ID:

dya_536

 Coordinate:

2R:10851898-10852048 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.1 -26.1 -25.9

Flybase annnotation

CDS [Dyak\GE13629-cds]; exon [dyak_GLEANR_13822:2]; intron [Dyak\GE13629-in]

Repeatable elements

NameClassFamilyStrand
Polinton-1_DYDNAMaverick-
mature
  1. 2L:6489097-6489121 +
  2. 2L:21636608-21636632 +
  3. 2L:21917098-21917122 +
  4. 2L:22265802-22265826 +
  5. 2L:22267909-22267933 +
  6. X:21763328-21763352 +
  7. 3R:22634468-22634492 +
  8. v2_chrUn_2894:8813-8837 +
  9. v2_chrUn_5717:626-650 +
  10. v2_chr2h_random_005:58616-58640 +
  11. v2_chrUn_6904:9248-9272 +
  12. v2_chr2L_random_019:13494-13518 +
  13. v2_chr2h_random_002:251302-251326 +
  14. v2_chr2h_random_021:71-95 +
  15. v2_chr2h_random_021:164919-164943 +
  16. v2_chrUn_007:16433-16457 +
  17. v2_chrUn_159:5815-5839 +
  18. v2_chrUn_299:66163-66187 +
  19. v2_chrUn_805:30896-30920 +
  20. v2_chrUn_805:43754-43778 +
  21. dya_536  2R:10852010-10852034 +
  22. 2R:11826631-11826655 +
  23. X:20590129-20590153 +
  24. v2_chrUn_1188:531-555 +
  25. v2_chrUn_3870:21536-21560 +
  26. v2_chrUn_4206:242102-242126 +
  27. v2_chrUn_4541:7369-7393 +
  28. v2_chrUn_3487:756-780 +
  29. v2_chrUn_6274:435-459 +
  30. v2_chrUn_6541:9158-9182 +
  31. v2_chr2h_random_005:75564-75588 +
  32. v2_chrUn_7000:1102-1126 +
  33. chr2h:821432-821456 +
  34. v2_chr2h_random_021:97173-97197 +
  35. v2_chr3R_random_161:5385-5409 +
  36. v2_chr3R_random_271:1657-1681 +
  37. v2_chr3R_random_337:2212-2236 +
  38. v2_chrX_random_049:128032-128056 +
  39. v2_chrX_random_047:22932-22956 +
  40. v2_chrUn_087:24343-24367 +
  41. 3L:20791456-20791480 -
  42. 2L:6493288-6493312 -
  43. 2L:21918138-21918162 -
  44. 2R:10856609-10856633 -
  45. 2R:11831173-11831197 -
  46. X:16582207-16582231 -
  47. X:20591433-20591457 -
  48. 3R:3262775-3262799 -
  49. v2_chrUn_4766:806-830 -
  50. v2_chrUn_6303:240-264 -
  51. v2_chrUn_6756:995-1019 -
  52. v2_chr2L_random_019:47424-47448 -
  53. v2_chr3R_random_162:359-383 -
  54. v2_chrX_random_049:131676-131700 -
  55. v2_chrUn_002:222391-222415 -
  56. v2_chrUn_007:37514-37538 -
  57. v2_chrUn_180:6789-6813 -
  58. v2_chrUn_261:717-741 -
  59. v2_chrUn_647:349-373 -
  60. v2_chrUn_650:2294-2318 -
  61. 2L:22283842-22283866 +
  62. v2_chrX_random_001:19932-19956 +
  63. X:16579885-16579909 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCGGCGGCGGAGATTGTCTGGTTCCAGGGCGAGGTTCCAGTTTCGACAGGTGAGTTCAAGACATATATGTACTACATAACTATATTTTTAAGGTGCTTATAAAAATACGAACTTACAAGGCATTCAAGCTTTAAATTAATATTGAATGTAAGTAGCTGGAATATACGGGAACGACGGTTTTTTAACGGTTTTATGATTATATGATTTTTTATATATACGTATACACGACCCTATAACCAGTTTGTTTGAT
**************************************************((((((((......((((.(((((..................))))).)))).......))))))))...((((((((..((......))..))))))))..((..(((.......)))..))(((.(((....))).)))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M056
embryo
 M043
female body
 GSM1528802
follicle cells		 V046
embryo
 V120
male body		 V058
head
 M026
head
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAACGGC............................................................. 28 1 20 28.70 574 574 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAAC................................................................ 25 0 20 10.75 215 215 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAACG............................................................... 26 0 20 6.15 123 74 48 0 0 0 1 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACCCTATA............... 27 0 20 3.85 77 1 76 0 0 0 0 0
..................................................................................................................................................................TATTCGGGAACGACGGTTTTTTAACGGT............................................................. 28 1 20 2.20 44 44 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAACGGTTT........................................................... 30 0 20 1.85 37 0 0 37 0 0 0 0
...................................................................................................................................................................ATACGGGAACGACGGTTTTTTAACGGT............................................................. 27 0 20 1.30 26 0 26 0 0 0 0 0
..............................................................................................................................................................................................................................TACACGACCCTATAACCAGTTTGTTTGA. 28 0 20 1.15 23 2 21 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAACGGT............................................................. 28 0 20 1.10 22 0 0 0 22 0 0 0
.............................................................................................................................................................TGGAATATACGGGAACGACGGTTTTT.................................................................... 26 0 20 1.05 21 21 0 0 0 0 0 0
..................................................................................................................................................................................................................TATATATACGTATACACGACCCTA................. 24 0 20 1.05 21 0 21 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACCCGACCCTAT................ 26 1 20 1.00 20 0 0 20 0 0 0 0
........................................................................................................................................................................................................................TACGTATACACGACCCTATAACCAGTT........ 27 0 20 1.00 20 0 20 0 0 0 0 0
.............................................................................................................................................................TGGAATATACGGGAACGACGGTTTT..................................................................... 25 0 20 0.95 19 18 0 0 0 1 0 0
..................................................................................................................................................................................................................TATATATACGTATACACGACCCTAT................ 25 0 20 0.90 18 0 18 0 0 0 0 0
..........................................................................................................................................................................AACGACGGTTTTTTAACGGTTTTATGAT..................................................... 28 0 20 0.75 15 0 0 15 0 0 0 0
....................................................................................................................................................................TGCGGGAACGACGGTTTTTTAACGGT............................................................. 26 1 20 0.65 13 13 0 0 0 0 0 0
...................................................................................................................................................................ATACGGGAACGACGGTTTTTTAACGG.............................................................. 26 0 20 0.60 12 1 10 0 0 1 0 0
..............................................................................................................................................................................ACGGTTTTTTAACGGT............................................................. 16 0 20 0.60 12 0 0 12 0 0 0 0
..................................................................................................................................................................TATACGGGAAAGACGGTTTTTTAACGGT............................................................. 28 1 20 0.55 11 11 0 0 0 0 0 0
....................................................................................................................................................................TACGGGAACGACGGTTTTTTAACG............................................................... 24 0 20 0.55 11 7 3 0 0 1 0 0
..................................................................................................................................................................................................................................CGACCCTATAACCAGTTTGTTTGAT 25 0 20 0.55 11 0 0 11 0 0 0 0
..................................................................................................................................................................TATTCGGGAACGACGGTTTTTTAAC................................................................ 25 1 20 0.50 10 10 0 0 0 0 0 0
..................................................................................................................................................................GATACGGGAACGACGGTTTTTTAACGGT............................................................. 28 1 20 0.50 10 9 1 0 0 0 0 0
.........................................................................................................................................................TAGCTGGAATATACGGGAACGAC........................................................................... 23 0 20 0.50 10 10 0 0 0 0 0 0
.............................................................................................................................................................TGGAATATACGGGAACGACGGTTTTTT................................................................... 27 0 20 0.45 9 9 0 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATGCGTATACACGACCCTA................. 25 1 20 0.45 9 0 9 0 0 0 0 0
................................................................................................................................................................................................................TTTATATATACGTATACACGACCCTAT................ 27 0 20 0.40 8 0 0 8 0 0 0 0
.................................................................................................................................................................................................................TTATATATGCGTATACACGACCCTAT................ 26 1 20 0.40 8 0 8 0 0 0 0 0
..................................................................................................................................................................TACACGGGAACGACGGTTTTTTAACGG.............................................................. 27 1 20 0.35 7 7 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAA................................................................. 24 0 20 0.35 7 0 5 0 0 2 0 0
....................................................................................................................................................................TACGGGAACGACGGTTTTTTAACGGTTT........................................................... 28 0 20 0.35 7 0 7 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACCC................... 23 0 20 0.30 6 0 6 0 0 0 0 0
..................................................................................................................................................................................................................TATATATACGTATACACGACCCTATAAC............. 28 0 20 0.30 6 0 6 0 0 0 0 0
.........................................................................................................................................................TAGCTGGAATATACGGGAACGACG.......................................................................... 24 0 20 0.30 6 0 6 0 0 0 0 0
.................................................................................................................................................................................................................TGATATATACGTATACACGACCCTAT................ 26 1 20 0.30 6 6 0 0 0 0 0 0
............................................................................................................................................................................................................................TATACACGACCCTATACCCAGTTTGT..... 26 1 20 0.30 6 0 0 6 0 0 0 0
..........................................................................................................................................................AGCTGGAATATACGGGAACGACGGT........................................................................ 25 0 20 0.30 6 6 0 0 0 0 0 0
........................................................................................................................................................................................................................TACGTATACACGACCCTATAACCAGT......... 26 0 20 0.30 6 6 0 0 0 0 0 0
..................................................................................................................................................................TATTCGGGAACGACGGTTTTTTAACGG.............................................................. 27 1 20 0.25 5 5 0 0 0 0 0 0
.........................................................................................................................................................TAGCTGGAATATACGGGAACGACGGT........................................................................ 26 0 20 0.25 5 0 0 0 4 1 0 0
.........................................................................................................................................................TAGCTGGAATATACGGGAACGACGGTC....................................................................... 27 1 20 0.25 5 5 0 0 0 0 0 0
