAGCTTC--GAGTCTGACCCATGCCCGGATGT-------------CCCGTCAAT------TCGGTGGCCAG-TAGTTCAGGTTAGTCGGGTCTGTCTG-----T-TCGTCAGGG-----AA-----CAGTCT-----GTCTTCGAGA--------------------------------------CATTGTTTAGTTCCGAGCA---GGA-----CCCAAA-----ATCA---------------------------------------CAGCAATTAGCGCGG-AATT------------AACGACCGATTT--------------------------------------------------------------------CAACATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................CTGTCTG-----T-TCGTCAGGG-----AA-----CA....................................................................................................................................................................................................................................................................2114.00401001020000
...................................................................................................................................................................................................................CGTCAGGG-----AA-----CAGTCT-----GTCTT......................................................................................................................................................................................................................................................2112.00200000020000
..........................................................................................................................................................................................................................................................GA--------------------------------------CATTGTTTAGTTCCGAGCA---.....................................................................................................................................................................................2112.00200000020000
......................................................................................................................................................................................CAGGTTAGTCGGGTCTGTCTG-----T-TC.........................................................................................................................................................................................................................................................................................2412.00201000010000
...................................................................................................................................................................................................................CGTCAGGG-----AA-----CAGTCT-----GTCTTCGAGA--------------------------------------C..........................................................................................................................................................................................................2711.00100000010000
..................................................................................................................................................................................AGTTCAGGTTAGTCGGGT.........................................................................................................................................................................................................................................................................................................1811.00101000000000
.........................................................................................................................................................................................................................................................................................................................GA-----CCCAAA-----ATCA---------------------------------------CAGCAATTAGCGCGG-A......................................................................................................2811.00100000010000
..................................................................................................................................................................................................................................................GTCTTCGAGA--------------------------------------CATTGTTTAGTTCCGAGC.........................................................................................................................................................................................2811.00101000000000
...................................................................................................................................................................................................................................................................................................................................AAA-----ATCA---------------------------------------CAGCAATTAGCGCGG-A......................................................................................................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................................................ATCA---------------------------------------CAGCAATTAGCGCGG-AAT....................................................................................................2211.00100100000000
...................................................................................................................................................................................................................................................................................................ATTGTTTAGTTCCGAGCA---GG...................................................................................................................................................................................2011.00100000010000
....................................................................................................................................................................................................................GTCAGGG-----AA-----CAGTCT-----GTCTT......................................................................................................................................................................................................................................................2011.00100000010000
..........................................................................................................................................................................................................................G-----AA-----CAGTCT-----GTCTTCGAGA--------------------------------------CATTGT.....................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................TTGTTTAGTTCCGAGCA---GGA-----.............................................................................................................................................................................2011.00100000010000
............................................................................................................................................................................................AGTCGGGTCTGTCTG-----T-TCGTC......................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................CGTCAGGG-----AA-----CAGTCT-----GTCTTCGA...................................................................................................................................................................................................................................................2411.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AATTAGCGCGG-AATT------------AACGACCG...............................................................................2311.00100000010000
..................................................................................................................................................................................................GTCTGTCTG-----T-TCGTCAGGG-----AA-----CAGTCT-----GT.........................................................................................................................................................................................................................................................2911.00100000010000
................................................................................................................................................................................................................T-TCGTCAGGG-----AA-----CAGTCT-----GT.........................................................................................................................................................................................................................................................2011.00101000000000
