dya_61

TCGGAATCAACCAAGTGCGGACAGCTCAGAGTTCACCCCAAGGTATGGCCTAGATAACACGGGTATCACATCTTTATGCATTCGATATCTGGTGAGATATTCACGTTGTCTAAACCATGTTTTGTAAGGAAATGCACTCTGCTCATCAGTTAAACTACTAAGATT *********************************((.((((((((((..((((((((..(((((((.((((..(((.......)))...)))).)))))))..))))))))..))))))))))...))**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V120 male body	V058 head	M043 female body	M026 head	V052 head	M056 embryo	SRR1275484 Male prepupae	V046 embryo
............................................................................................TGAGATATTCACGTTGTCTAAA...................................................	22	0	1	50.00	50	44	1	4	1	0	0	0	0
............................................................................................TGAGATATTCACGTTGTCT......................................................	19	0	1	24.00	24	15	6	1	0	2	0	0	0
............................................................................................TGAGATATTCACGTTGTCTA.....................................................	20	0	1	17.00	17	16	0	1	0	0	0	0	0
............................................................................................TGAGATATTCACGTTGTCTAA....................................................	21	0	1	16.00	16	15	1	0	0	0	0	0	0
..................................................TAGATAACACGGGTATCACAT..............................................................................................	21	0	1	5.00	5	3	0	1	0	0	0	1	0
..................................................TAGATAACACGGGTATCACATC.............................................................................................	22	0	1	5.00	5	1	0	2	1	0	1	0	0
.................................................CTAGATAACACGGGTATCACAT..............................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0
..................................................TAGATAACACGGGTATCACA...............................................................................................	20	0	1	2.00	2	1	0	0	0	1	0	0	0
.................................................CTAGATAACACGGGTATCACA...............................................................................................	21	0	1	2.00	2	1	1	0	0	0	0	0	0
............................................................................................TGAGATATTCAGGTTGTCTA.....................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................TGAGATATTCACGTTGTTGA.....................................................	20	2	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................TGAGATATTCACGTTCTCTA.....................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................TGAGATATTCACGTTGTCTAAAC..................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0
............................................................................................TGAGATATTCACATTGTCTAAA...................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................TGAGATATTCACGTTGTCTAT....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................TGAGATATTCACGTTATCTAAA...................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................TGAGATATTCACGTTGTCTAC....................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................ACAGATATTCACGTTGTCT......................................................	19	2	1	1.00	1	0	0	0	0	0	0	0	1
............................................................................................TGAGATATTCACGTTGTTGAAG...................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0
.............................................................................GCATTAGCTAGCTGGTGAGAT...................................................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0
.............................................................................................TGAATATTCACGTTGTCTAAA...................................................	21	3	5	0.20	1	1	0	0	0	0	0	0	0
.....................................................................................................................................TCAGTCTGCGCATCAGTTA.............	19	3	20	0.05	1	0	0	1	0	0	0	0	0

AGCCTTAGTTGGTTCACGCCTGTCGAGTCTCAAGTGGGGTTCCATACCGGATCTATTGTGCCCATAGTGTAGAAATACGTAAGCTATAGACCACTCTATAAGTGCAACAGATTTGGTACAAAACATTCCTTTACGTGAGACGAGTAGTCAATTTGATGATTCTAA **********************************((.((((((((((..((((((((..(((((((.((((..(((.......)))...)))).)))))))..))))))))..))))))))))...))*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528802 follicle cells	M043 female body
............................................................................................................................................CGGGTAGTCAATTTG..........	15	1	8	1.00	8	8	0
....................................................................................................AGTGCTGCAGATTTGG.................................................	16	2	20	0.40	8	8	0
................................AGGGGGGTTCCATACTAG...................................................................................................................	18	3	20	0.05	1	0	1