............................................................................................................................................................................CGACGGTTTTTTACCGGTTTTATGAT..................................................... 26 1 20 0.25 5 0 0 5 0 0 0 0
.................................................................................................................................................................CGATACGGGAACGACGGTTTTTTAACGGC............................................................. 29 3 20 0.25 5 5 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATATACGTATACACGACCCTAT................ 22 0 20 0.20 4 0 4 0 0 0 0 0
........................................................................................................................................................GTAGCTGGAATATACGGGAACGACGG......................................................................... 26 0 20 0.20 4 4 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGTTTTTTTAACGGC............................................................. 28 2 20 0.20 4 4 0 0 0 0 0 0
......................................................................................................................................................AAGTAGCTGGAATATACGGGAACGACGG......................................................................... 28 0 20 0.20 4 4 0 0 0 0 0 0
..................................................................................................................................................................CATACGGGAACGACGGTTTTTTAACGGC............................................................. 28 2 20 0.20 4 4 0 0 0 0 0 0
.............................................................................................................................................AGTGAATGTAAGTATCTGGCA......................................................................................... 21 3 6 0.17 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTCACGGT............................................................. 28 1 20 0.15 3 0 0 3 0 0 0 0
...................................................................................................................................................................................TTTTTAACGGTTTTATGCTTATATGAT............................................. 27 1 20 0.15 3 0 0 3 0 0 0 0
.........................................................................................................................................................................................................................ACGTATACACGACCCTATAACCAGTT........ 26 0 20 0.15 3 0 3 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATCCGTATACACGACCCTAT................ 26 1 20 0.15 3 0 3 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATCCGTATACACGACCCTA................. 25 1 20 0.15 3 0 3 0 0 0 0 0
.....................................................................................................................................................................ACGGGAACGACGGTTTTTTAACGG.............................................................. 24 0 20 0.15 3 1 2 0 0 0 0 0
....................................................................................................................................................................TACGGGAACGACGGTTTTTTAACGTT............................................................. 26 1 20 0.15 3 3 0 0 0 0 0 0
....................................................................................................................................................................TACGGGAACGACGGTTTTTTAACGG.............................................................. 25 0 20 0.15 3 0 3 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTT....................................................................... 18 0 20 0.15 3 3 0 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACCCTATAA.............. 28 0 20 0.15 3 0 3 0 0 0 0 0
.................................................................................................................................................................CTATACGGGAACGACGGTTTTTTAACGG.............................................................. 28 1 20 0.15 3 3 0 0 0 0 0 0
............................................................................................................................................................................................................................TATACACGACCCTGTAACCAGTTTGT..... 26 1 20 0.15 3 0 0 3 0 0 0 0
...............................................................................................................................................................GAATATACGGGAACGACGGTTTTTT................................................................... 25 0 20 0.15 3 0 3 0 0 0 0 0
...................................................................................................................................................................ATACGGGAACGACGGTTTTTTAACG............................................................... 25 0 20 0.15 3 0 3 0 0 0 0 0
..................................................................................................................................................................................TTTTTTAACGGTTTTATGATTATATG............................................... 26 0 20 0.15 3 0 3 0 0 0 0 0
.....................................................................................................................................................................................................................ATATACGTATACACGACCCTA................. 21 0 20 0.15 3 0 3 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACCCGCCCCTATA............... 27 2 20 0.10 2 0 0 2 0 0 0 0
.............................................................................................................................................................................................................TTTTTTATATATACGTATACACGACCC................... 27 0 20 0.10 2 2 0 0 0 0 0 0
....................................................................................................................................................................TACGGGAACGACGGTTTTTTAACGGT............................................................. 26 0 20 0.10 2 0 0 2 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTAAACGGT............................................................. 28 1 20 0.10 2 0 2 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTA.................................................................. 23 0 20 0.10 2 0 2 0 0 0 0 0
..........................................................................................................................................................................................................................CGTATACACGACCCTATAACCAGTTTG...... 27 0 20 0.10 2 0 2 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTT...................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0
....................................................................................................................................................................TACGGTAACGACGGTTTTTTAACGGC............................................................. 26 2 20 0.10 2 2 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAGCGGT............................................................. 28 1 20 0.10 2 0 0 2 0 0 0 0
.........................................................................................................................................................TAGCTGGAATATACGGGAACGACGGTT....................................................................... 27 0 20 0.10 2 0 0 0 0 2 0 0
..............................................................................................................................................................................................................................TACACGACCCTATAACCAGTTTGT..... 24 0 20 0.10 2 0 2 0 0 0 0 0
..................................................................................................................................................................TATGCGGGAACGACGGTTTTTTAACGGT............................................................. 28 1 20 0.10 2 0 0 2 0 0 0 0
...................................................................................................................................................................AGACGGGAACGACGGTTTTTTAACGGT............................................................. 27 1 20 0.10 2 2 0 0 0 0 0 0
..................................................................................................................................................................................TTTTTTAACGGTTTTATGATTATATGAT............................................. 28 0 20 0.10 2 0 0 2 0 0 0 0
....................................................................................................................................................................................................................TATATACGTATACACGACCCTATAACCAG.......... 29 0 20 0.10 2 1 1 0 0 0 0 0
..........................................................................................................................................................AGCTGGAATATACGGGAACGACGG......................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0
................................................................................................................................................................................................................ATTATATATACGTATACACGACCCTAT................ 27 1 20 0.10 2 0 0 2 0 0 0 0
.......................................................................................................................................................................GGGAACGACGGTTTTTTAACGGT............................................................. 23 0 20 0.10 2 1 1 0 0 0 0 0
..................................................................................................................................................................TATACGCGAACGACGGTTTTTTAACGGT............................................................. 28 1 20 0.10 2 2 0 0 0 0 0 0
............................................................................................................................................GACTGAATCTAAGTAGCTG............................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 2
.................................................................................................................................................................CTATACGGGAACGACGGTTTTTTAACG............................................................... 27 1 20 0.10 2 2 0 0 0 0 0 0
................................................................................................................................................................................................................TTTATATATACGTATACACGACCC................... 24 0 20 0.10 2 0 2 0 0 0 0 0
....................................................................................................................................................................TTCGGGAACGACGGTTTTTTAACGGT............................................................. 26 1 20 0.10 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTTTTATATATACGTATACACGACCCTA................. 29 0 20 0.10 2 0 2 0 0 0 0 0
....................................................................................................................................................................TACGGGAACGACGGTTTTTTAACGGTT............................................................ 27 0 20 0.10 2 0 0 0 2 0 0 0
..........................................................................................................................................................AGCTGGAATATACGGGAACGAC........................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTGTTTAACGGT............................................................. 28 1 20 0.10 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................................TATATATACGTATACACGACCCTATAACC............ 29 0 20 0.10 2 2 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAACGGG............................................................. 28 1 20 0.10 2 0 1 0 0 1 0 0
..................................................................................................................................................................TATACGGGGACGACGGTTTTTTAACGGT............................................................. 28 1 20 0.10 2 2 0 0 0 0 0 0
................................................................TAAATGCACTACATATCTATA...................................................................................................................................................................... 21 3 19 0.05 1 0 0 0 0 0 1 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTGACGGC............................................................. 28 2 20 0.05 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACGCTATA............... 27 1 20 0.05 1 0 1 0 0 0 0 0