.....................................................................................................................................................................................................................TCAGGG-----AA-----CAGTCT-----GTCTTC.....................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................CGGGTCTGTCTG-----T-TCGTCAGGG-----AA-----CA....................................................................................................................................................................................................................................................................2611.00101000000000
....................................................................................................................................................................................................................................................................................................................................AA-----ATCA---------------------------------------CAGCAATTAGCGCGG-.......................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................CAGCAATTAGCGCGG-AATT------------AACGACC................................................................................2611.00101000000000
................................................................................................................................................................................................................T-TCGTCAGGG-----AA-----CAGTCT-----GTCTTCGAGA--------------------------------------...........................................................................................................................................................................................................2811.00100000010000
..........................................................................................................................................................................................................G-----T-TCGTCAGGG-----AA-----CAGTCT-----GTCTTCGAGA--------------------------------------...........................................................................................................................................................................................................2911.00100000010000
...................................................................................................................................................................................................................CGTCAGGG-----AA-----CAGTCT-----GTC........................................................................................................................................................................................................................................................1911.00100000100000
.....................................................................................................................................................................................TCAGGTTAGTCGGGTCTGTCTG-----T-T..........................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................GA-----CCCAAA-----ATCA---------------------------------------CAGCAATTAGCGCGG-AA.....................................................................................................2911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................ATCA---------------------------------------CAGCAATTAGCGCGG-.......................................................................................................1911.00100000010000
..................................................................................................................................................................................................................................................................................................CATTGTTTAGTTCCGAGCA---G....................................................................................................................................................................................2011.00101000000000
...............................................................................................................................................................................G-TAGTTCAGGTTAGTCGGGTCT.......................................................................................................................................................................................................................................................................................................2211.00101000000000
...................................................................................................................................................................................GTTCAGGTTAGTCGGGTCT.......................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................................................................................................................................................................................................CGTCAGGG-----AA-----CAGTCT-----GTCTTCGAGA--------------------------------------...........................................................................................................................................................................................................2611.00100000010000
droEre2
CTGGCTCGA--CACTGG---TATTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTCTTC----------------------GTTGTCAGCTTC--GAGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGCTCAGGTTAGTCGGGTCTGTCTG-----T-TCGTCGGAG-----AA-----CGG-CT-----GTCT-CGAGA--------------------------------------CATTTCTTAGTTCCGATCA---GGA-----C-----CAAAAATCG---------------------------------------CAGCAATCAGCGCGC-AATT------------AACCCCCGATTT--------------------------------------------------------------------CAACATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................CAGCGCGC-AATT------------AACCCCCGATTT--------------------------------------------------------------------C......2512.0022000000
...........................................................................................................................................................................................................................................................A--------------------------------------CATTTCTTAGTTCCGATCA---GGA-----.............................................................................................................................................................................2311.0011000000
..................................................................................................................................................................................AGCTCAGGTTAGTCGGGTC........................................................................................................................................................................................................................................................................................................1911.0010000100
..........................................................................................................................................................................................................................................................GA--------------------------------------CATTTCTTAGTTCCGATCA---GGA-----C-----C......................................................................................................................................................................2611.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................AATCAGCGCGC-AATT------------AACCCC.................................................................................2111.0011000000
...................................................................................................................................................................................................................CGTCGGAG-----AA-----CGG-CT-----GTCT-......................................................................................................................................................................................................................................................1911.0011000000
................................................................................................................................................................................................................................................................................................................GATCA---GGA-----C-----CAAAAATCG---------------------------------------C......................................................................................................................1911.0011000000