Species	Coordinate	ID	Type	Alignment
droYak3	X:11885609-11885773 -	dya_61	confident	TCGGAATCAACC---AAG--TGCG-------GACAG-------C------------------TCA-----GAGTTCACCCCAAGGTATGGCCTAGATAACACGGGTATC-AC--ATCTTT---------AT--GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTAA--GGAAATGCA-C----TCTGCTCATCAGTTAAACTACTAA--GATT
droEre2	scaffold_4690:9689036-9689174 +			TCGGAGTCAACAAAC-TCTTGTCAAACAAACG--AG-------C--------------------A-----GAATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATC-AC--ATCTTT---------AT--GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAA--GAAA-----------------------------------------
droSec2	scaffold_8:1735350-1735510 +	dse_82	confident	GGAATACC-------AAC--TCCG-------GAGTG-------C------------------CGA-----AAATTCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATCTTC---------A---GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTT--GAAA--ACTAC----TCAGATCATATCACATACCAACAAGAAACT
droSim2	x:18342648-18342790 +	dsi-mir-977	Known_mirbase	GGAATACC-------AAC--TCCG-------GAGTG-------C------------------CGA-----AAATGCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATTTTC---------A---GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTTTGAAA--ACTAC----TCAGA------------------T--CATA
dm3	chrX:19453056-19453172 +	dme-mir-977	Known_mirbase	GAATCA---ACA------------------------------------------------------------------AACAAGGTATGCTTTAGATAACTCGAATATC-AC--ATCTTC---------A---GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTAC--GAAACTACAAC----TA---------------------A--GATT
droEug1	scf7180000409230:879500-879635 -			TGGAAATCTACA---G------------------------------------------------------GCCACCAACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGC--ATTT-G---------C---ATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAATTCAAGCCTTGGAC--CGAACTTCGATTTCCTGATA------------------T--GATT
droBia1	scf7180000302069:1150869-1150971 -			CCAGACCTACCC-----------------------------------------------------------AATTCACACCAAGGCCTGGCCTCGATCACGCGGGTATC-GC--ATCT---------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGCCTTG--------------------------------------------------
droTak1	scf7180000415169:844679-844803 -			TGGGTATCGT-------ATTGTCTAATTATTGAATC-------T------------------TGC-----TAGTTAACCCCAAGGTCTGGCCTCGATCACGCGGATATC-GC--ATCT---------------GCAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGCCTTG--------------------------------------------------
droEle1	scf7180000490751:1118895-1119001 +			CGTGATCCATCC-----------------------------------------------------------ATTCCCCTCCAAGGTATGGACTCGATCACGCGAGTATC-GC--ACCTTC---------CT--GCAATCGATAATCGGTGAGATA-TTCACGTCGTCGAATCCATGTCTTG--------------------------------------------------
droRho1	scf7180000761121:189948-190064 -			CCATCC---ACT--------GCCA--------GC------------------------------ATCATCCATTCCACACCAAGGTCTGGCCTCGATCACGCGAGTATC-GC--ACCTTC---------CT--GCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTGCCTTG--------------------------------------------------
droFic1	scf7180000454073:1734020-1734147 +			CTAAGT--------------GCCT-------AATTC-------C------------------CGC-----AAGTCCAATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCACCTTT---------CCGCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTGTCTTGGAA--A-------------------------------------G--GAGT
droKik1	scf7180000302517:1183832-1183945 +			TGGGAGTCGAGG---------------------CTC-------T------------------AGA-----TGCAAACCTCCATGGCACGGTCTGGATTACGAGAATATC-GC--ACCTTT---------GA-CGCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTGTCT----------------------------------------------------
droAna3	scaffold_13417:2467459-2467565 -	dan_36	confident	AGCGAGGCACAC-----------------------------------------------------------GCGTACCGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GC--ATCTTA---------GT--TACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCG--------------------------------------------------
droBip1	scf7180000395874:39824-39924 -			CCAAAC-----------------------------------------------------------------GCATACCGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GC--ATCTTA---------GT--TACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTGCCTCG--------------------------------------------------
droWil2	scf2_1100000004909:7956922-7957037 +	dwi_60	confident	CCGTGGACGATC---AAC----------------------------------------------A-----AAATTCA------TATACAATTTCAATAACGTAGATATC-GC--ATCGTTTTTTTTTACC---ATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTGAAGGA------------------------------------------------AT
droVir3	scaffold_13042:906586-906715 -	dvi-mir-977	Known_mirbase	CGGAAACA-------GGA--ACCG-------GAACAGAAACAGGAAAAAGAAATTGTGTTCCCC----------CTGGCC--CAGCCCAGTTGCGATTGCGCGGACATC-TC--ATCGTA---------TA-AACATTCGATAACCAACGAGATA-TTCACGTTATCGAGAC-----------------------------------------------------------
droMoj3	scaffold_6328:2900856-2900973 -	dmo_55	confident	ATGAGTTAAACG---AAA--TG-A-------ACCAG-------T----------T-------CGT-----TGTTCTGGCC--CAGCCCGGTTCCGATTGCGCGGACATC-TC--ATCGTC---------TG-ACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG-------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

