ID:

dya_52

 Coordinate:

X:7229804-7229866 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.4 -45.4 -45.4

Flybase annnotation

utr5 [utr5_plus_14911]

No Repeatable elements found

Sense Strand Reads

CGCCGCGTTGTTTCGCTGCATGTGAGAGAATTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACAGAAAGAAAAACCCCTTTAAGAAAAAACACAAA

***********************************.((((((((.((((((((((((...((((.((((((.(((((((...)))).)))))))))))))...))))))))))))))))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total M056

embryo

 M026

head

 M043

female body

 V046

embryo

 V058

head

 V052

head

 V120

male body
..........................................................................................TTGGTGTTACTTCTTGCAGTGA................................................... 22 1 1 302.00 302 62 104 89 25 15 6 1
..........................................................................................TTGGTGTTACTTCTTACAGTGA................................................... 22 0 1 227.00 227 138 11 11 63 2 0 2
..................................................GCTGTAAATTGTAATCATCAAAGC......................................................................................... 24 0 1 69.00 69 39 28 1 0 0 1 0
..........................................................................................TTGGTGTTACTTCTTGCGGTGA................................................... 22 2 1 68.00 68 6 25 27 2 3 3 2
..................................................GCTGTAAATTGTAATCATCAAAG.......................................................................................... 23 0 1 36.00 36 4 29 2 1 0 0 0
..........................................................................................TGGGTGTTACTTCTTACAGTGA................................................... 22 1 1 22.00 22 22 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTG.................................................... 21 1 1 20.00 20 4 2 5 1 6 1 1
..........................................................................................TTGGTGTTACTTCTTGCAGTGG................................................... 22 2 1 20.00 20 0 20 0 0 0 0 0
..................................................GCTGTAAATTGTAATCATCA............................................................................................. 20 0 1 10.00 10 0 0 1 0 4 5 0
..............................TTCCGTGGCTGGCATCGCTC................................................................................................................. 20 0 1 10.00 10 1 9 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGTG.................................................... 21 2 1 8.00 8 0 3 1 0 2 2 0
..........................................................................................TGGGTGTTACTTCTTGCAGTGA................................................... 22 2 1 8.00 8 8 0 0 0 0 0 0
.........................................................................................CTTGGTGTTACTTCTTGCAGTGA................................................... 23 1 1 8.00 8 2 3 3 0 0 0 0
.............................ATTCCGTGGCTGGCATCGCTC................................................................................................................. 21 0 1 6.00 6 1 5 0 0 0 0 0
...........................................................................................TGGTGTTACTTCTTGCAGTGA................................................... 21 1 1 6.00 6 1 0 5 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGTGG................................................... 22 3 1 6.00 6 0 6 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAG...................................................... 19 0 1 6.00 6 6 0 0 0 0 0 0
..........................................................................................TTGGTGTTGCTTCTTGCAGTGA................................................... 22 2 1 5.00 5 0 0 5 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACGGTGA................................................... 22 1 1 5.00 5 4 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATCATC.............................................................................................. 19 0 1 4.00 4 0 3 1 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTG.................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................. 23 1 1 4.00 4 1 1 1 1 0 0 0
...........................................................................................TGGTGTTACTTCTTACAGTGA................................................... 21 0 1 4.00 4 0 0 4 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGAT.................................................. 23 2 1 3.00 3 0 0 1 1 0 1 0
.........................................................................................CTTGGTGTTACTTCTTACAGTGA................................................... 23 0 1 3.00 3 2 0 0 1 0 0 0
..........................................................................................TTCGTGTTACTTCTTACAGTGA................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0
..........................................................................................TCGGTGTTACTTCTTACAGTGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTGG................................................... 22 1 1 2.00 2 0 1 0 1 0 0 0
..........................................................................................TTGGAGTTACTTCTTACAGTGA................................................... 22 1 1 2.00 2 0 0 0 1 1 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGAA.................................................. 23 2 1 2.00 2 0 2 0 0 0 0 0
..........................................................................................TTGGTGTTCCTTCTTACAGTGA................................................... 22 1 1 2.00 2 0 1 0 1 0 0 0
..................................................GCTGTAAATTGTAATCATCAAAGCG........................................................................................ 25 0 1 2.00 2 0 1 0 1 0 0 0
..............................TTCCGTGGCTGGCATCCCTC................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0
..................................................GCTGAAAATTGTAATCATCAAAG.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGCGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
..................................................GCTGTAAATTGTAATCATCAA............................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0
..........................................................................................TTGGTTTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
............................AATTCCGTGGCTGGGATCGCTC................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................CTGGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................TTGGGGTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................GCCGTAAATTGTAATCATCAAAGCA........................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTAGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................TGGCGTTACTTCTTGCAGTGA................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................TTGGCGTTACTTCTTGCAGGGA................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................GTTGGTGTTACTTCTTGCGGTGA................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................TGGGTGTTACTTATTGCAGTGA................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGC................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................CTTGGTGTTACTTCTTGCGGTGA................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCATTGA................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