....................................................................................................................................................................................................CTGTCTG-----T-TCGTCGGAG-----AA-----C.....................................................................................................................................................................................................................................................................2011.0011000000
.........................................................................................................................................................................................................................................................................................................................................AAATCG---------------------------------------CAGCAATCAGCGC..........................................................................................................1911.0011000000
...................................................................................................................................................................................................................................................................................................ATTTCTTAGTTCCGATCA---GGA-----C-----CAA....................................................................................................................................................................2511.0011000000
.......................................................................................................................................................................................................................GGAG-----AA-----CGG-CT-----GTCT-CGAGA--------------------------------------...........................................................................................................................................................................................................2011.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCGC-AATT------------AACCCCCGATTT--------------------------------------------------------------------C......2111.0011000000
...................................................................................................................................................................................................................................................................................................ATTTCTTAGTTCCGATCA---G....................................................................................................................................................................................1911.0011000000
.................................................................................................................................................................................................................................................................................................................ATCA---GGA-----C-----CAAAAATCG---------------------------------------CAGC...................................................................................................................2111.0010000100
......................................................................................................................................................................................................................................................................................................................................CAAAAATCG---------------------------------------CAGCAATCAGCGCGC-AATT------------.......................................................................................2811.0010100000
..........................................................................................................................................................................................................................G-----AA-----CGG-CT-----GTCT-CGAGA--------------------------------------CAT........................................................................................................................................................................................................2011.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................AATCAGCGCGC-AATT------------AACCCCCG...............................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................AATCAGCGCGC-AATT------------AACCCCCGAT.............................................................................2511.0011000000
........................................................................................................................................................................................GGTTAGTCGGGTCTGTCTG-----T-T..........................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................................................................................CGTCGGAG-----AA-----CGG-CT-----GTCT-CG....................................................................................................................................................................................................................................................2111.0011000000
..........................................................................................................................................................................................................................................................................................................................................AATCG---------------------------------------CAGCAATCAGCGCGC-AAT....................................................................................................2311.0011000000
droSec2
CTGGCTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTCTTC----------------------GTTGTCAGCCCC--GAGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCAGGTTAGTCGGCTCTGTCAG-----T-TCGTCAGAG-----AA-----CGG-GT-----GTCTTCGAGA--------------------------------------AGTTTTTCAGTTCCAATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGAGTT--------------------------------------------------------------------CAACATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................GTCAG-----T-TCGTCAGAG-----AA-----CGG-GT-----...........................................................................................................................................................................................................................................................2214.0040040
........................................................................................................................................................................................................CAG-----T-TCGTCAGAG-----AA-----CGG-GT-----GT.........................................................................................................................................................................................................................................................2213.0030030
...................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACACCCGAGTT--------------------------------------------------------------------CAAC...1912.0020020
......................................................................................................................................................................................................GTCAG-----T-TCGTCAGAG-----AA-----CGG-..................................................................................................................................................................................................................................................................2012.0020020
.....................................................................................................................................................................................TCAGGTTAGTCGGCTCTGTCAG-----T-TCGT.......................................................................................................................................................................................................................................................................................2711.0010010