TCGGAATCAACC---AAG--TGCG-------GACAG-------C------------------TCA-----GAGTTCACCCCAAGGTATGGCCTAGATAACACGGGTATC-AC--ATCTTT---------AT--GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTAA--GGAAATGCA-C----TCTGCTCATCAGTTAAACTACTAA--GATT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA............................................................	22	1	50.00	50	1	4	0	0	0	1	44	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCT...............................................................	19	1	24.00	24	0	1	0	0	2	6	15	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTA..............................................................	20	1	17.00	17	0	1	0	0	0	0	16	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAA.............................................................	21	1	16.00	16	0	0	0	0	0	1	15	0	0	0	0
............................................................................................TAGATAACACGGGTATC-AC--AT...................................................................................................................	21	1	5.00	5	0	1	0	0	0	0	3	0	0	1	0
............................................................................................TAGATAACACGGGTATC-AC--ATC..................................................................................................................	22	1	5.00	5	1	2	1	0	0	0	1	0	0	0	0
...........................................................................................CTAGATAACACGGGTATC-AC--AT...................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
............................................................................................TAGATAACACGGGTATC-AC--A....................................................................................................................	20	1	2.00	2	0	0	0	0	1	0	1	0	0	0	0
...........................................................................................CTAGATAACACGGGTATC-AC--A....................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC...........................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAT.............................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAC.............................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TCGGAGTCAACAAAC-TCTTGTCAAACAAACG--AG-------C--------------------A-----GAATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATC-AC--ATCTTT---------AT--GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAA--GAAA-----------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................TAGATAACTCGGGTATC-AC--AT...................................................................................................................	21	1	8.00	8	0	0	2	0	5	1	0
............................................................................................TAGATAACTCGGGTATC-AC--A....................................................................................................................	20	1	7.00	7	0	0	0	0	6	1	0
....................................................................................................................................................TGAGATAATTCACGTTGTCTA..............................................................	21	1	6.00	6	0	0	0	0	5	1	0
....................................................................................................................................................TGAGATAATTCACGTTGTCT...............................................................	20	1	4.00	4	0	0	0	0	2	2	0
.........................................................................TTCAACCCAAGGTATGGCC...........................................................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
....................................................................................................................................................TGAGATAATTCACGTTGTC................................................................	19	1	1.00	1	0	0	0	0	1	0	0
............................................................................................TAGATAACTCGGGTATC-AC--ATCT.................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................TGAGATAATTCACGTTGTCTAAA............................................................	23	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................TGAGATAATTCACGTTGT.................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........................................................................ATTCAACCCAAGGTATGGCC...........................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
............................................................................................TAGATAACTCGGGTATC-AC--ATC..................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0

droSec2

GGAATACC-------AAC--TCCG-------GAGTG-------C------------------CGA-----AAATTCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATCTTC---------A---GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTT--GAAA--ACTAC----TCAGATCATATCACATACCAACAAGAAACT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA............................................................	22	1	107.00	107	3	96	6	2
....................................................................................................................................................TGAGATA-TTCACGTTGTCT...............................................................	19	1	82.00	82	2	15	14	51
....................................................................................................................................................TGAGATA-TTCACGTTGTCTA..............................................................	20	1	37.00	37	0	36	0	1
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAA.............................................................	21	1	33.00	33	1	30	0	2
............................................................................................TAGATAACTCGAATATC-AC--ATC..................................................................................................................	22	1	8.00	8	1	6	0	1
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA...........................................................	23	1	5.00	5	1	3	0	1
............................................................................................TAGATAACTCGAATATC-AC--AT...................................................................................................................	21	1	3.00	3	0	2	1	0
............................................................................................TAGATAACTCGAATATC-AC--A....................................................................................................................	20	1	3.00	3	1	1	0	1
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAT.............................................................	21	1	2.00	2	0	2	0	0
.....................................................................................................................................................GAGATA-TTCACGTTGTCTAAA............................................................	21	1	1.00	1	1	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTGTCTA..............................................................	19	1	1.00	1	1	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTTT.............................................................	21	1	1.00	1	0	1	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT............................................................	22	1	1.00	1	0	1	0	0