...............................TCCGTGGCTGGCATCGCTC................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATCGTCA............................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0
..........................................................................................TGGGTGTTACTTCTTACAGTGC................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGTGC................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0
........................................................................................GATTGGTGTTACTTCTTGCGGTGA................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................TGGTGTTACTTCTTGCGGTGA................................................... 21 2 2 1.00 2 0 0 2 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCCGTGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................TTGGTGTTACTTATTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGGGA................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TGGGTGGTACTTCTTACAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTGCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTTA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................GCGGTAAATTGTAATCATCAGA........................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGTGAA.................................................. 23 3 1 1.00 1 0 0 1 0 0 0 0
..................................................GCTGCAAATTGTAATCATCAAAG.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................GCTGTACATTGTAATCCTCAAAGC......................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0
..............................TTCCGTAGCTGGCATCGCTC................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0
..................................................GCCGTAAATTGTAATCATCAAAGC......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAG...................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0
..................................................GATGTAAATTGTAATCATCA............................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0
........................................................................................TCTTGGTGTTACTTCTTGCAGTGA................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................TGGTGTTACTTCTTACAGTG.................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................ATGGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................TGGTGTTACTTCTTGCAGTG.................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................TGGTTGTTACTTCTTACAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..................................................GCTGTAAATTGTAATCATCCAAGCG........................................................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................GTTGGTGTTACTTCTTGCAGTGA................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0
..................................................GCTTTAAATTGTAATCATCAAAGC......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACATTGA................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0
..........................................................................................TTGGTGTTGCTTCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGCGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTTCAGTGA................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0
..........................................................................................TTGGCGTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................CTTGGTGTTACTTCTTGCAGTGT................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGT................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................CGTGGTGTTACTTCTTACAGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTGGTGTTGCTTCTTGCGGTGA................................................... 22 3 3 0.67 2 0 0 2 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTT.................................................... 21 2 3 0.67 2 0 0 0 0 1 1 0
..........................................................................................TTGGTGTTACTTCTTGCGG...................................................... 19 2 3 0.67 2 0 2 0 0 0 0 0
..........................................................................................TTGGTGTTGCTTCTTACGGTGA................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTTCCGTGC................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0
...........................................................................................TGGTGTTACTTCTTGCGGTG.................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTTA................................................... 22 2 2 0.50 1 0 0 0 0 0 1 0
..........................................................................................TTGGTGTTACTTCTTGCGGTTA................................................... 22 3 2 0.50 1 0 0 0 0 1 0 0
..........................................................................................TTGGTGTTTCTTCTTGCGGTGA................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0
..........................................................................................TTGGTGTTACTTATTGCAGTGT................................................... 22 3 3 0.33 1 0 0 0 0 1 0 0
..........................................................................................CTGGTGCTACTTCTTGCAGTGA................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................GAAAAACGCCTTTAAGATTAAA...... 22 3 3 0.33 1 0 0 1 0 0 0 0
..................................................GCTGTAAATTGTAATGGCCAAA........................................................................................... 22 3 4 0.25 1 0 0 0 0 0 1 0
..........................................................................................TTGGTGTTCCTTCTTGCAGTGG................................................... 22 3 5 0.20 1 0 1 0 0 0 0 0
..........................................................................................TGCGTGTTACTTCTTGCAGTG.................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
.................................CATGCCTGGCATCCCTCGCT.............................................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0 0
..........................................................................................TTGCAGTTACTTCTTGCAGTG.................................................... 21 3 11 0.09 1 0 0 0 0 1 0 0
..........................AGAATTCCGTGCCGGGGAT...................................................................................................................... 19 3 13 0.08 1 0 0 1 0 0 0 0
.......................................................................................CGCTTGGTTTAAATTCTTAC........................................................ 20 3 16 0.06 1 0 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTTGCATTT.................................................... 21 3 19 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