.............................................................................................................................................................TTGAATATACGGGAACGACGGT........................................................................ 22 1 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TATACGTATACACGACCCTATAACCAGTA........ 29 1 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................CTATACGGGACCGACGGTTTTTTAACGGT............................................................. 29 2 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................ATATACGGGAACGACGGTTTTTTGACGG.............................................................. 28 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TATATATACGTATACACGACCCT.................. 23 0 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TGCGTATACACGACCCTATAACCAGC......... 26 2 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TATACACGACCCTATAACCAGTT........ 23 0 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TACACGGAAACGACGGTTTTTTAAC................................................................ 25 2 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TTTACGGGAACGACGGTTTTTTAACG............................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGTTTTTTTAACGT.............................................................. 27 2 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................TATACGCGAACGACGGTTTTTGAACGG.............................................................. 27 2 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACCCGACCCTATA............... 27 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................TATACGGGAACAACGGTTTTTTAACG............................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................AGCTGGACTATACGGGAACGACGGTT....................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TATACGGTAACGACGGTTTTTTAACGGC............................................................. 28 2 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................ATATACGGGGACGACGGTTTTTTAACGG.............................................................. 28 1 20 0.05 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................TACACGACCCTGTAACCAGTTTGTTTG.. 27 1 20 0.05 1 0 1 0 0 0 0 0
............................................................................................................................................................................................GTTTTATGATTATATGATTTTTTATATA................................... 28 0 20 0.05 1 0 1 0 0 0 0 0
....................................................................................................................................................................TACGTGAACGACGGTTTTTTAACGGT............................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................................TTTTAACGGTTTTATGATTATATGATT............................................ 27 0 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TTATATAAACGTATACACGACCCTAT................ 26 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................................TTTTTTAACGGTTTTATGATTATA................................................. 24 0 20 0.05 1 0 1 0 0 0 0 0
...................................................................................................................................................................................TTTTTAACGGTTTGAT........................................................ 16 1 20 0.05 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................ACACGACCCTATAACCAGT......... 19 0 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................CTGGAATATACGGGAACGACG.......................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TACACACGACCCTATAACCAGTTTG...... 25 1 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................TACGGGAACGACGGTTTTTTA.................................................................. 21 0 20 0.05 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................TACACGACCCTATAACCAGTTTGTTTT.. 27 1 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TGCACGACCCTATAACCAGTTTGTTAC.. 27 3 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TGATTTTTTATATATACGTATACACG....................... 26 0 20 0.05 1 0 0 0 1 0 0 0
....................................................................................................................................................................................TTTTAACGGTTTTATGATTATA................................................. 22 0 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGTCGGTTTTTTAACGGC............................................................. 28 2 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TATTCGTGAACGACGGTTTTTTAACGGC............................................................. 28 3 20 0.05 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................TAACGGTTTTATGATTATATGATTTT.......................................... 26 0 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................GAATATACGGGAACGACGGC........................................................................ 20 1 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................TACGGGAACGACGTTTTTTTAACGGC............................................................. 26 2 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TATACACGACCCTATAACCAGC......... 22 1 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................TACGTGAACGACGGTTTTTTAACGGC............................................................. 26 2 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACC.................... 22 0 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................................CGGGAACGACGGTTTTTTAACG............................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TACGTATAGACGACCCTATAACCAGTT........ 27 1 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................AAGTATCTGGAATATACGGGAACGAC........................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................................................................TTAACGGTTTTATGATTATATGATTTT.......................................... 27 0 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................ATATATACGTATACACGACCCTATAAC............. 27 0 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................................................GCTGGAATATACGGGAACG............................................................................. 19 0 20 0.05 1 0 1 0 0 0 0 0
...................................................................................................................................................................................TTTTTAACGGTTTTAT........................................................ 16 0 20 0.05 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................ATACGTATACACGACCCTATAACCAGTT........ 28 0 20 0.05 1 0 1 0 0 0 0 0
....................................................................................................................................................................TGCGGGAACGACGGTTTTTTAACGGTTT........................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................ATATACGGGAACGACGGTTTTT.................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0
.............................................................................................................................................................GTGAATATACGGGAACGACGGTTTT..................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTT................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0
..................................................................................................................................................................TATTCGGGAACGACGGTTTTTTAACGGTT............................................................ 29 1 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................GATACGGGAACGACGGTTTTTTAACGGG............................................................. 28 2 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACCCTATAACCAGTTTGTTTGA. 22 0 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TTTCTATATATACGTATACACGACCC................... 26 1 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................CTATACGGGAACGACGTTTTTTTAACGGT............................................................. 29 2 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TATTCGGTAACGACGGTTTTTTAACGGT............................................................. 28 2 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TTTTTATATATACGTATACACGACCC................... 26 0 20 0.05 1 0 0 0 1 0 0 0
....................................................................................................................................................................TATGGGAACGACGGTTTTTTAACGG.............................................................. 25 1 20 0.05 1 0 0 0 0 1 0 0
..........................................................................................................................................................................AACGACGGTCTTTTAACGGTTTTATGAT..................................................... 28 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................GATACGGGAACGACGGTTTTTTAACGG.............................................................. 27 1 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TATACGTAGACACGACCCTA................. 20 1 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................GTAGCTGGAATATACGGGAACGACGGC........................................................................ 27 1 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................GTAGCTGGAATATACGGGAACGACGGT........................................................................ 27 0 20 0.05 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................CGTATACACGACCCTATAAC............. 20 0 20 0.05 1 0 1 0 0 0 0 0
....................................................................................................................................................................TACGGGACCGACGGTTTTTTAACGGC............................................................. 26 2 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAAAGACGGTTTTTTAACGGC............................................................. 28 2 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................................CGGTTTTTTGACGGTTT........................................................... 17 1 20 0.05 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................ATGATTATATGATTTTTTATATATA................................. 25 0 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACCCCAT................ 26 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................CATACGGGAACGACGGTTTTTTAACGG.............................................................. 27 1 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TACACGACCCTATAACCAGTTTGTTT... 26 0 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................AATACGGGAACGACGGTTTTTTAA................................................................. 24 1 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................................................................ACGACGGTTGTTTAACGGTTTTATGAT..................................................... 27 1 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................................................................................TAGCTGGATTATACGGGAACGACGGT........................................................................ 26 1 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TACGTATACACGACCCTAT................ 19 0 20 0.05 1 0 1 0 0 0 0 0
.........................................................................................................................................................AAGCTGGAATATACGGGAACGACGGTTT...................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................GACGTATACACGACCCTATAACCAGTT........ 27 1 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................GGTTTTATGATTATATGATT............................................ 20 0 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGCACGACGGTTTTTTAACG............................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................TAGGGGAACGACGGTTTTTTAACGGC............................................................. 26 2 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................TACACGACCCTATAACCCGTTTGTTTGAT 29 1 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................................................................................TAGTTGGAATATACGGGAACGACGGTTT...................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0