droSim2

GGAATACC-------AAC--TCCG-------GAGTG-------C------------------CGA-----AAATGCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATTTTC---------A---GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTTTGAAA--ACTAC----TCAGA------------------T--CATA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAA.............................................................	21	1	2553.00	2553	0	2	0	1	1954	31	1	2	2	2	1	0	0	557	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTA..............................................................	20	1	577.00	577	0	1	0	0	392	8	1	4	2	1	1	0	0	167	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTC................................................................	18	1	295.00	295	0	0	0	0	291	3	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA.............................................................	22	1	275.00	275	0	13	0	0	181	11	2	0	0	3	1	0	0	64	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCT...............................................................	19	1	218.00	218	0	0	0	0	168	4	2	0	0	0	2	0	0	42	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA............................................................	22	1	217.00	217	0	7	0	1	23	0	28	14	18	23	1	0	0	102	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC...........................................................	23	1	183.00	183	0	0	0	0	179	4	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCTA..............................................................	21	1	110.00	110	1	17	0	0	62	2	2	0	0	0	0	0	0	26	0	0	0
............................................................................................TAGATAACTCGAATATC-AC--ATT..................................................................................................................	22	1	54.00	54	0	16	0	0	32	0	0	1	0	1	0	0	0	4	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA............................................................	23	1	40.00	40	0	2	0	0	1	0	7	2	7	1	1	0	0	19	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA...........................................................	23	1	33.00	33	0	0	0	0	0	0	2	3	14	6	0	0	0	8	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCT...............................................................	20	1	32.00	32	0	7	0	0	20	0	0	1	0	0	0	0	0	4	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTC................................................................	19	1	30.00	30	0	0	0	0	29	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................TAGATAACTCGAATATC-AC--AT...................................................................................................................	21	1	28.00	28	0	0	0	0	25	0	0	0	0	0	0	0	0	3	0	0	0
............................................................................................TAGATAACTCGAATATC-AC--A....................................................................................................................	20	1	28.00	28	0	0	0	0	27	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................TAGATAACTCGAATATC-AC--ATTTT................................................................................................................	24	1	24.00	24	0	18	0	0	0	0	0	0	1	1	0	0	0	4	0	0	0
............................................................................................TAGATAACTCGAATATC-AC--ATTT.................................................................................................................	23	1	17.00	17	0	3	0	0	10	1	0	1	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTGTCTAA.............................................................	20	1	16.00	16	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGT.................................................................	18	1	15.00	15	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TAGATAACTCGAATATC-AC--ATTTTC---------......................................................................................................	25	1	13.00	13	0	4	0	0	7	0	1	0	0	0	0	0	0	1	0	0	0
............................................................................................TAGATAACTCGAATATC-AC--.....................................................................................................................	19	1	13.00	13	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAT.............................................................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTGTCTA..............................................................	19	1	6.00	6	0	0	0	1	4	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAC...........................................................	24	1	5.00	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTT..............................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
............................................................................................TAGATAACTCGAATATC-A........................................................................................................................	18	1	4.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCA...............................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAAA..........................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCTT..............................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTGTCTAAAC...........................................................	22	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTGTCT...............................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT............................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................TGCATCCCAAGGTATGGTT...........................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCC...............................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAA...........................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAACC..........................................................	24	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTTT.............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................TTC---------A---GTGTTCGATATCTGA...................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAACA...........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG............................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAG.............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTT...................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................TGGTTTGTTTTTGAAA--ACTAC----TCAGA------------------.......	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTCG...............................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTTGTA................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