GCGGCGCAACAAAGCGACGTACACTCTCTTAAGGCACCGACCGTAGCGAGCGACATTTAACATTAGTAGTTTCGCAAAAGAGTCTCGGCGAACCACAATGAAGAATGTCACTCACACGGTCAGGCATGTGTCTTTCTTTTTGGGGAAATTCTTTTTTGTGTTT

************************************.((((((((.((((((((((((...((((.((((((.(((((((...)))).)))))))))))))...))))))))))))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 X:7229754-7229916 + dya_52 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----AACCCCTTTA-------------------------------------------------------------------AGAAAAAACA-----CAAA--------
droEre2 scaffold_4690:13914698-13914875 - der_60 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACCCC-TT---------CCTTTG------------------------GTACATAAC----AAAAA----AATAA---ATA------------AATA--------
droSec2 scaffold_21:701202-701363 + dse_66 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACCCC-TTTTGAAAAAACCATTT------------------------------------------------------------------------A--------
droSim2 x:12305303-12305464 + dsi_358 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACCCC-TTTTGAAAAAACCATTT------------------------------------------------------------------------A--------
dm3 chrX:12956074-12956242 + dme-mir-971 Known_mirbase CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACCCC-TATTGATATAACCATTTAATTTTC-----------------------------------------------------------------A--------
droEug1 scf7180000409110:1404448-1404610 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACACAGAAAGAAA-----A------TATGAAG----------------------------AAGAAG-----------------------------------AACC-----CTAA--------
droBia1 scf7180000298389:643165-643321 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--CAGAGAAA-----ACCCC-TTTTC------CCCTGG------------------------------------------------------------------------A--------
droTak1 scf7180000413998:42792-42971 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAAAAAATAACCCTTTT-G----------------------------CCGAAAA-------------------------------AGAAAAAATCCCCTGAAAA--------
droEle1 scf7180000490546:934541-934694 - CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGCC---CGTACACA--GAAAGAAA-----T----------AAAAACTCATTG------------------------------------------------------------------------A--------
droRho1 scf7180000779914:464097-464290 - CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGTTCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-TTCA--GAACCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACTCC-CTTTGAAAGCTCCTTAAGGCAATAAA-AAAAGACATCACCAA-----------------------------------CGCA-----AAAA--------
droFic1 scf7180000454050:893092-893285 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--AAGAGAAA-----ACCCC-ATATGAAACCCCCTTTGAACAACCAGTAAAACTCCCAAAAAG-----------------------------------AACA-----AAAA--------
droKik1 scf7180000302544:775450-775606 - CGCCGCGTTC--------------AGAGCGAAA--------TTCCTTGGCTGGCAG--CGCACACTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGCGCCAGTA-CACGTACACACGGCAAGAAA-----GAACC-TT-----------------------------------------------------------------------AAAAAGTATATTTGAAA--------
droAna3 scaffold_13117:3891768-3891939 + dan_51 confident CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT---TTTTATCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT---GGAGCACA--TA-------------------------------TTA-------------------------------AA----AAAAA----AATAA---ATAAAAAATA-----AAAATGTCTTTG
droBip1 scf7180000396383:483133-483307 - CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT---TTTTATCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT---GGAGCACA---------------------------------CATTT-------------------------------AACTGAAAAAGACTAAAACCTAAAAAAAAAAAG-----CAAG--------
dp5 XL_group3a:1391638-1391761 - dps-mir-971 Known_mirbase CGCCGCGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT---TTTGTTGG--TAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG----------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_52:413294-413417 + dpe_90 confident CGCCGCGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT---TTTGTTGG--TAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG----------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:6691507-6691611 - dwi_36 confident CGCCGCGTTATAC-------------------A--------TTAAACGGCCCAATA--CGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTT---TGCCTCACAGCTTGGTGTTACTTCTTACAGTGAGTGTG----------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:4279775-4279879 - dvi-mir-971 Known_mirbase CAACACGTCACA-AGCTGA-----------------------------AATGACGTCACGCCCGCTGTAAAATGTAATCATCAGAGCGTC---CT--CTC----AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCC---C------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:350122-350197 + dmo_78 confident CGA----------------------------------------------------------CCGCTGTAAATTGTAATCATCAAAGCGTC---TG--CTA----AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTC----------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:994424-994545 - dgr_60 candidate-rescued AGATGCCACGA--------------------------------ACTTGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG---TAT-TTT----ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCACACGTCCAGC--GGAGGAGA-------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----AACCCCTTTA-------------------------------------------------------------------AGAAAAAACA-----CAAA--------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221227.002271111138630220000
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................................................24169.00692813901000000
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................................................23136.0036292410000000
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................................................20110.001001005400000
.........................................TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................................................20110.001090100000000
................................A--------TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................................................2116.00650100000000
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................................................1916.00600600000000
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................................................1914.00431000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................2114.00400400000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................2314.00411110000000
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................2114.00404000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2313.00300210000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................................................2212.00210010000000
...............................................................GCTGTAAATTGTAATCATCAAAGCG.........................................................................................................................................................................................2512.00210010000000
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................................................2111.00100000100000
..........................................TCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................................................1911.00110000000000
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................................................2011.00100100000000
droEre2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACCCC-TT---------CCTTTG------------------------GTACATAAC----AAAAA----AATAA---ATA------------AATA--------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221231.0023139451661790
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................................................20145.004500601380
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................................................24129.0029112011140
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................................................23126.002601210220
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................................................21122.002200000220
...............................................................GCTGTAAATTGTAATCATCAAA............................................................................................................................................................................................22122.002210000210
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................21115.00152405040
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................2115.0055000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2315.0050400010
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2212.0020011000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................2312.0020000020
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................2012.0020000020
................................................................CTGTAAATTGTAATCATCAAAG...........................................................................................................................................................................................2212.0022000000
...............................................................GCTGTAAATTGTAATCATCAAAGCG.........................................................................................................................................................................................2512.0020000020
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................................................2212.0020011000