..................................................................................................................................................................................................CTCTGTCAG-----T-TCGTCAGAG-----AA-----CGG-GT-----...........................................................................................................................................................................................................................................................2611.0010010
........................................................................................................................................................................................GGTTAGTCGGCTCTGTCAG-----T-TCGTCA.....................................................................................................................................................................................................................................................................................2611.0010010
....................................................................................................................................................................................................CTGTCAG-----T-TCGTCAGAG-----AA-----CGG-GT-----...........................................................................................................................................................................................................................................................2411.0010010
...................................................................................................................................................................................GTTCAGGTTAGTCGGCTCTGTCAG-----T-TC.........................................................................................................................................................................................................................................................................................2711.0010010
...................................................................................................................................................................................................................................................................................................GTTTTTCAGTTCCAATCA-------------------------------------------------------------------------------------------GG...........................................................................................2011.0010010
.....................................................................................................................................................................................TCAGGTTAGTCGGCTCTGTCAG-----T-TC.........................................................................................................................................................................................................................................................................................2511.0010010
.................................................................................................................................................................................................................................................................................................................ATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGAGTT--------------------------------------------------------------------.......2211.0010010
...........................................................................................................................................................................................................................................GT-----GTCTTCGAGA--------------------------------------AGTTTTTCAGTT...............................................................................................................................................................................................2411.0010010
.....................................................................................................................................................................................................TGTCAG-----T-TCGTCAGAG-----AA-----CGG-GT-----...........................................................................................................................................................................................................................................................2311.0010010
.............................................................................................................................................................................................................................................................................................................TCCAATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGA..............................................................................2311.0011000
......................................................................................................................................................................................................GTCAG-----T-TCGTCAGAG-----AA-----CGG-GT-----GT.........................................................................................................................................................................................................................................................2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................AATTAACACCCGAGTT--------------------------------------------------------------------CAACAT.2211.0010010
.........................................................................................................................................................................................................................................................AGA--------------------------------------AGTTTTTCAGTTCCAATCA-------------------------------------------------------------------------------------------GG...........................................................................................2411.0010010
...................................................................................................................................................................................GTTCAGGTTAGTCGGCTCT.......................................................................................................................................................................................................................................................................................................1911.0010010
................................................................................................................................................................................................................................................................................................................AATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGAGTT--------------------------------------------------------------------.......2311.0011000
................................................................................................................................................................................................................T-TCGTCAGAG-----AA-----CGG-GT-----GTCT.......................................................................................................................................................................................................................................................2111.0010100
..........................................................................................................................................................................................................G-----T-TCGTCAGAG-----AA-----CGG-GT-----...........................................................................................................................................................................................................................................................1811.0010010
........................................................................................................................................................................................................CAG-----T-TCGTCAGAG-----AA-----CGG-GT-----...........................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................................GAGA--------------------------------------AGTTTTTCAGTTCCAATCA-------------------------------------------------------------------------------------------GGA..........................................................................................2611.0010010