dm3

GAATCA---ACA------------------------------------------------------------------AACAAGGTATGCTTTAGATAACTCGAATATC-AC--ATCTTC---------A---GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTAC--GAAACTACAAC----TA---------------------A--GATT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................TGAGATA-TTCACGTTGTCT...............................................................	19	1	58925.00	58925	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	5	0	1	1	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	9	2	2	5	0	2	43	2	4	111	0	0	2	1	0	10	0	0	3	14	5	14	1	15	3	1	0	22	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	8	0	2	0	1	0	5	0	0	0	0	0	0	1	306	2	359	0	0	0	0	175	0	362	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	11	2	1	0	0	0	0	0	0	0	0	3	0	0	2	0	0	0	0	1	0	0	1	5	0	1	0	0	90	5	0	39	4	6	121	24	21	1	5	0	3	1	0	8	135	5	7521	7	1	14	1	1	1	4	7	1	1	0	0	0	0	0	47	2	0	7	3	20	14	14	0	1	16	0	20	2	0	0	0	0	51	0	49	53	2	0	0	0	0	9	1	3099	1	0	1	0	0	0	202	0	17	7	74	3	59	35	10	1	51	45328	13	68	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA............................................................	22	1	19962.00	19962	0	0	0	0	0	7	0	0	2	3	6	53	1	0	0	0	0	0	0	0	0	0	0	2811	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	6	0	14	22	0	1	3	20	5	34	1	3	373	6	4	323	5	0	20	49	0	30	4	2	20	6	17	23	1	321	21	4	8	130	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	4	0	2	1	40	2	2	0	2	0	5	2	0	0	0	0	0	3	522	0	874	0	0	0	0	440	0	828	4	0	0	0	0	0	1	3	0	0	0	0	0	4	0	0	0	7	25	0	0	0	2	0	5	9	3	1	50	2	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	31	0	0	8	0	0	2	0	0	0	0	0	0	2	0	1	19	4	1611	1	1	1	1	2	2	1	8	2	3	1	4	3	3	0	17	3	0	2	0	1	1	3	33	2	69	0	1	0	1	4	0	0	132	0	88	117	0	0	0	5	0	2	6	9387	5	0	0	0	5	1	36	0	16	1	71	1	2	3	0	0	0	958	0	25	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAA.............................................................	21	1	15814.00	15814	0	0	0	0	1	20	0	0	1	1	4	129	6	0	0	0	0	0	0	0	0	0	0	3191	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	49	3	1	8	0	0	17	42	7	148	7	3	1504	10	14	1008	8	3	62	104	31	186	1	0	96	46	102	134	3	746	59	13	17	541	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	2	0	0	1	11	0	2	0	1	0	1	0	0	0	0	0	0	3	530	7	628	0	0	0	0	451	0	544	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	0	0	0	0	0	1	1	0	0	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	26	0	0	6	0	0	1	0	0	0	0	0	2	0	0	3	32	0	1107	1	0	3	0	1	0	0	4	0	0	0	3	0	1	0	8	1	0	1	0	0	0	2	2	6	42	0	1	0	0	0	0	0	72	0	42	64	0	0	0	1	0	2	4	3221	3	1	0	0	0	0	14	0	5	0	43	0	1	1	0	0	0	525	0	6	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTA..............................................................	20	1	8506.00	8506	0	0	0	0	0	2	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	1772	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	1	0	13	6	1	14	1	0	138	3	4	189	0	0	0	6	14	29	1	0	14	17	10	26	1	52	8	1	4	86	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	2	0	1	0	14	0	2	0	1	0	1	0	0	0	0	0	0	2	305	0	312	0	0	0	0	266	0	206	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	10	0	0	6	0	0	2	0	2	0	1	0	0	0	0	0	19	1	1317	2	0	2	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	2	0	23	0	2	0	0	0	0	0	38	0	32	38	0	1	0	0	0	0	0	2720	3	0	0	0	1	0	17	0	4	1	23	0	2	1	0	0	0	659	2	8	0
............................................................................................TAGATAACTCGAATATC-AC--ATC..................................................................................................................	22	1	1778.00	1778	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	102	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	29	0	0	7	0	0	3	2	1	1	0	0	1	1	6	7	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	8	0	2	0	0	0	3	0	0	0	0	1	0	0	217	0	87	0	0	0	0	131	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	2	7	4	17	9	4	2	51	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	4	1	435	1	0	0	0	1	0	1	6	0	0	0	1	0	1	0	6	0	0	2	0	0	0	0	2	0	3	0	0	0	0	0	0	0	6	0	1	3	0	0	0	0	0	0	0	270	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	235	1	6	0
............................................................................................TAGATAACTCGAATATC-AC--AT...................................................................................................................	21	1	658.00	658	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	16	0	0	0	0	0	4	0	0	2	4	4	2	0	9	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	80	1	10	0	0	0	0	43	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	3	1	6	4	0	0	8	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	173	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	61	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	110	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA...........................................................	23	1	463.00	463	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	5	0	0	5	0	0	1	0	0	3	0	0	0	0	0	0	0	7	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	22	0	0	0	0	7	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	4	0	0	1	0	0	0	0	244	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	31	0	2	0
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....................................................................................................................................................TGAGATA-TTCACGTTGTCTAATC...........................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AGATA-TTCACGTTGTCTAA.............................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAG...........................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TAGATAACTCGAATATC-AC--ATT..................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TTC---------A---GTGTTCGAAATCTGATC.................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TA-TTCACGTTGTCTAAATC..........................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTCC.............................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTCTATT............................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