...............................................................GCTGTAAATTGTAATCAT................................................................................................................................................................................................1812.0020000020
...............................................................GCTGTAAATTGTAATCATCAAAA...........................................................................................................................................................................................2311.0010000010
..............................................................................................................TTGGTGTTACTTCTTACAGTGTA............................................................................................................................................2311.0010001000
..............................................................CGCTGTAAATTGTAATCATCA..............................................................................................................................................................................................2111.0010000010
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................................................1911.0010000010
...............................................................GCTGTAAATTGTAATCATCG..............................................................................................................................................................................................2011.0010000010
..............................................................CGCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................................................2411.0010000010
.........................................TTCCGTGGCTGGCAT--CGCCC..................................................................................................................................................................................................................2011.0011000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAC............................................................................................................................................2311.0010100000
...............................AA--------TTCCGTGGCTGGCAT--CGCCC..................................................................................................................................................................................................................2211.0010000010
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................................................2211.0011000000
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................................................1811.0010001000
..........................................................................................................................................CAGTC---CGTACACA--GAAAGAAA-----A.......................................................................................................2211.0010000010
droSec2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACCCC-TTTTGAAAAAACCATTT------------------------------------------------------------------------A--------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221177.001776012645
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................................................20128.002811125
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................................................21112.001200012
...............................................................GCTGTAAATTGTAATCATCAAA............................................................................................................................................................................................2217.0070007
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................2116.0060051
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................................................1915.0050005
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2315.0050050
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................................................2415.0051013
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................................................2313.0031002
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2212.0020020
.........................................TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................................................2011.0010010
..............................................................CGCTGTAAATTGTAATCATCAA.............................................................................................................................................................................................2211.0010001
...............................................................GCTGTAAATTGTAATCATCAAAGCG.........................................................................................................................................................................................2511.0010010
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................................................2211.0010010
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................2111.0011000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................2011.0010001
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................................................2211.0010010
.................................................................................CAAAGCGTT---TT--CTCA--GGC.......................................................................................................................................................................1880.1311000
droSim2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACCCC-TTTTGAAAAAACCATTT------------------------------------------------------------------------A--------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221285.0028552062700001813013300000
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................................................24196.00966113300000010000000
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................................................23190.00907611300000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................................................22126.0026901600000000100000
.........................................TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................................................20116.0016160000000000000000
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................................................19116.0016160000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................2115.00500000000000500000
................................A--------TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................................................2114.00430100000000000000
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................................................1812.00200000000110000000
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................................................1912.00210100000000000000
...............................................................GCTGTAAATTGTAATCATCAAAGA..........................................................................................................................................................................................2411.00100000000010000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................2311.00100100000000000000
...............................................................GCTGTAAATTGTAATCATCAAA............................................................................................................................................................................................2211.00100000000010000000
...............................AA--------TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................................................2211.00110000000000000000
dm3
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACCCC-TATTGATATAACCATTTAATTTTC-----------------------------------------------------------------A--------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2214185.004185000018000018591010108000028000015117103000000000000000010100000111140000000000000000000012591111028107276724181817751021516358410644051520852239299504902744169148243590000000000000000000000000000000000009313201562011913261321168625930000004070000000000000000000000000001000016032402610010000221703140000280300011650030000071010000000001003001111363714011100100600330100001200004000284319100075120
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................................................201359.003590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000050000011031810000000000000000000000000000000000000152801600317020131031500000180000000000000000000000000000000000000000000000000003000023020000000000000000000000000000000000252244380000000000001000000000000000000100010001000
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................................................241280.0028000001000000000000000000000000018210100000000000000000000000000000000000000000000000000000000010060010001600000100101000130101220518300000000000000000000000000000000000012210130042601801823710000009000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100022220300000000000000000000000000001100000000000
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................................................231229.002290000000000000000000000000000118140000000000000000000000000000000000000000000000000000000000010000000001000000000000001000022704293000000000000000000010000000000000000111204006151813023860000014000000000000000000000000000000000000000000000000000200003101000001000000000000000000000000000016150201000000000000000000000000000000000000000