..................................................................................................................................................................................................................................................................................................AGTTTTTCAGTTCCAATCA-------------------------------------------------------------------------------------------GG...........................................................................................2111.0011000
droSim2
CTGGCTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTCCCC----------------------GTTGTCAGCCCC--GAGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCAGGTTAGTCGGCTCTGTCAG-----T-TCGTCAGAG-----AA-----CGG-CT-----GTCTTCGAGA--------------------------------------AGTTTTTCAATTCCAATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGAGTT--------------------------------------------------------------------CAACATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................AGTTCAGGTTAGTCGGCTCT.......................................................................................................................................................................................................................................................................................................2012.00201100000000000000
..................................................................................................................................................................................AGTTCAGGTTAGTCGGCT.........................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......................................................................................................................................GT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCA.....................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
................................................................................................................................................................................................GGCTCTGTCAG-----T-TCGTCAGA...................................................................................................................................................................................................................................................................................2011.00100100000000000000
...................................................................................................................................................................................................................................................................................................GTTTTTCAATTCCAATCA-------------------------------------------------------------------------------------------.............................................................................................1811.00100001000000000000
......................................................................................................................................................................................................GTCAG-----T-TCGTCAGAG-----AA-----CGG-C.................................................................................................................................................................................................................................................................2111.00100010000000000000
......................................................................................................................................................................................................GTCAG-----T-TCGTCAGAG-----AA-----CGG-CC-----...........................................................................................................................................................................................................................................................2211.00100100000000000000
....................................................................................................................................................................................................CTGTCAG-----T-TCGTCAGAG-----AA-----CGG-C.................................................................................................................................................................................................................................................................2311.00100100000000000000
dm3
CTGGCTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTCTTC----------------------GCTGTCAGCCCC--GAGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCAGGTTAGTCGGCTCTGTCTG-----T-TCGTCAGAG-----AA-----CTG-CT-----GTCTTCGAGA--------------------------------------CATTTTTCAGTTCCAATCA-------------------------------------------------------------------------------------------GGAATTAACACCCGAGTT--------------------------------------------------------------------CAACATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................TCAGGTTAGTCGGCTCTGTCT...................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AG-----AA-----CTG-CT-----GTCTTCGAG..................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................G-TAGTTCAGGTTAGTCGGCTCTGTC....................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AATTAACACCCGAGTT--------------------------------------------------------------------CAACAT.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................GTTAGTCGGCTCTGTCTG-----T-TCGT.......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CCC--GAGTCTGACCCATGCCCG.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................GAG-----AA-----CTG-CT-----GTCTTCGA...................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTCTTG----------------------GTTTTCGGCCTG--GTGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTAGCCAG-TGGTTCAGGTTAGTCGGGTTCGTCGG-----T-TTGCCAGAG-----AA-----CGG-CT-----GTCTTCGAAGG-------------------------------------AGTTTCAA--------------------------AA-----ATCT---------------------------------------AATAAATCAGCGCGA-AGTT------------AATCCCCAATTT--------------------------------------------------------------------GAACATGSizeHit CountTotal NormTotal
No Reads
droBia1
CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTCTTGGGTTTTGGTTTTTGCTATTT-GGTTTCTGGCCGGGTGTGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TGGTTCA-----GTCGGGTTTGTCGG-----T-TCGTCAGGG-----AA-----CGG-CG-----GTCTTCGAGAG-------------------------------------AGTTTCTAAAATTCGTTAG---GCA-----T-----CGCAAGTAG---------------------------------------CCCTAATCAGCGCGG-AGTT------------AAGCCCCAATTT--------------------------------------------------------------------AAACATGSizeHit CountTotal NormTotal
No Reads
droTak1
CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTCTTC---------------------GGTTTTTGGTCTGGTATGCCTGACCCATGCCCGGATGT-------------CCTATCAATT-----TCGGTGGCCAG-TGGTTCA-----GTCGGCTACCTCGG-----T-TCGTCAGGG-----AA-----AGA---------------------------------------------------------GTTTCT------TGTTTAGAC-AACG-----AAAA-----ATCA---------------------------------------CATAAATCAGCGCGT-AATT------------AATCCCCAATTT--------------------------------------------------------------------AAACATGSizeHit CountTotal NormTotal
No Reads
droEle1
CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAACGATTACAAAGCAAATATGTGTGTTCTTGGTT-TTGGTTT--------G-GGTTTTTGGCCTG--CTGTCTGACCCATGCCCGGATGT-------------CCTATCAATT-----TCGGTGGCCAG-TAGTGCAGGTTAGTCGGGTTCGTCAG-----T-TTGTCGGAG-----AA-----CGG-TT-----GTCTTCAA--------------------------C----------------TTCAA------------------------CAAA-----ATCG---------------------------------------TATCGATCAGCGCGT-AG-------------------------T--------------------------------------------------------------------AAAAATGSizeHit CountTotal NormTotal
No Reads
droRho1
CTGGCTCGA--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTTTTGGTTTT---------------TGGTTTTTGGCCTG--GTGTCTGACCCATGCCCGGATGT-------------CCTATCAAT------TCGGTGGCCAG-TAGTTCATGTTAGTCGGGTTCGTCAG-----T-TTGTCAGAG-----AA-----CGG-TG-----GTCTCCGAAGGAA------------------------------AGT--GGAATCTA-AATTCGATCA---ATC-----C-----CGAA-AGCA---------------------------------------CATTAATTAGTGCGGTA--T-----AGTAGTTA-------ACTT--------------------------------------------------------------------AACCATGSizeHit CountTotal NormTotal
No Reads
droFic1