TGGAAATCTACA---G------------------------------------------------------GCCACCAACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGC--ATTT-G---------C---ATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAATTCAAGCCTTGGAC--CGAACTTCGATTTCCTGATA------------------T--GATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCAGACCTACCC-----------------------------------------------------------AATTCACACCAAGGCCTGGCCTCGATCACGCGGGTATC-GC--ATCT---------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGCCTTG--------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGGGTATCGT-------ATTGTCTAATTATTGAATC-------T------------------TGC-----TAGTTAACCCCAAGGTCTGGCCTCGATCACGCGGATATC-GC--ATCT---------------GCAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGCCTTG--------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGTGATCCATCC-----------------------------------------------------------ATTCCCCTCCAAGGTATGGACTCGATCACGCGAGTATC-GC--ACCTTC---------CT--GCAATCGATAATCGGTGAGATA-TTCACGTCGTCGAATCCATGTCTTG--------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCATCC---ACT--------GCCA--------GC------------------------------ATCATCCATTCCACACCAAGGTCTGGCCTCGATCACGCGAGTATC-GC--ACCTTC---------CT--GCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTGCCTTG--------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTAAGT--------------GCCT-------AATTC-------C------------------CGC-----AAGTCCAATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCACCTTT---------CCGCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTGTCTTGGAA--A-------------------------------------G--GAGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGGGAGTCGAGG---------------------CTC-------T------------------AGA-----TGCAAACCTCCATGGCACGGTCTGGATTACGAGAATATC-GC--ACCTTT---------GA-CGCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTGTCT----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCGAGGCACAC-----------------------------------------------------------GCGTACCGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GC--ATCTTA---------GT--TACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCG--------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAA.............................................................	21	1	226.00	226	29	0	0	16	173	8
............................................................................................TCGATCACGAGAACGTC-GC--ATCT.................................................................................................................	23	1	179.00	179	15	2	0	9	144	9
....................................................................................................................................................TGAGATA-TTCACGTCGTCGA..............................................................	20	1	136.00	136	33	0	0	9	91	3
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAAA............................................................	22	1	134.00	134	27	0	0	4	102	1
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAA.............................................................	22	1	49.00	49	2	0	0	3	44	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGA..............................................................	21	1	33.00	33	3	0	0	0	29	1
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAAT............................................................	22	1	32.00	32	3	0	0	1	25	3
............................................................................................TCGATCACGAGAACGTC-GC--AT...................................................................................................................	21	1	30.00	30	3	1	0	5	21	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAA............................................................	23	1	23.00	23	3	0	0	2	16	2
............................................................................................TCGATCACGAGAACGTC-GC--ATC..................................................................................................................	22	1	20.00	20	5	1	0	0	14	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCG...............................................................	19	1	12.00	12	2	0	0	2	8	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAT............................................................	23	1	11.00	11	1	0	0	2	7	1
...................................................................................................................................................ATGAGATA-TTCACGTCGTCG...............................................................	20	1	10.00	10	0	0	0	0	10	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAATT...........................................................	23	1	8.00	8	0	0	0	0	8	0
.....................................................................................................................................................GAGATA-TTCACGTCGTCGAAA............................................................	21	1	6.00	6	6	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAAAT...........................................................	23	1	5.00	5	0	0	0	0	4	1
............................................................................................TCGATCACGAGAACGTC-GC--A....................................................................................................................	20	1	5.00	5	0	0	0	0	5	0
......................................................................................................................................................AGATA-TTCACGTCGTCGAA.............................................................	19	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAT.............................................................	21	1	3.00	3	0	0	0	1	2	0
............................................................................................TCGATCACGAGAACGTC-GC--ATCTTT---------......................................................................................................	25	1	3.00	3	0	0	0	1	1	1
.....................................................................................................................................................GAGATA-TTCACGTCGTCGAA.............................................................	20	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATT...........................................................	24	1	2.00	2	0	0	0	0	2	0
............................................................................................TCGATCACGAGAACGTC-GC--AA...................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
............................................................................................TCGATCACGAGAACGTC-GC--ATCTT................................................................................................................	24	1	2.00	2	0	0	0	0	2	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGATT............................................................	22	1	2.00	2	0	0	0	0	2	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAATTT..........................................................	24	1	2.00	2	0	0	0	1	1	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAC.............................................................	21	1	2.00	2	0	0	0	0	2	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGT..............................................................	20	1	2.00	2	0	0	0	1	1	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAG.............................................................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGT..............................................................	21	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAACT..........................................................	25	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGATT............................................................	23	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATTT..........................................................	25	1	1.00	1	0	0	0	0	1	0
............................................................................................TCGATCACGAGAACGTC-GC--ATCTC................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAAATT..........................................................	24	1	1.00	1	0	0	0	0	1	0
...........................................................................................CTCGATCACGAGAACGTC-GC--ATCT.................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAAT...........................................................	24	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGTTT............................................................	22	2	1.00	2	0	0	0	0	2	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAAG............................................................	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAG.............................................................	22	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................TGAGATA-TTCACGTCGTCGAGTT...........................................................	23	1	1.00	1	0	0	0	0	1	0
............................................................................................TCGATCACGAGAACGTC-GC--T....................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................ATGAGATA-TTCACGTCGTCGAT.............................................................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................GAGATA-TTCACGTCGTCGT..............................................................	19	2	0.50	1	1	0	0	0	0	0

droBip1

CCAAAC-----------------------------------------------------------------GCATACCGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GC--ATCTTA---------GT--TACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTGCCTCG--------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droWil2