.............................................................................................................................................................TTGAAGATACGGGAACGACGGTTTT..................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACCCTT................. 25 1 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TTTACGGGAACGACGGTTTTTTAAC................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TATACACGACCCTATAACCA........... 20 0 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGAAGGTTTTTTAACGG.............................................................. 27 1 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................................................................ACGACGGTTTTTTAACGGTTT........................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACTCTA................. 25 1 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TATATATAAGTATACACGACCG................... 22 2 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGAGGGTTTTTTAACGA.............................................................. 27 2 20 0.05 1 0 0 1 0 0 0 0
............................................................................................................................................................CTGGAATATACGGGAACGACGGTTTTT.................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACGCTAT................ 26 1 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGACCGACGGTTTTTTAACGGTTT........................................................... 30 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................TATACGGGACCGACGGTTTTTTCACGG.............................................................. 27 2 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................TTTACGGGAACGACGGTTTTTTAACGT.............................................................. 27 2 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................................................................AATATACGGGAACGACGGTTTTTTAACC............................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................................ATACGGGAACGACGGTTTTTTAAGGGT............................................................. 27 1 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTATTTTAACGGT............................................................. 28 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................TATACGTGAACGCCGGTTTTTTAACGG.............................................................. 27 2 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGACGGTTTTTTAAAGGTT............................................................ 29 1 20 0.05 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................TATACACGACCCTCTAACCAGTTTGT..... 26 1 20 0.05 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................TTATATATACGTATACACGACCCTATAT.............. 28 1 20 0.05 1 0 1 0 0 0 0 0
....................................................................................................................................................................TACGGGAACGAGGGTTTTTTAACGGT............................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................................AACGACGGTTTTTTAACGGTTT........................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0
....................................................................................................................................................................TACGGTAACGACGGTTTTTTAACGGT............................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................TGGAAGTAGCTGGAATATACCGGAACC............................................................................. 27 3 20 0.05 1 1 0 0 0 0 0 0
.............................................................................................................................................................TGGAATATACGGGAACGACGGTTT...................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................CGACCCTATAACCAGTTTGTTTGA. 24 0 20 0.05 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................TTTAACGGTTTTATGATTATATGATTTT.......................................... 28 0 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGAGGGTTTTTTAACGGTTG........................................................... 30 2 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................................TTTTTTAACGGCTTTATGATTATATGATT............................................ 29 1 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................................................................................GGAATATACGGGAACGACGGTTTTT.................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0
............................................................................................................................................................CGGGAATATACGGGAACGACGGTTT...................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0
.............................................................................................................................................................TGGAATATACGGGAACGACG.......................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGCCGGTTTTTTAACGGC............................................................. 28 2 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................TAGCTGGAATATACGGGAATGACGG......................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0
..................................................................................................................................................................TATACGGGCACGACGGTTTTTTAACGGT............................................................. 28 1 20 0.05 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TATACACGACCCTATAACCAGTTT....... 24 0 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................TATACGGGAACGCCGGTTTTTTAACGG.............................................................. 27 1 20 0.05 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATATACGTATACACGACCCT.................. 20 0 20 0.05 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................CGTATACACGACCCTATAACC............ 21 0 20 0.05 1 0 1 0 0 0 0 0
....................................................................................................................................................................................TGTTAACGGTTTTATGATTATATGATT............................................ 27 1 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................AGATACGGGAACGACGGTTTTTTAACG............................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................CTATACGGGAACGACGGTTTTTTAACGGG............................................................. 29 2 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................GAATATACGGGAACGACGGTTTTTTAAC................................................................ 28 0 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

AGGCCGCCGCCTCTAACAGACCAAGGTCCCGCTCCAAGGTCAAAGCTGTCCACTCAAGTTCTGTATATACATGATGTATTGATATAAAAATTCCACGAATATTTTTATGCTTGAATGTTCCGTAAGTTCGAAATTTAATTATAACTTACATTCATCGACCTTATATGCCCTTGCTGCCAAAAAATTGCCAAAATACTAATATACTAAAAAATATATATGCATATGTGCTGGGATATTGGTCAAACAAACTA
**************************************************((((((((......((((.(((((..................))))).)))).......))))))))...((((((((..((......))..))))))))..((..(((.......)))..))(((.(((....))).)))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M056
embryo
 M043
female body
 GSM1528802
follicle cells
..........................TCCCGCCTTAAGGTCAAAGCTG........................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0
................................................................................................................................................................................................................................GTGCTGGGATATTGGTCAAACAAACT. 26 0 20 0.45 9 0 9 0
....................................................................................................................................................................................................................................TGGGATATTGGTCAAACAAACT. 22 0 20 0.25 5 0 0 5
..............................................................................................................................................................................TGCCAAAAAATTGCCAAAATACTAATAT................................................. 28 0 20 0.15 3 0 3 0
..............................................................................................................................................................................................................................ATGTGCTGGGATATTGGTCAAACAAACT. 28 0 20 0.10 2 0 2 0
.......................................................................................................................CCGTAAGGTCGGAAGTTAAT................................................................................................................ 20 3 14 0.07 1 1 0 0
.......................................................................................................................................................................CCCTTGCTGCCAAAAATTTG................................................................ 20 1 20 0.05 1 1 0 0
.....................................................................................................................................................................................................................................GGGATATTGGTCAAACAA.... 18 0 20 0.05 1 1 0 0
...........................................................................................................................................................................................................................CATATGTGCTGGGATATTGGTCAA........ 24 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droYak3 2R:10851848-10852098 + dya_536 TCCGGCGG-------------------------CGGAGATTGTCTGGTTCCAGGGCGAGGTTCCAGTTTCGACAGGTGAGTTCAAGACATATATGTACTACA-TAACTATATTTTTAAGGTGCTTATAAAA--------------------------------------------------------ATACGAAC--TTACAAGGCATT----CAAGC-TTTAAATTAATATTGAATGTAAGTAGCTGGAATATACGGGAACGACGGTTTTT----T-AACGGTTTTATGATTATA----------------TGA-TTT--------------TTTATATATACGTATACACGA-CCCTATAACCAGTTTGTTTGAT----------------------------
droEre2 scaffold_4845:14935452-14935600 - TCCGGCGG-------------------------CGGAGATTGTTTGGTTCCAGGGCGAGGTTCCAGTTTCGACAGGTGCGTTCCAGTC--ATGTGCTCTATAGTAACCATAAC-CTAGCTTGCCTACATAA--------------------------------------------------------AAGCCAAGTATTAACAGTCATT----CAAGC-TTCTAATTAATGTCAATT-------------------------------------------------------------------------------------------------------------------------------------------G----------------------------
droSec2 scaffold_1:8433829-8433960 + TCCGGCGG-------------------------CGGAGATTTTCTGGTTCCAGGGCGAAGTTCCAGTCTCCACGGGTGAGTTCAAGTC--------------------------------------------------ATCTTATATTCATAG----------CTACTAACCTATAATAATAAA------------------AAGTATA----TAAGC-TTTGAATCAATATCAAATTT-----------------------------------------------------------------------------------------------------------------------------------------A----------------------------
droSim2 2r:11611040-11611171 + TCCGGCGG-------------------------CGGAGATTGTCTGGTTCCAGGGCGAAGTTCCAGTCTCTACGGGTGAGTTCAAGTC--------------------------------------------------ATCTAATATCCATAG----------CTACTAAACTGTAATAATACA------------------AAGTATA----TAAGC-TTTGAATCAATATCAAATTT-----------------------------------------------------------------------------------------------------------------------------------------A----------------------------
dm3 chr3LHet:1018389-1018537 + TAAAAACG-------------------------TGAG---------CCTCCAAAGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGAAAGTAGCTGGAATATACGGGTACTGCTCTTT-T----T-AAAGGCTTAATGATTTTGTTATATATATTTTTTATGTTTTT--------------TTTATATATAAGTATACAAGA-CCCTATAACAAGTTTGTATGAT----------------------------
droEug1 scf7180000406037:240-406 + CTTGTTAAATTTCTAACAACACTGCATTCACAGCTAAAATTGCG-AATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGA----------TCCAAGTAGCTAGAACATAGGACATAGGCTGATTATAGTAC-ATCAGTTTTACATTTAGC----------------TGA-CTTG---ATTTTAAAATTTTAAATACTTGTATGCA-----CTGATACTCGGTATGTATGTG----------------------------
droBia1 scf7180000302142:33267-33471 - GGGATA----------------------------------------------------GGTTACGCTTACGAAAGGTAATCTCTGTGT--AAGC--------------AAGGT-ACAACAT--TTGTGCAAGATGTTG------CAGTGCAACCATTAGA------------------------------------------ATTTTCT----CAAGC-CTTAAGC----------TGAGAGTAGCTAAAATAAGGGGGATCAGAGGTTTTT----TCGACGATTTTGTTTAAA--------------------------------------------------------------TTCATAATCAGTGTGTTTGCGATCCGAGGGAATCGTATCGTTTTATTGC
droTak1 scf7180000414360:2968-3167 - ATCATATT-------------------------TTTAGATTCCTTAAAAACATA-------------------------------------------------------------------------------------TATTAAATTCAGAT----------TGTTTAAACAAATATAATAAATGAATGTG----------A----TT----CAAGTAAAAGTGG----------TGAAAGTAGCTAGAATAAGCGGGAGCGGCGATTTTT----TTATTAGTTTTGTATAAAAT----------------CGT-AAATTAGTT--------AACAGACGCAAACATATACGATTCCCATAATCAGTGTGTTTGAT----------------------------
droEle1 scf7180000487177:11515-11679 + GTTTAAAAAA-------------------------------GTTTGAAAAC------ACAATATGTATAAACCAAATTA---CAC-CAAAA--------------------------------------------------------------------------------------------------------------------------------AATGTAT----------TGATAATAGCTGGAATATACGGGAGCGGCGGGTTTT----T-AACGGTTTTATATTCAGT----------------TGA-ATTT---TT--------TCCAAATGCATTCACATACAAATTTCATAATCAGTGCACATGAT----------------------------