CTGGCTCGA--CACTGG---TTTTGTCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTCTTG----------------------GTTTTCGGCCTG--CCGTCTGACCCATGCCCGGATGT-------------CCCGTCAAT------TCGGTGGCCAG-TAGCTCAGGTTAGTCGGGTTGGTCGG-----T-TCGATAGAG-----AA-----CGG-TT-----GTCTGAAAGG--------------------------------------GGTTTCTA-AATTTGTTCA---GTA-----C-----CGAAAATCG---------------------------------------CAAAAGTCGGCGCGC-AATTAATCC-GGAAATA-------ATTT--------------------------------------------------------------------AAACATGSizeHit CountTotal NormTotal
No Reads
droKik1
CTGGCTCGG--CACTGG---TTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTC----------------------------GTTAT-----TG--GTGTCTGACCCACGCCCCGATGA-----------GGGCCATCAAT------GCGGTGGCCAG-TAGCTCGGGTTAGTTGGGTTCGACGG-----T-TCGCCAAAG---------------------------TCGAAGCAAGTTTCACCTTTTTGTTT----TT--------------------------CTTCAGAC---CGAAACTCTGA-----ATCATAATTTAGAGTGGAAAAATCCCCTAACTAAAGTCC----------------------------------------------CT--------------------------------------------------------------------TAACATGSizeHit CountTotal NormTotal
No Reads
droAna3
CTGGCTAGG--C-------------CCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGTTTTTT----T---------------TCGATTTTATTGTA--GTATCTGTCTCATGTCCGCCCGG-------------GCCGTCGAT------TCGGTAGCCAG-TACTTCATGTTAGTTGGGTTCGTCAG-TCGGT------ACTGTCGAGCAGGAGC------------------------GTTCCTCCA------------TTCCTCATAAATCGAGCGTC------------G---AAA-----T-----CGAAAATCG-------------CAA-------------AAGCCCCGTATATTAATCAGAACAA-A--T-----AGTCATTA----------A--------------------------------------------------------------------AAAAATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................GTCAG-TCGGT------ACTGTCGAGCAGGAGC------------------------..............................................................................................................................................................................................................................................2611.001000010
...................................................................................................................................................................................................................................................................................................................................................................................GTATATTAATCAGAACAA-A--T-----A.............................................................................................2111.001100000
.........................................................................................................................................................................................................AG-TCGGT------ACTGTCGAGCAGG.........................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................................................ATCGAGCGTC------------G---AAA-----T-----CGAAAATCG-------------C................................................................................................................................................2511.001000010
.............................................................................................................................................................................................GTTGGGTTCGTCAG-TCGGT------......................................................................................................................................................................................................................................................................................1911.001000010
......................................................................................................................................................................................................................................................................CA------------TTCCTCATAAATCGAGCGTC------------G---AAA-----T-----C......................................................................................................................................................................2811.001010000
........................................................................................................................GTCTCATGTCCGCCCGG-------------GCCGTC.................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................ATATTAATCAGAACAA-A--T-----AGTC..........................................................................................2211.001010000
.....................................................................................................................................................................................................................................GC------------------------GTTCCTCCA------------TTCCTCATAAATCGAGC........................................................................................................................................................................................................2811.001010000
......................................................................................................................................................................................CATGTTAGTTGGGTTCGTCA...................................................................................................................................................................................................................................................................................................2011.001000010
.............................................................................................................................................................................................................................................................................................................................................CG-------------CAA-------------AAGCCCCGTATATTAATCAG.............................................................................................................2511.001100000
...................................................................................................................................................................................CTTCATGTTAGTTGGGTTCGT.....................................................................................................................................................................................................................................................................................................2111.001001000
.......................................................................................................................................................................................................................................................................A------------TTCCTCATAAATCGAGCGTC------------.........................................................................................................................................................................................2111.001010000
droBip1
CTGGCTAGG--C-------------TCG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGTGTTTTTT--------------------TCGATTTTATTATG--GTATCTGTCCCGTGTCTGCCTGG-------------GCCGTCGAT------TCGGTAGCCAG-TACTTCTTGTTAGTTTGGTTCGTCAG-TCGGT------ACTGTCGAGCAGGAGT------------------------GTTCCTCCA------------TTCCTCAAAAATCGAGTATC------------G---AAA-----T-----CGAAAACCG-------------CTA-------------AAGCCCC-CACATTAATCAGAACAA-A--T-----AGTCATTA----------A--------------------------------------------------------------------AAATATGSizeHit CountTotal NormTotal
No Reads
dp5
CTGGCTCGGGTTGCTGC---CTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGGGTGTGCGG-CTGGTGT--------GCGGCGGGTGTGCGC--AGGTCTGACCCATGCCCGGTTGG------------GGCCATCAAG------TTGG--GCCAG--------------TCTAGTTAGTCAG-----T-TCGATCGAG-----CT-----CCG-CCGCGTCGCCTTTGAAGCAATTGATACACTTCGATTCGTGTTA-CGC--------------------------A---AA-----------------ATAATAAATA---------------------------------TATAGATAGACAAGA-AATT------------A-T-ATCGAGTG--------------------------------------------------------------------GAATATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................CAG-----T-TCGATCGAG-----CT-----CCG-CCGC..............................................................................................................................................................................................................................................................2211.0010000001000
.......................................................................................................................................................................................................................................CCG-CCGCGTCGCCTTTGA...................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................................TAGTTAGTCAG-----T-TCGATCGAG-----C............................................................................................................................................................................................................................................................................2211.0010100000000