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................................................211174.0017400000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000250000000000000020000000021730000000000000000000000000000000000001110013016806013020000000150000000000000000000000000000000000000000000000000000000010010000030000000000000000000000000000184100010000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................211163.001630000000000000000001000050000000000000100000000000000000013100000000000000000000010000006000201830220130200020001020300200000102022000000000000000000000000000000000000130000230105054000009000000000000000000000000000000000000000000000003100000000000000100001000009000000000000000000012010300000000000000000002000000000700100004520
...............................................................GCTGTAAATTGTAATCATCAAA............................................................................................................................................................................................22178.00780000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020210000000000000000000000000000000000009907001515170140000002000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000013310000000000000000000000000000000000000000000
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................................................19173.007300000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000131100000000000000000000000000000000000022000000113803100000000000000000000000000000000000000000000000000000000030000010000000000000000000000000000000000009310110000000000000000000000000000000200000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................22146.0046000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000090010001000000000000000000100000001052000000000000000000000000000000000000010100020000000000001000000000000000000000000000000000000000000000001000100001000000000001000001000000000000010100000010100000000100000000001000000000400000001110
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................................................22134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000030000000000000000000003800000104183000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................23128.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010130010008000000001000000000000000000000000000000000000000000000000000000010000210101000000002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000010000000000000000000000000000000200000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000001000500000000000000000000000000000000000000000010100010201020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100300000000001000000000000000000000000000100
...............................................................GCTGTAAATTGTAATCAT................................................................................................................................................................................................18116.0016000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112000000000000000000000000000000000000020100000102100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAT............................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000200
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................................................1819.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000010100000001000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................2118.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000001011000000000000000000000000000000000000110000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................................................2218.008000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000010000000000000000000010000100000000000000000000000000000000000000000000000100000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAG............................................................................................................................................2315.005000000000000000000000000000000000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GCTGTAAATTGTAATCATCAAAGA..........................................................................................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010110020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACA.................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000000
...............................................................GCTGTAAATTGTAATCATCAAAGG..........................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010
...............................................................GCTGTAAATTGTAATCATCAAAGCG.........................................................................................................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000
droEug1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACACAGAAAGAAA-----A------TATGAAG----------------------------AAGAAG-----------------------------------AACC-----CTAA--------SizeHit CountTotal NormTotal
No Reads
droBia1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--CAGAGAAA-----ACCCC-TTTTC------CCCTGG------------------------------------------------------------------------A--------SizeHit CountTotal NormTotal
No Reads
droTak1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAAAAAATAACCCTTTT-G----------------------------CCGAAAA-------------------------------AGAAAAAATCCCCTGAAAA--------SizeHit CountTotal NormTotal
No Reads
droEle1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGCC---CGTACACA--GAAAGAAA-----T----------AAAAACTCATTG------------------------------------------------------------------------A--------SizeHit CountTotal NormTotal
No Reads
droRho1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGTTCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-TTCA--GAACCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAAA-----ACTCC-CTTTGAAAGCTCCTTAAGGCAATAAA-AAAAGACATCACCAA-----------------------------------CGCA-----AAAA--------SizeHit CountTotal NormTotal
No Reads
droFic1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--AAGAGAAA-----ACCCC-ATATGAAACCCCCTTTGAACAACCAGTAAAACTCCCAAAAAG-----------------------------------AACA-----AAAA--------SizeHit CountTotal NormTotal
No Reads
droKik1
CGCCGCGTTC--------------AGAGCGAAA--------TTCCTTGGCTGGCAG--CGCACACTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGCGCCAGTA-CACGTACACACGGCAAGAAA-----GAACC-TT-----------------------------------------------------------------------AAAAAGTATATTTGAAA--------SizeHit CountTotal NormTotal
No Reads
droAna3
CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT---TTTTATCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT---GGAGCACA--TA-------------------------------TTA-------------------------------AA----AAAAA----AATAA---ATAAAAAATA-----AAAATGTCTTTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221223.00223187812104101
...............................................................ACTGTAAATTGTAACCATCAAAGC..........................................................................................................................................................................................24129.002911501012
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................21126.00261311119
...............................................................ACTGTAAATTGTAACCATCAAAG...........................................................................................................................................................................................2316.006010005
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................2115.005400001
...............................................................ACTGTAAATTGTAACCATCA..............................................................................................................................................................................................2014.004100003
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................2313.003120000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2313.003030000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAAA...........................................................................................................................................2413.003020001
...............................................................ACTGTAAATTGTAACCATCAAA............................................................................................................................................................................................2213.003000003
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................................................2213.003001101
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................................................2212.002011000
.......................................................................................GTT---TTTTATCA--GAGCCGC...................................................................................................................................................................1812.002020000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................2012.002000101
.............................................................................................................CTTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2311.001000001
...............................................................ACTGTAAATTGTAACCATCAA.............................................................................................................................................................................................2111.001000001