droRho1 scf7180000776849:920903-921018 - TCCTGCGG-------------------------CGGAGATTGTCTGGTTCCAGGGCGAAGTGCCAGTCAACACGGGTGAGTTTTAGTC--------------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------T----T-TAAAATTCAGAAAAACTAAAACATATTATAC---------------CTTTAAAGTTA------------------------------------TAAAGA----------------------------
droFic1 scf7180000453342:981207-981266 - TCCGGCGG-------------------------CGGAGATTGTCTGGTTCCAGGGCGAGGTGCCAGTTGCCACAGGTGAGTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302367:213286-213341 - TCCGGCGG-------------------------CGGAGATCGTGTGGTTTCAGGGCGATGTGCCAGTACAGAAAGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:1311402-1311544 - GCCGGCGG-------------------------CCCAAATCGTATGGTATCGCGGCAATGTGGAGTACAAGCCAGGTAAGCATAATCC------------------------------------------------------TTGAGTCATAATATTAAATTTTTATTAATTTACAAGATGGTA------------------GATTATATCATTAAGT-TTTAAAGTAATTCAAAGTGG----------------------------------------------------------------------------------------------------------------------------------------AA----------------------------
droBip1 scf7180000396759:1457423-1457479 - TCCGGCGG-------------------------CGGAGATTGTCTGGTACCAGGGTGATGTACCAGTGCCTATGGGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:8814750-8814809 + TCCGGCGG-------------------------CGGAGATTGTCTGGTACCAGGGCGAAGTACCGATTACAATGGGTAAGTCCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_4:2699863-2699922 + TCCGGCGG-------------------------CGGAGATTGTCTGGTACCAGGGCGAAGTACCGATTACAATGGGTAAGTCCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004512:2335982-2336037 + TCCGGCAG-------------------------CGGAAATAGTCTGGTATCAGGGCGATGTGCCAGTTGATATAGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13324:2913657-2913739 + GCCGGAAG-------------------------CACAAATCGTTTGGTATCGTGGAAACGTCGAATATAAGCCAGGTTGGTAAAC-AGAAATATGTATTATAACAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------
droMoj3 scaffold_6496:17262243-17262297 - TCCGGCGG-------------------------CGGAGATTGTCTGGTATCAGGGCGAGACGCCGTTGACATTGGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:3773162-3773240 + GCCGGAAG-------------------------CCCAAATCGTTTGGTATCGTGGCAATGTTGAATATAAGCCAGGTTAGTACATATA------------------------------------------------------TCTACACATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATA----------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TCCGGCGG-------------------------CGGAGATTGTCTGGTTCCAGGGCGAGGTTCCAGTTTCGACAGGTGAGTTCAAGACATATATGTACTACA-TAACTATATTTTTAAGGTGCTTATAAAA--------------------------------------------------------ATACGAAC--TTACAAGGCATT----CAAGC-TTTAAATTAATATTGAATGTAAGTAGCTGGAATATACGGGAACGACGGTTTTT----T-AACGGTTTTATGATTATA----------------TGA-TTT--------------TTTATATATACGTATACACGA-CCCTATAACCAGTTTGTTTGAT----------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-AACGGC.........................................................................................................................282028.705740057400000000
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-AAC............................................................................................................................252010.752150021500000000
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-AACG...........................................................................................................................26206.151230487400100000
..............................................................................................................................................................................................................................................................................................................................................TTATATATACGTATACACGA-CCCTATA...........................................27203.8577076100000000
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-AACGGTTT.......................................................................................................................30201.8537000000000037
............................................................................................................................................................................................................................................................ATACGGGAACGACGGTTTTT----T-AACGGT.........................................................................................................................27201.3026026000000000
...........................................................................................................................................................................................................................................................................................................................................................TACACGA-CCCTATAACCAGTTTGTTTGA.............................28201.1523021200000000
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-AACGGT.........................................................................................................................28201.1022000220000000
......................................................................................................................................................................................................................................................TGGAATATACGGGAACGACGGTTTTT----.................................................................................................................................26201.0521002100000000
...............................................................................................................................................................................................................................................................................................................................................TATATATACGTATACACGA-CCCTA.............................................24201.0521021000000000
.....................................................................................................................................................................................................................................................................................................................................................TACGTATACACGA-CCCTATAACCAGTT....................................27201.0020020000000000
......................................................................................................................................................................................................................................................TGGAATATACGGGAACGACGGTTTT......................................................................................................................................25200.9519001800010000
...............................................................................................................................................................................................................................................................................................................................................TATATATACGTATACACGA-CCCTAT............................................25200.9018018000000000
...................................................................................................................................................................................................................................................................AACGACGGTTTTT----T-AACGGTTTTATGAT.................................................................................................................28200.7515000000000015
............................................................................................................................................................................................................................................................ATACGGGAACGACGGTTTTT----T-AACGG..........................................................................................................................26200.6012010100010000
.......................................................................................................................................................................................................................................................................ACGGTTTTT----T-AACGGT.........................................................................................................................16200.6012000000000012
.............................................................................................................................................................................................................................................................TACGGGAACGACGGTTTTT----T-AACG...........................................................................................................................24200.551103700010000
...............................................................................................................................................................................................................................................................................................................................................................CGA-CCCTATAACCAGTTTGTTTGAT----------------------------25200.5511000000000011
..................................................................................................................................................................................................................................................TAGCTGGAATATACGGGAACGAC............................................................................................................................................23200.5010001000000000
......................................................................................................................................................................................................................................................TGGAATATACGGGAACGACGGTTTTT----T-...............................................................................................................................27200.45900900000000
.............................................................................................................................................................................................................................................................................................................................................TTTATATATACGTATACACGA-CCCTAT............................................27200.40800000000008
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-AA.............................................................................................................................24200.35705000020000
.............................................................................................................................................................................................................................................................TACGGGAACGACGGTTTTT----T-AACGGTTT.......................................................................................................................28200.35707000000000
..............................................................................................................................................................................................................................................................................................................................................TTATATATACGTATACACGA-CCC...............................................23200.30606000000000
...............................................................................................................................................................................................................................................................................................................................................TATATATACGTATACACGA-CCCTATAAC.........................................28200.30606000000000
..................................................................................................................................................................................................................................................TAGCTGGAATATACGGGAACGACG...........................................................................................................................................24200.30606000000000
...................................................................................................................................................................................................................................................AGCTGGAATATACGGGAACGACGGT.........................................................................................................................................25200.30600600000000