CCGTGGACGATC---AAC----------------------------------------------A-----AAATTCA------TATACAATTTCAATAACGTAGATATC-GC--ATCGTTTTTTTTTACC---ATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTGAAGGA------------------------------------------------AT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAAG............................................................	22	1	330.00	330	11	0	286	21	12
....................................................................................................................................................TGAGATA-TTCACGTTGTTGA..............................................................	20	1	264.00	264	1	0	257	1	5
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAA.............................................................	21	1	129.00	129	0	1	121	3	4
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGT...........................................................	23	1	79.00	79	3	0	64	2	10
............................................................................................TCAATAACGTAGATATC-GC--ATC..................................................................................................................	22	1	18.00	18	7	0	9	2	0
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAAA............................................................	22	1	17.00	17	0	0	17	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGA...........................................................	23	1	9.00	9	0	1	7	1	0
............................................................................................TCAATAACGTAGATATC-GC--AT...................................................................................................................	21	1	6.00	6	3	0	3	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTTG...............................................................	19	1	5.00	5	0	0	4	0	1
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAT.............................................................	21	1	5.00	5	0	0	5	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAAT............................................................	22	1	4.00	4	0	0	4	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGTT..........................................................	24	1	3.00	3	0	0	3	0	0
.....................................................................................................................................................GAGATA-TTCACGTTGTTGA..............................................................	19	1	3.00	3	0	0	3	0	0
.....................................................................................................................................................GAGATA-TTCACGTTGTTGAAG............................................................	21	1	2.00	2	0	0	2	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTTGG..............................................................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTTGAAAA...........................................................	23	1	1.00	1	0	0	1	0	0
..............................................................................................AATAACGTAGATATC-GC--ATC..................................................................................................................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................TGAGATA-TTCACGTTGTTGT..............................................................	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................AGAGATGAGATA-TTCACGTTGT.................................................................	22	1	1.00	1	0	0	1	0	0
............................................................................................TCAATAACGTAGATATC-GC--AG...................................................................................................................	21	1	1.00	1	1	0	0	0	0