...............................................................ACTGTAAATTGTAACCATCAAAGT..........................................................................................................................................................................................2411.001000001
..............................................................................................................TTGGTGTTACTTCTTACAGTA..............................................................................................................................................2111.001001000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2211.001000001
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................................................1911.001100000
...............................................................ACTGTAAATTGTAACCATCAAAGCT.........................................................................................................................................................................................2511.001000001
droBip1
CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT---TTTTATCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT---GGAGCACA---------------------------------CATTT-------------------------------AACTGAAAAAGACTAAAACCTAAAAAAAAAAAG-----CAAG--------SizeHit CountTotal NormTotal
No Reads
dp5
CGCCGCGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT---TTTGTTGG--TAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221538.00538020311864109355004
...............................................................GCTGTAAATTGTAATGGCCAAAGC..........................................................................................................................................................................................24170.00700818301040000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................23142.004204255620000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................21124.002401041261000
...............................................................GCTGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................................................25114.00140247100000
...............................................................GCTGTAAATTGTAATGGCCAAAG...........................................................................................................................................................................................23112.00120700050000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................22111.00110000380000
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................21110.001001000000000
...............................................................GCTGTAAATTGTAATGGCCA..............................................................................................................................................................................................2018.0080400040000
...............................................................GCTGTAAATTGTAATGGCCAAA............................................................................................................................................................................................2217.0070001050001
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................2316.0060301000002
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................................................1914.0040021010000
...............................................................GCTGTAAATTGTAATGGCCAA.............................................................................................................................................................................................2114.0040101020000
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................................................2213.0030110100000
...............................................................GCTGTAAATTGTAATGGCCAAAGCC.........................................................................................................................................................................................2512.0020002000000
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................................................1812.0020100100000
..........................................TCCCTGGACCCCAT--CGCTC..................................................................................................................................................................................................................1912.0020002000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAAA...........................................................................................................................................2411.0010100000000
.............................................................................................................CTTGGTGTTACTTCTTACAGC...............................................................................................................................................2111.0010001000000
.............................................................................................................CTTGGTGTTACTTCTTACAG................................................................................................................................................2011.0010010000000
................................................................CTGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................................................2411.0010000010000
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................................................2211.0010000010000
................................................................CTGTAAATTGTAATGGCCAAAGA..........................................................................................................................................................................................2311.0010100000000
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................................................2011.0010100000000
........................................TTTCCCTGGACCCCAT--CGCTC..................................................................................................................................................................................................................2111.0010001000000
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................................................2011.0010100000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................................................2211.0010010000000
.............................................................................................................CTTGGTGTTACTTCTTACAGT...............................................................................................................................................2111.0010000100000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................2011.0010000100000
.................................................................TGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................................................2311.0010001000000
.......................................................................................TTT---TTTGTTGG--TAGCAGC...................................................................................................................................................................1821.0020020000000
..............................................................................................................TTGGTGTTACTTCTTACAC................................................................................................................................................1911.0010010000000
droPer2
CGCCGCGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT---TTTGTTGG--TAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221192.0019224234653424
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................21119.0019024931
...............................................................GCTGTAAATTGTAATGGCCAAAG...........................................................................................................................................................................................2319.009000540
...............................................................GCTGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................................................2519.009001260
...............................................................GCTGTAAATTGTAATGGCCA..............................................................................................................................................................................................2018.008020240
...............................................................GCTGTAAATTGTAATGGCCAAA............................................................................................................................................................................................2217.007000340
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2316.006011310
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................................................2215.005500000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2215.005000230
...............................................................GCTGTAAATTGTAATGGCCAA.............................................................................................................................................................................................2114.004010030
.........................................TTCCCTGGACCCCAT--CGCTC..................................................................................................................................................................................................................2014.004000220