.....................................................................................................................................................................................................................................................................................................................................................TACGTATACACGA-CCCTATAACCAGT.....................................26200.30600600000000
..................................................................................................................................................................................................................................................TAGCTGGAATATACGGGAACGACGGT.........................................................................................................................................26200.25500040010000
..................................................................................................................................................................................................................................................TAGCTGGAATATACGGGAACGACGGTC........................................................................................................................................27200.25500500000000
..................................................................................................................................................................................................................................................................................................................................................ATATACGTATACACGA-CCCTAT............................................22200.20404000000000
.................................................................................................................................................................................................................................................GTAGCTGGAATATACGGGAACGACGG..........................................................................................................................................26200.20400400000000
...............................................................................................................................................................................................................................................AAGTAGCTGGAATATACGGGAACGACGG..........................................................................................................................................28200.20400400000000
......................................................................................................................................................................................................................................................................................................................................................ACGTATACACGA-CCCTATAACCAGTT....................................26200.15303000000000
..............................................................................................................................................................................................................................................................ACGGGAACGACGGTTTTT----T-AACGG..........................................................................................................................24200.15302100000000
.............................................................................................................................................................................................................................................................TACGGGAACGACGGTTTTT----T-AACGG..........................................................................................................................25200.15303000000000
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTT........................................................................................................................................18200.15300300000000
..............................................................................................................................................................................................................................................................................................................................................TTATATATACGTATACACGA-CCCTATAA..........................................28200.15303000000000
........................................................................................................................................................................................................................................................GAATATACGGGAACGACGGTTTTT----T-...............................................................................................................................25200.15303000000000
............................................................................................................................................................................................................................................................ATACGGGAACGACGGTTTTT----T-AACG...........................................................................................................................25200.15303000000000
...........................................................................................................................................................................................................................................................................TTTTT----T-AACGGTTTTATGATTATA----------------TG...........................................................................................26200.15303000000000
..................................................................................................................................................................................................................................................................................................................................................ATATACGTATACACGA-CCCTA.............................................21200.15303000000000
............................................................................................................................................................................................................................................................................................................................TTT--------------TTTATATATACGTATACACGA-CCC...............................................27200.10200200000000
.............................................................................................................................................................................................................................................................TACGGGAACGACGGTTTTT----T-AACGGT.........................................................................................................................26200.10200000000002
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-A..............................................................................................................................23200.10202000000000
.......................................................................................................................................................................................................................................................................................................................................................CGTATACACGA-CCCTATAACCAGTTTG..................................27200.10202000000000
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTT.......................................................................................................................................19200.10200200000000
..................................................................................................................................................................................................................................................TAGCTGGAATATACGGGAACGACGGTT........................................................................................................................................27200.10200000020000
...........................................................................................................................................................................................................................................................................................................................................................TACACGA-CCCTATAACCAGTTTGT.................................24200.10202000000000
...........................................................................................................................................................................................................................................................................TTTTT----T-AACGGTTTTATGATTATA----------------TGA-T........................................................................................28200.10200000000002
.................................................................................................................................................................................................................................................................................................................................................TATATACGTATACACGA-CCCTATAACCAG......................................29200.10201100000000
...................................................................................................................................................................................................................................................AGCTGGAATATACGGGAACGACGG..........................................................................................................................................24200.10200200000000
................................................................................................................................................................................................................................................................GGGAACGACGGTTTTT----T-AACGGT.........................................................................................................................23200.10201100000000
.............................................................................................................................................................................................................................................................................................................................................TTTATATATACGTATACACGA-CCC...............................................24200.10202000000000
............................................................................................................................................................................................................................................................................................................................TTT--------------TTTATATATACGTATACACGA-CCCTA.............................................29200.10202000000000
.............................................................................................................................................................................................................................................................TACGGGAACGACGGTTTTT----T-AACGGTT........................................................................................................................27200.10200020000000
...................................................................................................................................................................................................................................................AGCTGGAATATACGGGAACGAC............................................................................................................................................22200.10200200000000
...............................................................................................................................................................................................................................................................................................................................................TATATATACGTATACACGA-CCCTATAACC........................................29200.10200200000000
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-AACGGG.........................................................................................................................28200.10201000010000
...................................................................................................................................................................................................................................................................................................................................................TATACGTATACACGA-CCCTATAACCAGTA....................................29200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................TATATATACGTATACACGA-CCCT..............................................23200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................TATACACGA-CCCTATAACCAGTT....................................23200.05101000000000