droVir3

CGGAAACA-------GGA--ACCG-------GAACAGAAACAGGAAAAAGAAATTGTGTTCCCC----------CTGGCC--CAGCCCAGTTGCGATTGCGCGGACATC-TC--ATCGTA---------TA-AACATTCGATAACCAACGAGATA-TTCACGTTATCGAGAC-----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGA............................................................	22	1	17315.00	17315	15	0	29	0	2	464	7	86	0	198	1	0	0	0	3	0	1	1	7	0	451	1	0	0	1	2	9	7	5559	3811	1447	4311	2	271	0	2	0	2	4	541	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	1	0	55	0	7	2	0	0	0	8	1	1	0	0	1	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAG.............................................................	21	1	15065.00	15065	1	0	19	0	8	646	3	65	0	64	0	0	0	0	3	0	0	0	4	0	621	1	0	1	6	3	4	4	3767	3152	1149	3995	3	481	0	0	1	1	0	1031	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	23	0	1	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATC..................................................................................................................	22	1	957.00	957	4	0	7	0	0	22	1	2	0	6	0	0	0	0	0	0	0	0	0	0	54	0	0	0	0	0	0	0	221	208	117	234	0	43	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--AT...................................................................................................................	21	1	582.00	582	0	0	0	0	0	6	1	1	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	0	0	140	130	57	179	0	21	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGT............................................................	22	1	582.00	582	0	0	0	0	0	42	0	12	0	9	0	0	0	0	0	0	0	0	0	0	52	0	0	0	0	0	0	0	107	95	41	137	0	30	0	0	0	0	0	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGA..............................................................	20	1	542.00	542	1	0	1	0	0	23	1	3	0	5	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	127	125	53	126	0	21	1	0	0	0	0	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCG...............................................................	19	1	453.00	453	0	0	2	0	0	41	0	3	0	8	0	0	0	0	0	0	0	0	0	0	38	0	0	0	0	0	1	0	70	76	24	80	0	50	0	0	0	0	0	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTATCGAGA............................................................	21	1	140.00	140	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	37	35	19	34	0	3	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--A....................................................................................................................	20	1	124.00	124	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	33	30	8	31	0	7	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGAT-----------------------------------------------------------	23	1	115.00	115	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	33	20	7	38	0	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTATCGAG.............................................................	20	1	111.00	111	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	29	25	12	22	0	6	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGAA-----------------------------------------------------------	23	1	102.00	102	1	0	1	0	0	5	0	1	0	3	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	24	16	9	25	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	1	1	1	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATCG.................................................................................................................	23	1	100.00	100	1	0	0	0	0	4	0	1	0	7	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	18	19	6	22	0	5	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGC............................................................	22	1	57.00	57	0	0	0	0	0	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	8	4	3	4	0	4	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAC.............................................................	21	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	7	4	4	6	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATCGTA---------......................................................................................................	25	1	32.00	32	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	8	3	6	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATC................................................................	18	1	25.00	25	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	6	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACGAGATA-TTCACGTTATCGAGA............................................................	23	1	18.00	18	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	2	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATT..................................................................................................................	22	1	17.00	17	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	3	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACGAGATA-TTCACGTTATCGAG.............................................................	22	1	17.00	17	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAT.............................................................	21	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	2	0	3	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATCT.................................................................................................................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGAC-----------------------------------------------------------	23	1	12.00	12	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	3	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAA.............................................................	21	1	11.00	11	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	2	3	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCC...............................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGG............................................................	22	1	8.00	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGTC.............................................................	21	1	8.00	8	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GATA-TTCACGTTATCGAGA............................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGAG-----------------------------------------------------------	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGAGTT-----------------------------------------------------------	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AGATA-TTCACGTTATCGAGA............................................................	20	1	4.00	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--.....................................................................................................................	19	1	4.00	4	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................ATA-TTCACGTTATCGAGA............................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGC..............................................................	20	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACGAGATA-TTCACGTTATCG...............................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATCC.................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATCGTC---------......................................................................................................	25	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GATTGCGCGGACATC-TC--ATC..................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GATTGCGCGGACATC-TC--AT...................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TT--C....................................................................................................................	20	1	3.00	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACGAGATA-TTCACGTTATCGA..............................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--C....................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTATCGAGT............................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATTT.................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGACC............................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATCGT................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATCA.................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTATCGA..............................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--ATA..................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGATTGCGCGGACATC-TC--AT...................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TGCGATTGCGCGGACATC-TC--A....................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGCT.............................................................	21	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GATA-TTCACGTTATCGAG.............................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTATCGAT.............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCAG..............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGATC............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TT--.....................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGATTGCGCGGACATC-TC--AA...................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCGATG............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TTGCGATTGCGCGGACATC-TC--.....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CGAGATA-TTCACGTTATCCC..............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTATCGAGAT-----------------------------------------------------------	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................CCC----------CTGGCC--CAGCCCAGTT...........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GAGATA-TTCACGTTATCG...............................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................TTGCGATTGCGCGGACATC-TC--A....................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TGCGATTGCGCGGACATC-TC--ATC..................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AGATA-TTCACGTTATCGAG.............................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TGCGATTGCGCGGACATC-TC--AT...................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATGAGTTAAACG---AAA--TG-A-------ACCAG-------T----------T-------CGT-----TGTTCTGGCC--CAGCCCGGTTCCGATTGCGCGGACATC-TC--ATCGTC---------TG-ACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG-------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................TGAGATA-TTCACGTTATCGAGA............................................................	22	1	473.00	473	61	1	7	16	6	382
............................................................................................CCGATTGCGCGGACATC-TC--ATC..................................................................................................................	22	1	99.00	99	14	0	2	0	2	81
............................................................................................CCGATTGCGCGGACATC-TC--AT...................................................................................................................	21	1	46.00	46	7	0	0	2	1	36
............................................................................................CCGATTGCGCGGACATC-TC--A....................................................................................................................	20	1	34.00	34	4	0	2	0	0	28
....................................................................................................................................................TGAGATA-TTCACGTTATCGAG.............................................................	21	1	22.00	22	7	0	0	0	4	11
....................................................................................................................................................TGAGATA-TTCACGTTATCGAGAA...........................................................	23	1	6.00	6	1	0	0	1	0	4
............................................................................................CCGATTGCGCGGACATC-TC--ATCG.................................................................................................................	23	1	6.00	6	1	0	0	0	0	5
....................................................................................................................................................TGAGATA-TTCACGTTATCGAGT............................................................	22	1	6.00	6	1	0	0	0	0	5
.....................................................................................................................................................GAGATA-TTCACGTTATCGAGA............................................................	21	1	4.00	4	4	0	0	0	0	0
............................................................................................CCGATTGCGCGGACATC-TC--ATT..................................................................................................................	22	1	4.00	4	0	0	0	0	0	4
....................................................................................................................................................TGAGATA-TTCACGTTATCGAGAT...........................................................	23	1	3.00	3	1	0	0	0	0	2
....................................................................................................................................................TGAGATA-TTCACGTTATCGA..............................................................	20	1	3.00	3	0	0	0	0	0	3
...................................................................................................................................................ATGAGATA-TTCACGTTATCGAGA............................................................	23	1	2.00	2	1	0	0	0	0	1
............................................................................................CCGATTGCGCGGACATC-TT--C....................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................ATGAGATA-TTCACGTTATCGAGAT...........................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................TGAGATA-TTCACGTTATCGAGG............................................................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................CCGATTGCGCGGACATC-TC--ATCC.................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................AGATA-TTCACGTTATCGAGA............................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................CCGATTGCGCGGACATC-TC--AG...................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................CCGATTGCGCGGACATC-TC--ATG..................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................TGAGATA-TTCACGTTATCGAGC............................................................	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................ATGAGATA-TTCACGTTATCGAGT............................................................	23	1	1.00	1	0	0	0	0	0	1
............................................................................................CCGATTGCGCGGACATC-TC--ATCT.................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

dya_61

X:11885659-11885723 -

Known Ortholog

Testes-restricted

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.2	-26.2	-26.0