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................................................2213.003000201
.......................................................................................TTT---TTTGTTGG--TAGCAGC...................................................................................................................................................................1823.006300030
.................................................................TGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................................................2313.003000120
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................2113.003020100
.............................................................................................................CTTGGTGTTACTTCTTACAGT...............................................................................................................................................2113.003100110
...............................................................GCTGTAAATTGTAATGGCCAAAT...........................................................................................................................................................................................2312.002000020
...............................................................GCTGTAAATTGTAATGGCCAAAGC..........................................................................................................................................................................................2412.002020000
..........................................TCCCTGGACCCCAT--CGCTC..................................................................................................................................................................................................................1911.001000010
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................2311.001000010
...............................................................GCTGTAAATTGTAATGGCCAAT............................................................................................................................................................................................2211.001000001
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................2011.001000010
..............................................................................................................TTGGTGTTACTTCTTACA.................................................................................................................................................1811.001010000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2311.001001000
...............................................................GCTGTAAATTGTAATGGCC...............................................................................................................................................................................................1911.001000010
droWil2
CGCCGCGTTATAC-------------------A--------TTAAACGGCCCAATA--CGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTT---TGCCTCACAGCTTGGTGTTACTTCTTACAGTGAGTGTG----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2214923.00492343116785403777
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................211449.00449139028399
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................221118.001180107110
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................................................22182.0082780022
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................20174.0074331166
...............................................................GCTGTAAATTGTAGCAATCAAAGC..........................................................................................................................................................................................24172.00725200128
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................21122.0022015007
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................23120.0020010118
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................23110.001001027
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................................................1917.00731003
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................................................2215.00500104
..............................................................................................................TTGGTGTTACTTCTTACAGTGAT............................................................................................................................................2314.00400013
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................................................2013.00311001
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................................................2012.00201001
..............................................................................................................TTGGTGTTACTTCTTACAGTA..............................................................................................................................................2112.00200002
..........................................TAAACGGCCCAATA--CGCTC..................................................................................................................................................................................................................1912.00220000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAAA...........................................................................................................................................2412.00201100
.............................................................................................................CTTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2311.00100001
..............................................................................................................TTGGTGTTACTTCTTACAGTT..............................................................................................................................................2111.00100001
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................................................1811.00100001
..............................................................................................................TTGGTGTTACTTCTTACAGTGAGT...........................................................................................................................................2411.00100001
..............................................................................................................TTGGTGTTACTTCTTACAC................................................................................................................................................1911.00110000
...................................................................................................................GTTACTTCTTACAGTGAA............................................................................................................................................1811.00101000
...............................................................................................................TGGTGTTACTTCTTACAGTGT.............................................................................................................................................2111.00100001
..............................................................................................................TTGGTGTTACTTCTTACA.................................................................................................................................................1811.00100001
...............................................................................................................TGGTGTTACTTCTTACAGT...............................................................................................................................................1911.00100001
...............................................................................................................TGGTGTTACTTCTTACAGTGAAA...........................................................................................................................................2311.00101000
...............................................................GCTGTAAATTGTAGCAATCAAAG...........................................................................................................................................................................................2311.00101000
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................................................2211.00100001
..............................................................................................................TTGGTGTTACTTCTTACAGTGAG............................................................................................................................................2311.00100001
...............................................................GCTGTAAATTGTAGCAATC...............................................................................................................................................................................................1911.00110000
...................................................................................................................GTTACTTCTTACAGTGAT............................................................................................................................................18100.10100001
droVir3