..........................................................................................................................................................................................................................................................................................GTTTTATGATTATA----------------TGA-TTT--------------TTTATATA................................................................28200.05101000000000
.............................................................................................................................................................................................................................................................................TTT----T-AACGGTTTTATGATTATA----------------TGA-TT.......................................................................................27200.05101000000000
...........................................................................................................................................................................................................................................................................TTTTT----T-AACGGTTTTATGATTATA----------------.............................................................................................24200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................ACACGA-CCCTATAACCAGT.....................................19200.05100100000000
.....................................................................................................................................................................................................................................................CTGGAATATACGGGAACGACG...........................................................................................................................................21200.05100100000000
.............................................................................................................................................................................................................................................................TACGGGAACGACGGTTTTT----T-A..............................................................................................................................21200.05100000010000
...........................................................................................................................................................................................................................................................................................................................................................TACACGA-CCCTATAACCAGTTTGTTTT..............................27200.05101000000000
........................................................................................................................................................................................................................................................................................................................TGA-TTT--------------TTTATATATACGTATACACG....................................................26200.05100010000000
.............................................................................................................................................................................................................................................................................TTT----T-AACGGTTTTATGATTATA----------------.............................................................................................22200.05101000000000
....................................................................................................................................................................................................................................................................................T-AACGGTTTTATGATTATA----------------TGA-TTT--------------T.......................................................................26200.05100100000000
........................................................................................................................................................................................................................................................GAATATACGGGAACGACGGC.........................................................................................................................................20200.05100100000000
.........................................................................................................................................................................................................................................................................................................................................................TATACACGA-CCCTATAACCAGC.....................................22200.05100100000000
..............................................................................................................................................................................................................................................................................................................................................TTATATATACGTATACACGA-CC................................................22200.05101000000000
...............................................................................................................................................................................................................................................................CGGGAACGACGGTTTTT----T-AACG...........................................................................................................................22200.05101000000000
...............................................................................................................................................................................................................................................................................T----T-AACGGTTTTATGATTATA----------------TGA-TTT--------------T.......................................................................27200.05100100000000
................................................................................................................................................................................................................................................................................................................................................ATATATACGTATACACGA-CCCTATAAC.........................................27200.05101000000000
....................................................................................................................................................................................................................................................GCTGGAATATACGGGAACG..............................................................................................................................................19200.05101000000000
............................................................................................................................................................................................................................................................................TTTT----T-AACGGTTTTAT....................................................................................................................16200.05100000000001
....................................................................................................................................................................................................................................................................................................................................................ATACGTATACACGA-CCCTATAACCAGTT....................................28200.05101000000000
..........................................................................................................................................................................................................................................................ATATACGGGAACGACGGTTTTT----.................................................................................................................................22200.05101000000000
...........................................................................................................................................................................................................................................................TATACGGGAACGACGGTTTTT----T-...............................................................................................................................22200.05100010000000
.................................................................................................................................................................................................................................................................................................................................................................A-CCCTATAACCAGTTTGTTTGA.............................22200.05101000000000
.............................................................................................................................................................................................................................................................................................................................TT--------------TTTATATATACGTATACACGA-CCC...............................................26200.05100010000000
.................................................................................................................................................................................................................................................GTAGCTGGAATATACGGGAACGACGGC.........................................................................................................................................27200.05100100000000
.................................................................................................................................................................................................................................................GTAGCTGGAATATACGGGAACGACGGT.........................................................................................................................................27200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................CGTATACACGA-CCCTATAAC.........................................20200.05101000000000
...............................................................................................................................................................................................................................................................................................ATGATTATA----------------TGA-TTT--------------TTTATATATA..............................................................25200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................TACACGA-CCCTATAACCAGTTTGTTT...............................26200.05100100000000
.....................................................................................................................................................................................................................................................................................................................................................TACGTATACACGA-CCCTAT............................................19200.05101000000000
.........................................................................................................................................................................................................................................................................................GGTTTTATGATTATA----------------TGA-TT.......................................................................................20200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................TTATATATACGTATACACGA-CCCTT.............................................25200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................TATACACGA-CCCTATAACCA.......................................20200.05101000000000
....................................................................................................................................................................................................................................................................ACGACGGTTTTT----T-AACGGTTT.......................................................................................................................21200.05101000000000
.....................................................................................................................................................................................................................................................CTGGAATATACGGGAACGACGGTTTTT----.................................................................................................................................27200.05100100000000