..........................................................................................................................................................................................................G-----T-TCGATCGAG-----CT-----CCG-CCGC..............................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................AATTGATACACTTCGATTCGTGC.........................................................................................................................................................................................................................2311.0010010000000
..........................................................................................................................................................................................................G-----T-TCGATCGAG-----CT-----CCG-CCGCGTC...........................................................................................................................................................................................................................................................2311.0010100000000
..........................................................................................................................................................................................................G-----T-TCGATCGAG-----CT-----CCG-CCGCGTCGCC........................................................................................................................................................................................................................................................2611.0010000001000
...................................................................................................................................................................................................................CGATCGAG-----CT-----CCG-CCGCGT............................................................................................................................................................................................................................................................1911.0010100000000
droPer2
CTGGCTCGGGTTGCTAC---CTTTGTCA-CCTTAT-------CAGCTAATGATTACAAAGCAAATATGTGCGGGTGTG--------------------CGGCGGGTGTGCGC--AGGTCTGACCCATGCCCGGTTGG------------GGCCATCAAT------TTGG--GCCAG--------------TCTAGTTAGTCAG-----T-TCGATCGAG-----CT-----CCG-CCGCGTCGCCTTTGAAGCAATTGATACACTTCGATTAGTGTTA-CGC--------------------------A---AA-----------------ATAATAGATA---------------------------------GATAGATAGACAAGA-AATT------------A-T-ATCGAGTG--------------------------------------------------------------------GAATATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................ATAGATA---------------------------------GATAGATAGACA...........................................................................................................19140.071010000
droWil2
CTTGTAAGC--TACTGAAATCCTTCATG-CCTTAT-------CAGCTAATGATTACAAAGCAAATATCTCTCT---------------------------GTCTGTATAGGT--GAACCTGACCCATGGGGAGGTGTTTGGTCG--GGCAATCATCAAT------TTGTCGGTCAGGTTTTTTTCTTTAGTTTCGATTT-TGATTCACTAACGAGCAAA-----CG-----CCC-ACGCAACGACACGGA---AATACATATATTTCGG-------------------------------------------------------------------------------------------------------------------TTCAA-G---------------------------------------------------------------------TTTTCAGTCTTAAAAAAAA-------AAGAATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................CAAA-----CG-----CCC-ACGCAACGACACGGA---A...............................................................................................................................................................................................................................................2512.00201010
...............................................................................................................................................................................................................CTAACGAGCAAA-----CG-----CCC-AC................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................................................GACACGGA---AATACATATAT.....................................................................................................................................................................................................................................1911.00100010
............................................................................................................................................................................................................................................CGCAACGACACGGA---AATACATATAT.....................................................................................................................................................................................................................................2511.00101000
droVir3
CAGGCTAGG--CACTGG---TTTTGTCAACTTTAT-------CAGCTAATGATTACAAAGCAAATATGTGAGC--------------------------------------C--GTGCCTGACCCATGATGA-CTGG----TCGCCGGGGCCCATCAATTTATTTTCGGCGAC-TT-CAGTTCAATTCAGTTCGAACGGACAC-----T-TTGAGTGAA-----A------CGA---------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------CTTGTGCAAAACTATTTTTATAACCGAAATCAAGTCCGATACAAATGG-CGACCGCAACAATAACAGCATCAACCGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................AC-----T-TTGAGTGAA-----A------CGA---------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------CT............................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGG-CGACCGCAACAATAACAGC..........2511.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGTCCGATACAAATGG-C............................2211.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GAA-----A------CGA---------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------CTTGTGCAAAACTATTTTTATAACC.....................................................3411.001000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................AC-----T-TTGAGTGAA-----A------CGA---------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------C.............................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.........................................................AAGCAAATATGTGAGC--------------------------------------C--GTGCCTGAC..................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................GAA-----A------CGA---------------------------------------------------------GA--------------------------------------------------------------------------------------------------------------------------CTTGTGCAAAACTAT...............................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCAAGTCCGATACAAATGG-CGA..........................2611.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
TTTTTTC---------T---TTTTGTCAACCTTAT-------CAGCTAATGATTACAAAGCAAACATGTGAA------------------------------------CCAT--GAGCCTGACCCATGGATGAGTGG----TCG--GTCGCCCATCAAT------TTGGGGGGCTT-CAGTTCAATTCGAGCGGACACAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA-----------------------GAAACAATATTT--------------------------------------------------------------------CTGAATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................CGAGCGGACACAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA-----------------------GAAACAAT...............................................................................2711.001100000
.......................................................................................................................................................................................AATTCGAGCGGACACAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT...............................................................................................................2211.001100000
............................................................................................................................................................................................GAGCGGACACAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA-----------------------GA.....................................................................................2011.001000001
droGri2
CCGACTTGG--CACTGA---TTTTGTCAACTTTAT-------CAGCTAATGATTACAAAGCAAATATGTGAGC--------------------------------------C--GTGCCTGACCCATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:55 PM