CAACACGTCACA-AGCTGA-----------------------------AATGACGTCACGCCCGCTGTAAAATGTAATCATCAGAGCGTC---CT--CTC----AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCC---C------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221962.0096205416463200001000078372683302902110000100822221270000053000000000010000000487441300001104020100000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................211175.0017513153000000000052730211700000711140170000071000000000000000001034600000000000000000
...............................................................GCTGTAAAATGTAATCATCAGAGC..........................................................................................................................................................................................24144.00441509000000000062211102300000000000000002000000000000000000016100000001000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................22135.003500000000010000000100003000000000050000012000000000000000000033700000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................21118.001800160000000000000000000000000000000000001000000000000000000010000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................................................22113.001301200000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................23112.00120030000000000011010000000000100101000003000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAT............................................................................................................................................2319.0090000000000000000010001100000000200000003000000000000000000010000000000000000000
...............................................................GCTGTAAAATGTAATCATCAGAG...........................................................................................................................................................................................2317.0070100000000000040000200000000000000000000000000000000000000000000000000000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2317.0070020000000000010010000000000000100000000000000000000000000011000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................................................1914.0040003000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................................................2213.0030000000000000010010000000000100000000000000000000000000000000000000000000000000
...............................................................GCTGTAAAATGTAATCATCAGA............................................................................................................................................................................................2213.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................CCGCTGTAAAATGTAATCATCAGAGC..........................................................................................................................................................................................2613.0030100000000000000000000000000000000000000000000000000000000200000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................2013.0030000000000000001010000000000000000000000000000000000000000001000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTT..............................................................................................................................................2112.0020000000000000000000011000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................................................2212.0020000000000000000010000000000000000000000000000000000000000001000000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTGT.............................................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAAA...........................................................................................................................................2411.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................TGTTACTTCTTACAGTGAAA...........................................................................................................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................GTTACTTCTTACAGTGAA............................................................................................................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTC..............................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTGAA............................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTTACTTCTTACAGTGAA............................................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
................TGA-----------------------------AATGACGTCACGCCC..................................................................................................................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAC................................................................................................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
CGA----------------------------------------------------------CCGCTGTAAATTGTAATCATCAAAGCGTC---TG--CTA----AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTC----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................221543.0054319051435618914
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................................................24140.00402111350
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................21123.00232200010
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................23120.00206001121
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................................................21118.0018722340
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................................................2318.008112040
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2218.008004310
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................................................2017.007103300
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................................................2313.003200001
..............................................................................................................TTGGTGTTACTTCTTACAGTGAT............................................................................................................................................2313.003210000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................................................2013.003002010
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................................................1913.003000030
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................................................2012.002200000
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................................................2212.002010100
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................................................1912.002002000
.............................................................................................................CTTGGTGTTACTTCTTACAGT...............................................................................................................................................2112.002000020
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................................................2011.001100000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAC............................................................................................................................................2311.001000010
..............................................................CGCTGTAAATTGTAATCATC...............................................................................................................................................................................................2011.001000100
..............................................................CGCTGTAAATTGTAATCATCA..............................................................................................................................................................................................2111.001000100
...............................................................GCTGTAAATTGTAATCATCAAAGA..........................................................................................................................................................................................2411.001000010
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................................................1811.001010000
..............................................................................................................TTGGTGTTACTTCTTACAGTGATT...........................................................................................................................................2411.001000010
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................................................2211.001001000
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................................................2111.001000100
droGri2
AGATGCCACGA--------------------------------ACTTGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG---TAT-TTT----ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCACACGTCCAGC--GGAGGAGA-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................................................22111.0011110
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................................................2011.00110
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................................................2211.00101
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................................................2311.00110
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................................................2111.00110

Generated: 10/20/2015 at 06:58 PM