.........................................................................................................................................................................................................................................................AATATACGGGAACGACGGTTTTT----T-AACC...........................................................................................................................28200.05100100000000
..............................................................................................................................................................................................................................................................................................................................................TTATATATACGTATACACGA-CCCTATAT..........................................28200.05101000000000
...................................................................................................................................................................................................................................................................AACGACGGTTTTT----T-AACGGTTT.......................................................................................................................22200.05100010000000
......................................................................................................................................................................................................................................................TGGAATATACGGGAACGACGGTTT.......................................................................................................................................24200.05100010000000
...............................................................................................................................................................................................................................................................................................................................................................CGA-CCCTATAACCAGTTTGTTTGA.............................24200.05101000000000
..............................................................................................................................................................................................................................................................................TT----T-AACGGTTTTATGATTATA----------------TGA-TTT--------------T.......................................................................28200.05101000000000
.......................................................................................................................................................................................................................................................GGAATATACGGGAACGACGGTTTTT----.................................................................................................................................25200.05101000000000
......................................................................................................................................................................................................................................................TGGAATATACGGGAACGACG...........................................................................................................................................20200.05100100000000
.........................................................................................................................................................................................................................................................................................................................................................TATACACGA-CCCTATAACCAGTTT...................................24200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................ATATACGTATACACGA-CCCT..............................................20200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................CGTATACACGA-CCCTATAACC........................................21200.05101000000000
........................................................................................................................................................................................................................................................GAATATACGGGAACGACGGTTTTT----T-AAC............................................................................................................................28200.05101000000000
droEre2
TCCGGCGG-------------------------CGGAGATTGTTTGGTTCCAGGGCGAGGTTCCAGTTTCGACAGGTGCGTTCCAGTC--ATGTGCTCTATAGTAACCATAAC-CTAGCTTGCCTACATAA--------------------------------------------------------AAGCCAAGTATTAACAGTCATT----CAAGC-TTCTAATTAATGTCAATT-------------------------------------------------------------------------------------------------------------------------------------------G----------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................TGTTTGGTTCCAGGGCGAGGTTC......................................................................................................................................................................................................................................................................................................................................................2311.0010001000
droSec2
TCCGGCGG-------------------------CGGAGATTTTCTGGTTCCAGGGCGAAGTTCCAGTCTCCACGGGTGAGTTCAAGTC--------------------------------------------------ATCTTATATTCATAG----------CTACTAACCTATAATAATAAA------------------AAGTATA----TAAGC-TTTGAATCAATATCAAATTT-----------------------------------------------------------------------------------------------------------------------------------------A----------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droSim2
TCCGGCGG-------------------------CGGAGATTGTCTGGTTCCAGGGCGAAGTTCCAGTCTCTACGGGTGAGTTCAAGTC--------------------------------------------------ATCTAATATCCATAG----------CTACTAAACTGTAATAATACA------------------AAGTATA----TAAGC-TTTGAATCAATATCAAATTT-----------------------------------------------------------------------------------------------------------------------------------------A----------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
dm3
TAAAAACG-------------------------TGAG---------CCTCCAAAGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGAAAGTAGCTGGAATATACGGGTACTGCTCTTT-T----T-AAAGGCTTAATGATTTTGTTATATATATTTTTTATGTTTTT--------------TTTATATATAAGTATACAAGA-CCCTATAACAAGTTTGTATGAT----------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................AATATACGGGTACTGCTCTTT-......................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.................................TGAG---------CCTCCAAAGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGAAAG...................................................................................................................................................................2711.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGAAAGTAGCTGGAA..........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................T-T----T-AAAGGCTTAATGATTTTG.............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................TGAG---------CCTCCAAAGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TG.......................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TATGTTTTT--------------TTTATATAT...............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAAAACG-------------------------TGAG---------CCTCCAAAGC.............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGAAAGTAGCTGGAATATACGG...................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CAAAGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGAAAGTAGCTGG............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TAAGTATACAAGA-CCCTATAACAAGTT....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AAGTAGCTGGAATATACGGGT.................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AG---------CCTCCAAAGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGA......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................TGAG---------CCTCCAAAGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------T........................................................................................................................................................................2211.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................T-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGAAAGTAGCTGGAATATACGGG..................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AAAGCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGC----------TGAAAGTAGCTGG............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TATACGGGTACTGCTCTTT-T----T-AA.............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TAAAAACG-------------------------TGAG---------CCTCCAAAGCTT...........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TATATATTTTTTATGTTTTT--------------A.......................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TATATTTTTTATGTTTTT--------------A.......................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droEug1
CTTGTTAAATTTCTAACAACACTGCATTCACAGCTAAAATTGCG-AATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGA----------TCCAAGTAGCTAGAACATAGGACATAGGCTGATTATAGTAC-ATCAGTTTTACATTTAGC----------------TGA-CTTG---ATTTTAAAATTTTAAATACTTGTATGCA-----CTGATACTCGGTATGTATGTG----------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGGATA----------------------------------------------------GGTTACGCTTACGAAAGGTAATCTCTGTGT--AAGC--------------AAGGT-ACAACAT--TTGTGCAAGATGTTG------CAGTGCAACCATTAGA------------------------------------------ATTTTCT----CAAGC-CTTAAGC----------TGAGAGTAGCTAAAATAAGGGGGATCAGAGGTTTTT----TCGACGATTTTGTTTAAA--------------------------------------------------------------TTCATAATCAGTGTGTTTGCGATCCGAGGGAATCGTATCGTTTTATTGCSizeHit CountTotal NormTotal
No Reads
droTak1
ATCATATT-------------------------TTTAGATTCCTTAAAAACATA-------------------------------------------------------------------------------------TATTAAATTCAGAT----------TGTTTAAACAAATATAATAAATGAATGTG----------A----TT----CAAGTAAAAGTGG----------TGAAAGTAGCTAGAATAAGCGGGAGCGGCGATTTTT----TTATTAGTTTTGTATAAAAT----------------CGT-AAATTAGTT--------AACAGACGCAAACATATACGATTCCCATAATCAGTGTGTTTGAT----------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTTTAAAAAA-------------------------------GTTTGAAAAC------ACAATATGTATAAACCAAATTA---CAC-CAAAA--------------------------------------------------------------------------------------------------------------------------------AATGTAT----------TGATAATAGCTGGAATATACGGGAGCGGCGGGTTTT----T-AACGGTTTTATATTCAGT----------------TGA-ATTT---TT--------TCCAAATGCATTCACATACAAATTTCATAATCAGTGCACATGAT----------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCCTGCGG-------------------------CGGAGATTGTCTGGTTCCAGGGCGAAGTGCCAGTCAACACGGGTGAGTTTTAGTC--------------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------T----T-TAAAATTCAGAAAAACTAAAACATATTATAC---------------CTTTAAAGTTA------------------------------------TAAAGA----------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCCGGCGG-------------------------CGGAGATTGTCTGGTTCCAGGGCGAGGTGCCAGTTGCCACAGGTGAGTTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TCCGGCGG-------------------------CGGAGATCGTGTGGTTTCAGGGCGATGTGCCAGTACAGAAAGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCCGGCGG-------------------------CCCAAATCGTATGGTATCGCGGCAATGTGGAGTACAAGCCAGGTAAGCATAATCC------------------------------------------------------TTGAGTCATAATATTAAATTTTTATTAATTTACAAGATGGTA------------------GATTATATCATTAAGT-TTTAAAGTAATTCAAAGTGG----------------------------------------------------------------------------------------------------------------------------------------AA----------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TCCGGCGG-------------------------CGGAGATTGTCTGGTACCAGGGTGATGTACCAGTGCCTATGGGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCCGGCGG-------------------------CGGAGATTGTCTGGTACCAGGGCGAAGTACCGATTACAATGGGTAAGTCCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCCGGCGG-------------------------CGGAGATTGTCTGGTACCAGGGCGAAGTACCGATTACAATGGGTAAGTCCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCCGGCAG-------------------------CGGAAATAGTCTGGTATCAGGGCGATGTGCCAGTTGATATAGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GCCGGAAG-------------------------CACAAATCGTTTGGTATCGTGGAAACGTCGAATATAAGCCAGGTTGGTAAAC-AGAAATATGTATTATAACAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TCCGGCGG-------------------------CGGAGATTGTCTGGTATCAGGGCGAGACGCCGTTGACATTGGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCCGGAAG-------------------------CCCAAATCGTTTGGTATCGTGGCAATGTTGAATATAAGCCAGGTTAGTACATATA------------------------------------------------------TCTACACATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATA----------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:47 PM